Wall clock time and date at job start Tue Mar 31 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32620 * 1 3 3 C 1.47747 * 119.99575 * 2 1 4 4 C 1.39620 * 120.05982 * 180.02562 * 3 2 1 5 5 C 1.37785 * 119.92976 * 180.02562 * 4 3 2 6 6 C 1.39080 * 120.06725 * 0.02562 * 5 4 3 7 7 N 1.39528 * 119.93502 * 179.97438 * 6 5 4 8 8 C 1.39779 * 119.99859 * 151.37463 * 7 6 5 9 9 C 1.38973 * 120.00642 * 145.95861 * 8 7 6 10 10 C 1.37999 * 119.99031 * 180.27277 * 9 8 7 11 11 C 1.38910 * 120.00662 * 359.45223 * 10 9 8 12 12 O 1.35782 * 119.99477 * 180.27537 * 11 10 9 13 13 C 1.34810 * 116.99745 * 354.26808 * 12 11 10 14 14 H 1.08001 * 120.00021 * 355.04782 * 13 12 11 15 15 C 1.38615 * 120.00102 * 175.04573 * 13 12 11 16 16 N 1.31588 * 119.99851 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00003 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47292 * 60.00133 * 17 15 13 19 19 H 1.48501 * 109.46726 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47235 * 299.99977 * 17 15 13 21 21 C 1.38922 * 120.01431 * 0.25085 * 11 10 9 22 22 C 1.37990 * 120.00886 * 0.02562 * 21 11 10 23 23 C 1.39073 * 120.12826 * 0.23856 * 6 5 4 24 24 C 1.37790 * 120.06633 * 359.48336 * 23 6 5 25 25 H 1.08002 * 119.99658 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00860 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00383 * 179.97438 * 2 1 3 28 28 H 1.08001 * 120.03373 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.96457 * 179.97438 * 5 4 3 30 30 H 0.97002 * 119.99978 * 331.37102 * 7 6 5 31 31 H 1.08000 * 120.00852 * 0.02562 * 9 8 7 32 32 H 1.07995 * 119.99714 * 179.72553 * 10 9 8 33 33 H 0.97002 * 119.99962 * 180.02562 * 16 15 13 34 34 H 1.07998 * 119.99673 * 180.02562 * 21 11 10 35 35 H 1.07995 * 120.00566 * 179.97438 * 22 21 11 36 36 H 1.08004 * 119.96891 * 179.74785 * 23 6 5 37 37 H 1.07999 * 120.03381 * 180.23771 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3262 0.0000 0.0000 3 6 2.0648 1.2796 0.0000 4 6 3.4610 1.2811 -0.0005 5 6 4.1472 2.4760 0.0000 6 6 3.4504 3.6797 0.0016 7 7 4.1480 4.8880 0.0027 8 6 3.5769 6.0252 -0.5758 9 6 3.8246 7.2802 -0.0326 10 6 3.2561 8.4020 -0.6006 11 6 2.4456 8.2782 -1.7219 12 8 1.8909 9.3828 -2.2839 13 6 2.0682 10.5527 -1.6379 14 1 2.5610 10.5697 -0.6771 15 6 1.6180 11.7338 -2.2070 16 7 1.0171 11.7129 -3.3775 17 14 1.8643 13.3549 -1.3123 18 1 3.3156 13.5886 -1.1017 19 1 1.2974 14.4603 -2.1258 20 1 1.1752 13.3046 0.0022 21 6 2.2028 7.0244 -2.2687 22 6 2.7663 5.9016 -1.6979 23 6 2.0596 3.6811 0.0077 24 6 1.3680 2.4894 0.0014 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9352 -0.0004 27 1 1.8662 -0.9352 0.0004 28 1 4.0026 0.3468 -0.0005 29 1 5.2272 2.4779 0.0000 30 1 5.0292 4.9390 0.4049 31 1 4.4587 7.3771 0.8363 32 1 3.4449 9.3769 -0.1759 33 1 0.7024 12.5394 -3.7759 34 1 1.5729 6.9285 -3.1408 35 1 2.5772 4.9269 -2.1228 36 1 1.5211 4.6174 0.0131 37 1 0.2880 2.4912 0.0022 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212608766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:08 Heat of formation + Delta-G solvation = 32.491694 kcal Electronic energy + Delta-G solvation = -19996.765032 eV Core-core repulsion = 16897.408505 eV Total energy + Delta-G solvation = -3099.356528 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.17505 -40.25215 -38.60393 -36.31338 -34.34086 -33.78445 -32.11297 -31.67386 -30.08887 -28.31206 -27.08248 -24.45819 -23.64460 -23.38912 -22.16566 -20.60243 -19.88207 -18.98892 -18.37601 -17.89655 -16.82420 -16.29932 -16.10873 -15.77103 -15.53245 -15.40796 -15.20149 -14.56895 -14.36361 -14.35136 -14.07985 -13.83147 -13.57115 -13.34815 -13.19736 -12.82402 -12.66179 -12.44500 -12.15464 -12.09749 -11.89374 -11.58349 -11.22801 -10.85840 -10.36745 -9.91370 -9.82857 -9.05637 -8.44584 -7.93141 -6.10468 0.06267 0.47750 0.55823 0.75751 1.36332 1.46618 1.52415 1.75657 2.19323 2.45161 2.80848 3.06714 3.18721 3.53212 3.91189 4.01821 4.05130 4.09195 4.11165 4.40923 4.48120 4.49435 4.51395 4.62810 4.73903 4.93356 5.01005 5.08350 5.13931 5.19329 5.31083 5.40989 5.45351 5.51130 5.54468 5.67033 5.77181 5.86398 6.00628 6.03702 6.08957 6.55110 6.86677 7.00245 7.81990 8.78742 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033786 B = 0.003085 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.548970 B = 9073.734390 C = 9538.084431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 C -0.118 4.118 4 C -0.072 4.072 5 C -0.176 4.176 6 C 0.186 3.814 7 N -0.677 5.677 8 C 0.101 3.899 9 C -0.103 4.103 10 C -0.210 4.210 11 C 0.095 3.905 12 O -0.233 6.233 13 C -0.411 4.411 14 H 0.102 0.898 15 C -0.024 4.024 16 N -0.923 5.923 17 Si 1.017 2.983 18 H -0.256 1.256 19 H -0.273 1.273 20 H -0.258 1.258 21 C -0.173 4.173 22 C -0.100 4.100 23 C -0.185 4.185 24 C -0.087 4.087 25 H 0.119 0.881 26 H 0.095 0.905 27 H 0.135 0.865 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.417 0.583 31 H 0.146 0.854 32 H 0.126 0.874 33 H 0.272 0.728 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.581 -20.150 9.484 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.135 4.135 3 C -0.119 4.119 4 C -0.090 4.090 5 C -0.197 4.197 6 C 0.086 3.914 7 N -0.302 5.302 8 C 0.005 3.995 9 C -0.123 4.123 10 C -0.230 4.230 11 C 0.044 3.956 12 O -0.140 6.140 13 C -0.487 4.487 14 H 0.120 0.880 15 C -0.221 4.221 16 N -0.561 5.561 17 Si 0.837 3.163 18 H -0.181 1.181 19 H -0.198 1.198 20 H -0.182 1.182 21 C -0.193 4.193 22 C -0.120 4.120 23 C -0.207 4.207 24 C -0.105 4.105 25 H 0.137 0.863 26 H 0.113 0.887 27 H 0.152 0.848 28 H 0.169 0.831 29 H 0.162 0.838 30 H 0.255 0.745 31 H 0.164 0.836 32 H 0.144 0.856 33 H 0.081 0.919 34 H 0.134 0.866 35 H 0.149 0.851 36 H 0.126 0.874 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.280 -19.929 9.086 22.530 hybrid contribution 0.080 1.206 0.095 1.213 sum 5.360 -18.723 9.181 21.531 Atomic orbital electron populations 1.24511 0.95832 1.02761 0.99941 1.21899 0.95415 0.95603 1.00605 1.19224 0.93927 0.93316 1.05473 1.21329 0.92967 0.98256 0.96460 1.20960 1.00762 0.90484 1.07525 1.18022 0.91202 0.86058 0.96113 1.41739 1.20322 1.04996 1.63139 1.17331 1.01040 0.86728 0.94421 1.20779 1.01408 0.90323 0.99827 1.21109 1.02849 0.99915 0.99144 1.19819 0.93691 0.88251 0.93812 1.83955 1.67282 1.14374 1.48386 1.21757 1.40720 0.82445 1.03803 0.88049 1.26566 0.95801 1.02747 0.97026 1.70196 1.38442 1.29570 1.17912 0.84665 0.79548 0.74386 0.77738 1.18066 1.19809 1.18220 1.20219 1.06057 0.89805 1.03192 1.20613 0.99460 0.97352 0.94609 1.20916 0.93290 0.98609 1.07863 1.21249 1.00173 0.91372 0.97754 0.86250 0.88692 0.84770 0.83142 0.83805 0.74549 0.83609 0.85610 0.91924 0.86637 0.85098 0.87400 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.93 14.15 66.66 0.94 -1.98 16 2 C -0.12 -1.90 9.91 23.62 0.23 -1.67 16 3 C -0.12 -2.41 5.87 -20.10 -0.12 -2.53 16 4 C -0.07 -1.29 9.77 22.50 0.22 -1.07 16 5 C -0.18 -3.45 9.93 22.36 0.22 -3.22 16 6 C 0.19 4.56 5.93 38.32 0.23 4.79 16 7 N -0.68 -16.80 5.44 -180.30 -0.98 -17.78 16 8 C 0.10 3.23 5.79 38.23 0.22 3.45 16 9 C -0.10 -3.46 9.96 22.39 0.22 -3.24 16 10 C -0.21 -8.97 9.13 22.37 0.20 -8.77 16 11 C 0.09 4.69 6.65 22.59 0.15 4.84 16 12 O -0.23 -14.02 9.75 -22.89 -0.22 -14.24 16 13 C -0.41 -23.83 9.44 67.91 0.64 -23.19 16 14 H 0.10 5.34 5.28 -2.91 -0.02 5.32 16 15 C -0.02 -1.38 5.49 84.82 0.47 -0.91 16 16 N -0.92 -56.90 13.67 21.61 0.30 -56.61 16 17 Si 1.02 42.73 29.55 68.60 2.03 44.75 16 18 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 21 C -0.17 -7.48 9.98 22.37 0.22 -7.25 16 22 C -0.10 -3.54 7.98 22.39 0.18 -3.36 16 23 C -0.19 -4.98 8.07 22.36 0.18 -4.80 16 24 C -0.09 -2.05 9.39 22.50 0.21 -1.84 16 25 H 0.12 1.32 8.06 -2.91 -0.02 1.29 16 26 H 0.09 1.52 6.03 -2.91 -0.02 1.50 16 27 H 0.13 1.56 8.06 -2.91 -0.02 1.54 16 28 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 29 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.42 8.02 8.91 -92.71 -0.83 7.19 16 31 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 32 H 0.13 5.39 5.70 -2.91 -0.02 5.38 16 33 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 34 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 35 H 0.13 4.23 6.91 -2.91 -0.02 4.21 16 36 H 0.11 3.31 6.68 -2.91 -0.02 3.29 16 37 H 0.13 2.74 6.16 -2.91 -0.02 2.73 16 Total: -1.00 -69.95 319.49 5.82 -64.13 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.28 Total: 30.52 kcal Atomic # 6 Polarization: -55.19 SS G_CDS: 4.43 Total: -50.77 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -0.68 Total: -74.39 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.22 Total: -14.24 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -69.95 5.82 -64.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212608766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.622 kcal (2) G-P(sol) polarization free energy of solvation -69.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds