Wall clock time and date at job start Tue Mar 31 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32651 * 1 3 3 C 1.47683 * 120.00651 * 2 1 4 4 C 1.39491 * 120.18106 * 359.97438 * 3 2 1 5 5 C 1.37952 * 119.93373 * 179.72651 * 4 3 2 6 6 C 1.38455 * 120.30732 * 0.02562 * 5 4 3 7 7 C 1.38124 * 120.37380 * 0.02562 * 6 5 4 8 8 C 1.38787 * 120.05973 * 359.96210 * 7 6 5 9 9 N 1.39416 * 120.15034 * 180.02562 * 8 7 6 10 10 C 1.39778 * 119.99562 * 251.36519 * 9 8 7 11 11 C 1.38971 * 120.00912 * 7.43539 * 10 9 8 12 12 C 1.37997 * 119.99128 * 179.79277 * 11 10 9 13 13 C 1.38918 * 120.00540 * 0.45948 * 12 11 10 14 14 O 1.35783 * 119.98677 * 179.77237 * 13 12 11 15 15 C 1.34816 * 116.99452 * 185.34697 * 14 13 12 16 16 H 1.08004 * 120.00270 * 354.86639 * 15 14 13 17 17 C 1.38612 * 120.00200 * 174.86118 * 15 14 13 18 18 N 1.31581 * 120.00196 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99684 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47134 * 89.99704 * 19 17 15 21 21 H 1.48499 * 109.47199 * 209.99797 * 19 17 15 22 22 H 1.48501 * 109.47004 * 330.00134 * 19 17 15 23 23 C 1.38911 * 120.01586 * 359.79253 * 13 12 11 24 24 C 1.37995 * 120.00924 * 359.97438 * 23 13 12 25 25 H 1.07994 * 120.00657 * 180.02562 * 1 2 3 26 26 H 1.08006 * 119.99495 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.99495 * 179.97438 * 2 1 3 28 28 H 1.08008 * 120.03047 * 359.70282 * 4 3 2 29 29 H 1.08000 * 119.85060 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.81633 * 180.02562 * 6 5 4 31 31 H 1.07998 * 119.96977 * 180.02562 * 7 6 5 32 32 H 0.96998 * 120.00408 * 71.36973 * 9 8 7 33 33 H 1.08001 * 120.00604 * 0.02562 * 11 10 9 34 34 H 1.07999 * 119.99529 * 180.25519 * 12 11 10 35 35 H 0.97007 * 119.99667 * 180.02562 * 18 17 15 36 36 H 1.07994 * 119.99534 * 179.97438 * 23 13 12 37 37 H 1.07997 * 120.00577 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3265 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 1.3716 2.4892 -0.0005 5 6 2.0666 3.6808 0.0052 6 6 3.4511 3.6821 0.0109 7 6 4.1507 2.4911 0.0104 8 6 3.4670 1.2833 0.0050 9 7 4.1712 0.0801 0.0051 10 6 4.1948 -0.7158 -1.1438 11 6 3.6498 -0.2400 -2.3303 12 6 3.6772 -1.0243 -3.4654 13 6 4.2409 -2.2932 -3.4195 14 8 4.2635 -3.0665 -4.5354 15 6 4.7230 -4.3264 -4.3977 16 1 5.1291 -4.6527 -3.4516 17 6 4.6743 -5.2031 -5.4703 18 7 5.1223 -6.4329 -5.3357 19 14 3.9725 -4.6385 -7.1068 20 1 5.0603 -4.0687 -7.9417 21 1 3.3634 -5.7960 -7.8099 22 1 2.9359 -3.6019 -6.8697 23 6 4.7810 -2.7712 -2.2323 24 6 4.7583 -1.9855 -1.0981 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5399 0.9354 -0.0004 27 1 1.8665 -0.9354 0.0004 28 1 0.2915 2.4933 -0.0058 29 1 1.5283 4.6171 0.0043 30 1 3.9873 4.6197 0.0158 31 1 5.2306 2.4997 0.0154 32 1 4.6446 -0.2048 0.8023 33 1 3.2083 0.7451 -2.3651 34 1 3.2574 -0.6530 -4.3885 35 1 5.0885 -7.0463 -6.0864 36 1 5.2187 -3.7578 -2.1970 37 1 5.1778 -2.3573 -0.1751 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212610155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:12 Heat of formation + Delta-G solvation = 56.849565 kcal Electronic energy + Delta-G solvation = -20544.135567 eV Core-core repulsion = 17445.835275 eV Total energy + Delta-G solvation = -3098.300291 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.01884 -38.87844 -37.01319 -34.46016 -34.16849 -32.25389 -30.46492 -29.92914 -29.15306 -27.21952 -24.98659 -23.58941 -22.53395 -21.86244 -20.59546 -19.69886 -17.98245 -17.48488 -17.03484 -16.61331 -15.88956 -15.46021 -14.63726 -14.27789 -14.07968 -13.90721 -13.73668 -13.62547 -13.10242 -12.86430 -12.69907 -12.24594 -12.22094 -12.11840 -12.06218 -11.54187 -11.24630 -11.00314 -10.84790 -10.63584 -10.39703 -10.11970 -9.55538 -9.30919 -8.87564 -8.59877 -8.28914 -8.16065 -6.61758 -6.33530 -3.98429 0.86161 1.26161 2.09222 2.39681 2.56788 3.27470 3.30039 3.45442 3.64711 3.84016 4.30426 4.54963 4.70434 4.77774 4.92281 4.97723 5.17916 5.18597 5.30896 5.38757 5.48830 5.57648 5.66182 5.76222 5.99090 6.09093 6.12545 6.19526 6.31900 6.38642 6.40769 6.61879 6.70500 6.75054 6.81514 6.92720 6.98094 7.29631 7.45771 7.78512 7.92607 8.01719 8.13962 9.02805 9.67892 10.74763 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027327 B = 0.003788 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.377624 B = 7390.668539 C = 7529.718964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.102 4.102 3 C -0.067 4.067 4 C -0.107 4.107 5 C -0.130 4.130 6 C -0.111 4.111 7 C -0.132 4.132 8 C 0.178 3.822 9 N -0.710 5.710 10 C 0.120 3.880 11 C -0.130 4.130 12 C -0.152 4.152 13 C 0.125 3.875 14 O -0.225 6.225 15 C -0.385 4.385 16 H 0.104 0.896 17 C 0.061 3.939 18 N -0.886 5.886 19 Si 0.905 3.095 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.260 1.260 23 C -0.182 4.182 24 C -0.134 4.134 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.402 0.598 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.277 0.723 36 H 0.135 0.865 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.612 17.258 11.918 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.121 4.121 3 C -0.069 4.069 4 C -0.126 4.126 5 C -0.148 4.148 6 C -0.130 4.130 7 C -0.152 4.152 8 C 0.084 3.916 9 N -0.342 5.342 10 C 0.024 3.976 11 C -0.151 4.151 12 C -0.172 4.172 13 C 0.074 3.926 14 O -0.131 6.131 15 C -0.461 4.461 16 H 0.121 0.879 17 C -0.141 4.141 18 N -0.525 5.525 19 Si 0.730 3.270 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.184 1.184 23 C -0.201 4.201 24 C -0.156 4.156 25 H 0.121 0.879 26 H 0.116 0.884 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.238 0.762 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.088 0.912 36 H 0.153 0.847 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.717 17.157 11.483 21.422 hybrid contribution 0.038 -0.118 -0.357 0.378 sum -5.679 17.039 11.126 21.127 Atomic orbital electron populations 1.24314 0.95645 1.01902 1.00643 1.21793 0.94934 0.96243 0.99080 1.19475 0.92821 0.93540 1.01097 1.21216 0.99817 0.91523 1.00029 1.21027 0.94328 0.97796 1.01683 1.21058 0.94236 0.97632 1.00076 1.21426 1.00252 0.91812 1.01678 1.17516 0.89369 0.86135 0.98587 1.41484 1.58523 1.20529 1.13625 1.17378 1.02684 0.91188 0.86323 1.20208 1.04125 0.99499 0.91293 1.20017 1.05300 0.93436 0.98469 1.18998 0.95705 0.91246 0.86694 1.83576 1.75746 1.24483 1.29313 1.20714 1.39885 0.84118 1.01413 0.87873 1.24428 0.96532 0.94099 0.99071 1.69664 1.45624 1.04432 1.32775 0.86190 0.80109 0.78487 0.82163 1.20012 1.20975 1.18411 1.21089 1.05139 1.01560 0.92342 1.20299 1.04212 0.92659 0.98381 0.87862 0.88438 0.85966 0.85755 0.86108 0.86054 0.85772 0.76188 0.87051 0.86502 0.91250 0.84740 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 14.16 28.84 0.41 -1.69 16 2 C -0.10 -1.34 8.97 -37.62 -0.34 -1.67 16 3 C -0.07 -0.85 5.23 -104.84 -0.55 -1.40 16 4 C -0.11 -1.15 9.40 -39.22 -0.37 -1.52 16 5 C -0.13 -1.24 10.03 -39.61 -0.40 -1.64 16 6 C -0.11 -1.08 10.03 -39.54 -0.40 -1.48 16 7 C -0.13 -1.48 9.96 -39.42 -0.39 -1.88 16 8 C 0.18 2.28 4.69 -83.47 -0.39 1.89 16 9 N -0.71 -9.46 4.82 -8.17 -0.04 -9.50 16 10 C 0.12 1.98 5.34 -83.69 -0.45 1.53 16 11 C -0.13 -2.30 8.76 -39.40 -0.35 -2.65 16 12 C -0.15 -3.09 9.98 -39.42 -0.39 -3.48 16 13 C 0.12 2.90 6.65 -39.08 -0.26 2.64 16 14 O -0.23 -6.01 8.58 -0.01 0.00 -6.01 16 15 C -0.39 -10.97 9.94 30.87 0.31 -10.66 16 16 H 0.10 2.98 5.43 -52.48 -0.28 2.70 16 17 C 0.06 1.73 5.49 -17.52 -0.10 1.63 16 18 N -0.89 -25.93 13.96 55.48 0.77 -25.16 16 19 Si 0.90 22.06 28.62 -169.99 -4.86 17.19 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.26 -6.37 7.11 56.52 0.40 -5.96 16 23 C -0.18 -3.88 9.16 -39.42 -0.36 -4.24 16 24 C -0.13 -2.36 9.89 -39.39 -0.39 -2.75 16 25 H 0.10 1.06 8.06 -52.49 -0.42 0.64 16 26 H 0.10 0.91 6.04 -52.48 -0.32 0.60 16 27 H 0.12 1.79 6.80 -52.48 -0.36 1.43 16 28 H 0.12 1.11 6.17 -52.48 -0.32 0.79 16 29 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 30 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.40 4.55 8.84 -40.82 -0.36 4.19 16 33 H 0.11 1.87 6.69 -52.49 -0.35 1.52 16 34 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 35 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.14 3.02 5.63 -52.49 -0.30 2.72 16 37 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -30.16 317.24 -7.72 -37.88 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -3.96 Total: 8.17 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: -4.41 Total: -27.36 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.74 Total: -34.65 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: 0.00 Total: -6.01 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.86 Total: 17.19 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.16 -7.72 -37.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212610155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.729 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds