Wall clock time and date at job start Tue Mar 31 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32558 * 1 3 3 C 1.47822 * 119.99738 * 2 1 4 4 C 1.39597 * 120.10889 * 359.97438 * 3 2 1 5 5 C 1.38007 * 120.01529 * 180.02562 * 4 3 2 6 6 C 1.38224 * 120.22011 * 359.74591 * 5 4 3 7 7 C 1.39015 * 120.20877 * 0.51267 * 6 5 4 8 8 N 1.39692 * 120.00459 * 179.76610 * 7 6 5 9 9 C 1.39794 * 120.00415 * 354.98235 * 8 7 6 10 10 C 1.38782 * 120.10911 * 254.87292 * 9 8 7 11 11 C 1.38177 * 119.99052 * 180.29598 * 10 9 8 12 12 C 1.38351 * 120.20829 * 359.72080 * 11 10 9 13 13 C 1.38176 * 120.21252 * 359.97438 * 12 11 10 14 14 C 1.38717 * 120.00567 * 0.02562 * 13 12 11 15 15 O 1.35793 * 120.10101 * 180.02562 * 14 13 12 16 16 C 1.34804 * 116.99840 * 5.65245 * 15 14 13 17 17 H 1.08001 * 119.99798 * 354.92586 * 16 15 14 18 18 C 1.38623 * 119.99629 * 174.93378 * 16 15 14 19 19 N 1.31578 * 120.00544 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99712 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47139 * 60.00135 * 20 18 16 22 22 H 1.48505 * 109.46786 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47127 * 299.99773 * 20 18 16 24 24 C 1.38708 * 119.98551 * 359.48780 * 7 6 5 25 25 H 1.07999 * 120.00350 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00321 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00133 * 180.02562 * 2 1 3 28 28 H 1.07998 * 119.98926 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.89001 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.89469 * 180.27366 * 6 5 4 31 31 H 0.96999 * 120.00459 * 174.98214 * 8 7 6 32 32 H 1.07996 * 119.99908 * 0.02562 * 10 9 8 33 33 H 1.08004 * 119.89531 * 179.74027 * 11 10 9 34 34 H 1.08006 * 119.89268 * 180.02562 * 12 11 10 35 35 H 1.08005 * 119.99107 * 180.02562 * 13 12 11 36 36 H 0.96992 * 120.00213 * 180.02562 * 19 18 16 37 37 H 1.08000 * 120.10831 * 180.23304 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0646 1.2802 0.0000 4 6 1.3689 2.4905 -0.0005 5 6 2.0608 3.6845 -0.0011 6 6 3.4430 3.6877 0.0042 7 6 4.1452 2.4879 -0.0006 8 7 5.5421 2.4961 -0.0002 9 6 6.2342 3.7065 -0.1008 10 6 6.8520 4.0583 -1.2927 11 6 7.5405 5.2525 -1.3875 12 6 7.6118 6.1033 -0.2988 13 6 6.9946 5.7644 0.8901 14 6 6.3010 4.5677 0.9951 15 8 5.6932 4.2330 2.1624 16 6 5.7011 5.1574 3.1435 17 1 6.2465 6.0802 3.0115 18 6 5.0094 4.9234 4.3218 19 7 4.3447 3.7992 4.4824 20 14 5.0198 6.2047 5.6811 21 1 4.4399 7.4728 5.1705 22 1 4.2109 5.7171 6.8271 23 1 6.4164 6.4428 6.1262 24 6 3.4585 1.2827 -0.0001 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8656 -0.9353 -0.0004 28 1 0.2889 2.4923 -0.0014 29 1 1.5205 4.6197 -0.0011 30 1 3.9792 4.6252 0.0082 31 1 6.0321 1.6618 0.0699 32 1 6.7982 3.3967 -2.1445 33 1 8.0243 5.5228 -2.3145 34 1 8.1511 7.0357 -0.3787 35 1 7.0522 6.4314 1.7376 36 1 3.8605 3.6357 5.3068 37 1 4.0021 0.3495 0.0000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212602922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:06 Heat of formation + Delta-G solvation = 36.042890 kcal Electronic energy + Delta-G solvation = -21067.422137 eV Core-core repulsion = 17968.219600 eV Total energy + Delta-G solvation = -3099.202536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19941 -39.96004 -38.21749 -36.55192 -34.39045 -34.23050 -31.78195 -30.76683 -29.94086 -28.68930 -27.27696 -24.38399 -23.44321 -23.12459 -22.57341 -20.39923 -19.79824 -18.92817 -18.12084 -17.62187 -16.72183 -16.42009 -16.34082 -16.08625 -15.50491 -15.30690 -15.04905 -14.70668 -14.53602 -14.33117 -13.95586 -13.80575 -13.54953 -13.02124 -12.66742 -12.61966 -12.51763 -12.46169 -12.21600 -12.17452 -11.67680 -11.65443 -11.25390 -10.79087 -10.70300 -9.70812 -9.16851 -8.96971 -8.43864 -8.24580 -6.10182 0.16811 0.45491 0.72725 0.78654 1.32755 1.43039 1.47869 1.79790 2.16323 2.60026 2.84072 3.14791 3.18561 3.50463 3.92817 4.02326 4.18804 4.24505 4.28111 4.38201 4.52119 4.52522 4.67128 4.68077 4.77037 4.96084 5.05560 5.10119 5.13886 5.19275 5.41980 5.49912 5.58181 5.63823 5.67341 5.72547 5.75136 5.99598 6.01098 6.03470 6.18510 6.64487 6.93702 7.01128 7.82672 8.77481 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011959 B = 0.006864 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.773225 B = 4078.531688 C = 5888.921950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.133 4.133 3 C -0.029 4.029 4 C -0.181 4.181 5 C -0.087 4.087 6 C -0.190 4.190 7 C 0.217 3.783 8 N -0.682 5.682 9 C 0.051 3.949 10 C -0.075 4.075 11 C -0.185 4.185 12 C -0.070 4.070 13 C -0.248 4.248 14 C 0.111 3.889 15 O -0.204 6.204 16 C -0.415 4.415 17 H 0.097 0.903 18 C -0.016 4.016 19 N -0.908 5.908 20 Si 1.010 2.990 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.196 4.196 25 H 0.129 0.871 26 H 0.104 0.896 27 H 0.129 0.871 28 H 0.141 0.859 29 H 0.128 0.872 30 H 0.091 0.909 31 H 0.405 0.595 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.119 0.881 36 H 0.269 0.731 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 -2.097 -10.498 10.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.030 4.030 4 C -0.200 4.200 5 C -0.105 4.105 6 C -0.213 4.213 7 C 0.115 3.885 8 N -0.308 5.308 9 C -0.042 4.042 10 C -0.095 4.095 11 C -0.204 4.204 12 C -0.088 4.088 13 C -0.267 4.267 14 C 0.058 3.942 15 O -0.109 6.109 16 C -0.491 4.491 17 H 0.114 0.886 18 C -0.215 4.215 19 N -0.545 5.545 20 Si 0.830 3.170 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.219 4.219 25 H 0.147 0.853 26 H 0.122 0.878 27 H 0.147 0.853 28 H 0.159 0.841 29 H 0.146 0.854 30 H 0.109 0.891 31 H 0.242 0.758 32 H 0.161 0.839 33 H 0.171 0.829 34 H 0.164 0.836 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.828 -2.255 -10.276 10.678 hybrid contribution 0.389 0.417 1.174 1.305 sum -1.440 -1.838 -9.102 9.396 Atomic orbital electron populations 1.24603 0.95098 1.03399 0.97141 1.21894 0.95899 0.95018 1.02265 1.19102 0.92339 0.94261 0.97279 1.21199 1.00273 0.91320 1.07239 1.20972 0.93064 0.98938 0.97565 1.20652 0.95098 0.96257 1.09264 1.17909 0.83639 0.94038 0.92919 1.41473 1.01962 1.06321 1.81014 1.16992 1.04903 0.90042 0.92310 1.21263 0.96302 0.97313 0.94621 1.21054 1.04491 0.94864 0.99967 1.21225 0.96424 0.99668 0.91469 1.21276 1.06089 0.98587 1.00793 1.20352 0.92484 0.94457 0.86949 1.84027 1.67254 1.40840 1.18810 1.21708 1.33396 0.99675 0.94334 0.88574 1.26422 0.94940 0.99793 1.00309 1.70214 1.31297 1.25691 1.27316 0.84775 0.79259 0.76927 0.76069 1.18442 1.19871 1.18237 1.20813 0.94175 0.95919 1.10943 0.85328 0.87831 0.85294 0.84123 0.85395 0.89122 0.75793 0.83936 0.82864 0.83607 0.86366 0.92225 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.53 14.15 66.67 0.94 -2.58 16 2 C -0.13 -3.49 9.91 23.66 0.23 -3.26 16 3 C -0.03 -1.00 5.87 -20.14 -0.12 -1.11 16 4 C -0.18 -6.25 9.40 22.54 0.21 -6.04 16 5 C -0.09 -3.39 10.02 22.21 0.22 -3.17 16 6 C -0.19 -8.51 8.93 22.45 0.20 -8.31 16 7 C 0.22 9.15 6.50 38.19 0.25 9.40 16 8 N -0.68 -27.55 5.18 -180.21 -0.93 -28.48 16 9 C 0.05 2.15 4.89 38.31 0.19 2.34 16 10 C -0.08 -2.51 9.97 22.39 0.22 -2.29 16 11 C -0.18 -5.48 10.04 22.28 0.22 -5.25 16 12 C -0.07 -2.30 10.04 22.28 0.22 -2.08 16 13 C -0.25 -10.58 9.16 22.37 0.20 -10.38 16 14 C 0.11 5.40 5.48 22.70 0.12 5.52 16 15 O -0.20 -11.97 9.18 -22.95 -0.21 -12.18 16 16 C -0.41 -24.00 9.49 67.91 0.64 -23.36 16 17 H 0.10 5.14 5.21 -2.91 -0.02 5.13 16 18 C -0.02 -0.91 5.49 84.82 0.47 -0.44 16 19 N -0.91 -55.97 13.67 21.61 0.30 -55.67 16 20 Si 1.01 43.38 29.55 68.60 2.03 45.40 16 21 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 24 C -0.20 -7.27 9.63 22.66 0.22 -7.05 16 25 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 26 H 0.10 2.15 6.03 -2.91 -0.02 2.13 16 27 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 28 H 0.14 3.94 6.16 -2.91 -0.02 3.92 16 29 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 30 H 0.09 4.45 6.28 -2.91 -0.02 4.43 16 31 H 0.41 14.42 8.84 -92.71 -0.82 13.60 16 32 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 33 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 34 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 35 H 0.12 5.18 5.64 -2.91 -0.02 5.16 16 36 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 37 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -71.87 320.72 5.92 -65.95 By element: Atomic # 1 Polarization: 42.76 SS G_CDS: 0.28 Total: 43.04 kcal Atomic # 6 Polarization: -62.51 SS G_CDS: 4.46 Total: -58.05 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -0.64 Total: -84.16 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.21 Total: -12.18 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -71.87 5.92 -65.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212602922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.992 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds