Wall clock time and date at job start Tue Mar 31 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32620 * 1 3 3 C 1.47747 * 119.99575 * 2 1 4 4 C 1.39620 * 120.05982 * 180.02562 * 3 2 1 5 5 C 1.37785 * 119.92976 * 180.02562 * 4 3 2 6 6 C 1.39080 * 120.06725 * 0.02562 * 5 4 3 7 7 N 1.39528 * 119.93502 * 179.97438 * 6 5 4 8 8 C 1.39779 * 119.99859 * 151.37463 * 7 6 5 9 9 C 1.38973 * 120.00642 * 145.95861 * 8 7 6 10 10 C 1.37999 * 119.99031 * 180.27277 * 9 8 7 11 11 C 1.38910 * 120.00662 * 359.45223 * 10 9 8 12 12 O 1.35782 * 119.99477 * 180.27537 * 11 10 9 13 13 C 1.34810 * 116.99745 * 354.26808 * 12 11 10 14 14 H 1.08001 * 120.00021 * 355.04782 * 13 12 11 15 15 C 1.38615 * 120.00102 * 175.04573 * 13 12 11 16 16 N 1.31588 * 119.99851 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00003 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47292 * 60.00133 * 17 15 13 19 19 H 1.48501 * 109.46726 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47235 * 299.99977 * 17 15 13 21 21 C 1.38922 * 120.01431 * 0.25085 * 11 10 9 22 22 C 1.37990 * 120.00886 * 0.02562 * 21 11 10 23 23 C 1.39073 * 120.12826 * 0.23856 * 6 5 4 24 24 C 1.37790 * 120.06633 * 359.48336 * 23 6 5 25 25 H 1.08002 * 119.99658 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00860 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00383 * 179.97438 * 2 1 3 28 28 H 1.08001 * 120.03373 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.96457 * 179.97438 * 5 4 3 30 30 H 0.97002 * 119.99978 * 331.37102 * 7 6 5 31 31 H 1.08000 * 120.00852 * 0.02562 * 9 8 7 32 32 H 1.07995 * 119.99714 * 179.72553 * 10 9 8 33 33 H 0.97002 * 119.99962 * 180.02562 * 16 15 13 34 34 H 1.07998 * 119.99673 * 180.02562 * 21 11 10 35 35 H 1.07995 * 120.00566 * 179.97438 * 22 21 11 36 36 H 1.08004 * 119.96891 * 179.74785 * 23 6 5 37 37 H 1.07999 * 120.03381 * 180.23771 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3262 0.0000 0.0000 3 6 2.0648 1.2796 0.0000 4 6 3.4610 1.2811 -0.0005 5 6 4.1472 2.4760 0.0000 6 6 3.4504 3.6797 0.0016 7 7 4.1480 4.8880 0.0027 8 6 3.5769 6.0252 -0.5758 9 6 3.8246 7.2802 -0.0326 10 6 3.2561 8.4020 -0.6006 11 6 2.4456 8.2782 -1.7219 12 8 1.8909 9.3828 -2.2839 13 6 2.0682 10.5527 -1.6379 14 1 2.5610 10.5697 -0.6771 15 6 1.6180 11.7338 -2.2070 16 7 1.0171 11.7129 -3.3775 17 14 1.8643 13.3549 -1.3123 18 1 3.3156 13.5886 -1.1017 19 1 1.2974 14.4603 -2.1258 20 1 1.1752 13.3046 0.0022 21 6 2.2028 7.0244 -2.2687 22 6 2.7663 5.9016 -1.6979 23 6 2.0596 3.6811 0.0077 24 6 1.3680 2.4894 0.0014 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9352 -0.0004 27 1 1.8662 -0.9352 0.0004 28 1 4.0026 0.3468 -0.0005 29 1 5.2272 2.4779 0.0000 30 1 5.0292 4.9390 0.4049 31 1 4.4587 7.3771 0.8363 32 1 3.4449 9.3769 -0.1759 33 1 0.7024 12.5394 -3.7759 34 1 1.5729 6.9285 -3.1408 35 1 2.5772 4.9269 -2.1228 36 1 1.5211 4.6174 0.0131 37 1 0.2880 2.4912 0.0022 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212608766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:09 Heat of formation + Delta-G solvation = 48.829947 kcal Electronic energy + Delta-G solvation = -19996.056553 eV Core-core repulsion = 16897.408505 eV Total energy + Delta-G solvation = -3098.648048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.88384 -38.82494 -37.12702 -35.06228 -33.02438 -32.15435 -30.98819 -30.26957 -28.83846 -26.95434 -25.23924 -23.37711 -22.47020 -21.93113 -20.76448 -19.76640 -18.11374 -17.45919 -17.14908 -16.39101 -15.83546 -14.87692 -14.57601 -14.45291 -14.32105 -13.84801 -13.64540 -13.40442 -13.28748 -12.96133 -12.75955 -12.62852 -12.24753 -11.91728 -11.59353 -11.44757 -11.27230 -11.10463 -10.86927 -10.74816 -10.57615 -10.47182 -9.51965 -9.37673 -8.92048 -8.78195 -8.30233 -7.76881 -6.58928 -6.46178 -4.03794 1.01549 1.48942 2.09411 2.22585 2.64953 3.12148 3.12767 3.15856 3.61739 3.95517 4.00260 4.51938 4.75072 4.84653 5.01301 5.08234 5.14303 5.25043 5.39647 5.51717 5.52985 5.64460 5.66660 5.80264 6.03398 6.11654 6.16066 6.23815 6.32259 6.38838 6.51571 6.57831 6.75031 6.79406 6.84045 6.97364 7.03694 7.19272 7.32307 7.50831 7.83701 7.97691 7.99538 8.99170 9.69332 10.71772 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033786 B = 0.003085 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.548970 B = 9073.734390 C = 9538.084431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C -0.120 4.120 4 C -0.070 4.070 5 C -0.186 4.186 6 C 0.209 3.791 7 N -0.682 5.682 8 C 0.065 3.935 9 C -0.103 4.103 10 C -0.210 4.210 11 C 0.137 3.863 12 O -0.178 6.178 13 C -0.391 4.391 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.863 5.863 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.167 4.167 22 C -0.101 4.101 23 C -0.169 4.169 24 C -0.073 4.073 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.401 0.599 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.271 0.729 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.837 -17.257 7.347 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.119 4.119 3 C -0.122 4.122 4 C -0.088 4.088 5 C -0.208 4.208 6 C 0.108 3.892 7 N -0.305 5.305 8 C -0.029 4.029 9 C -0.123 4.123 10 C -0.230 4.230 11 C 0.084 3.916 12 O -0.081 6.081 13 C -0.468 4.468 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.498 5.498 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.187 4.187 22 C -0.122 4.122 23 C -0.191 4.191 24 C -0.091 4.091 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.130 0.870 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.237 0.763 31 H 0.128 0.872 32 H 0.148 0.852 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.147 0.853 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.503 -16.936 6.904 18.622 hybrid contribution 0.589 0.864 0.641 1.227 sum 4.092 -16.072 7.545 18.220 Atomic orbital electron populations 1.24264 0.95758 1.01942 1.01817 1.21719 0.95073 0.95637 0.99520 1.18871 0.93154 0.92912 1.07239 1.20935 0.93123 0.97181 0.97590 1.20674 0.99505 0.91210 1.09395 1.17896 0.91361 0.85669 0.94289 1.41863 1.19675 1.05873 1.63086 1.17234 1.03894 0.85701 0.96086 1.20502 1.01477 0.91259 0.99111 1.21011 1.03212 0.98807 0.99936 1.19361 0.91774 0.88437 0.92068 1.83997 1.64342 1.13272 1.46498 1.21243 1.40545 0.81920 1.03057 0.89212 1.25274 0.96294 0.98810 0.96140 1.70040 1.35689 1.28520 1.15512 0.85795 0.78942 0.79879 0.78900 1.19531 1.20270 1.19504 1.20068 1.05877 0.89690 1.03087 1.20494 0.99573 0.97745 0.94374 1.20960 0.92732 0.98855 1.06556 1.21088 0.99533 0.91247 0.97252 0.88269 0.88157 0.87002 0.86204 0.86190 0.76343 0.87241 0.85179 0.91957 0.86137 0.86698 0.85287 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.80 14.15 28.83 0.41 -1.40 16 2 C -0.10 -0.99 9.91 -37.60 -0.37 -1.37 16 3 C -0.12 -1.40 5.87 -104.98 -0.62 -2.02 16 4 C -0.07 -0.77 9.77 -39.23 -0.38 -1.15 16 5 C -0.19 -2.18 9.93 -39.43 -0.39 -2.57 16 6 C 0.21 2.85 5.93 -83.73 -0.50 2.35 16 7 N -0.68 -9.47 5.44 -8.34 -0.05 -9.52 16 8 C 0.06 1.10 5.79 -83.69 -0.48 0.61 16 9 C -0.10 -1.82 9.96 -39.40 -0.39 -2.21 16 10 C -0.21 -4.41 9.13 -39.42 -0.36 -4.77 16 11 C 0.14 3.24 6.65 -39.08 -0.26 2.98 16 12 O -0.18 -4.99 9.75 0.01 0.00 -4.99 16 13 C -0.39 -10.78 9.44 30.87 0.29 -10.49 16 14 H 0.09 2.27 5.28 -52.49 -0.28 1.99 16 15 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 16 N -0.86 -25.12 13.67 55.48 0.76 -24.37 16 17 Si 0.94 20.29 29.55 -169.99 -5.02 15.26 16 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 C -0.17 -3.48 9.98 -39.42 -0.39 -3.87 16 22 C -0.10 -1.82 7.98 -39.40 -0.31 -2.14 16 23 C -0.17 -2.38 8.07 -39.44 -0.32 -2.70 16 24 C -0.07 -0.91 9.39 -39.23 -0.37 -1.28 16 25 H 0.10 0.72 8.06 -52.49 -0.42 0.29 16 26 H 0.10 0.90 6.03 -52.49 -0.32 0.58 16 27 H 0.11 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.40 4.63 8.91 -40.82 -0.36 4.27 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.13 2.73 5.70 -52.49 -0.30 2.43 16 33 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 35 H 0.12 1.91 6.91 -52.49 -0.36 1.55 16 36 H 0.13 1.98 6.68 -52.48 -0.35 1.63 16 37 H 0.12 1.35 6.16 -52.49 -0.32 1.03 16 LS Contribution 319.49 15.07 4.81 4.81 Total: -1.00 -30.06 319.49 -8.01 -38.07 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -3.96 Total: 9.77 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -4.55 Total: -29.04 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.71 Total: -33.89 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: 0.00 Total: -4.99 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.06 -8.01 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212608766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.902 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds