Wall clock time and date at job start Tue Mar 31 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32651 * 1 3 3 C 1.47683 * 120.00651 * 2 1 4 4 C 1.39491 * 120.18106 * 359.97438 * 3 2 1 5 5 C 1.37952 * 119.93373 * 179.72651 * 4 3 2 6 6 C 1.38455 * 120.30732 * 0.02562 * 5 4 3 7 7 C 1.38124 * 120.37380 * 0.02562 * 6 5 4 8 8 C 1.38787 * 120.05973 * 359.96210 * 7 6 5 9 9 N 1.39416 * 120.15034 * 180.02562 * 8 7 6 10 10 C 1.39778 * 119.99562 * 251.36519 * 9 8 7 11 11 C 1.38971 * 120.00912 * 7.43539 * 10 9 8 12 12 C 1.37997 * 119.99128 * 179.79277 * 11 10 9 13 13 C 1.38918 * 120.00540 * 0.45948 * 12 11 10 14 14 O 1.35783 * 119.98677 * 179.77237 * 13 12 11 15 15 C 1.34816 * 116.99452 * 185.34697 * 14 13 12 16 16 H 1.08004 * 120.00270 * 354.86639 * 15 14 13 17 17 C 1.38612 * 120.00200 * 174.86118 * 15 14 13 18 18 N 1.31581 * 120.00196 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99684 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47134 * 89.99704 * 19 17 15 21 21 H 1.48499 * 109.47199 * 209.99797 * 19 17 15 22 22 H 1.48501 * 109.47004 * 330.00134 * 19 17 15 23 23 C 1.38911 * 120.01586 * 359.79253 * 13 12 11 24 24 C 1.37995 * 120.00924 * 359.97438 * 23 13 12 25 25 H 1.07994 * 120.00657 * 180.02562 * 1 2 3 26 26 H 1.08006 * 119.99495 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.99495 * 179.97438 * 2 1 3 28 28 H 1.08008 * 120.03047 * 359.70282 * 4 3 2 29 29 H 1.08000 * 119.85060 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.81633 * 180.02562 * 6 5 4 31 31 H 1.07998 * 119.96977 * 180.02562 * 7 6 5 32 32 H 0.96998 * 120.00408 * 71.36973 * 9 8 7 33 33 H 1.08001 * 120.00604 * 0.02562 * 11 10 9 34 34 H 1.07999 * 119.99529 * 180.25519 * 12 11 10 35 35 H 0.97007 * 119.99667 * 180.02562 * 18 17 15 36 36 H 1.07994 * 119.99534 * 179.97438 * 23 13 12 37 37 H 1.07997 * 120.00577 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3265 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 1.3716 2.4892 -0.0005 5 6 2.0666 3.6808 0.0052 6 6 3.4511 3.6821 0.0109 7 6 4.1507 2.4911 0.0104 8 6 3.4670 1.2833 0.0050 9 7 4.1712 0.0801 0.0051 10 6 4.1948 -0.7158 -1.1438 11 6 3.6498 -0.2400 -2.3303 12 6 3.6772 -1.0243 -3.4654 13 6 4.2409 -2.2932 -3.4195 14 8 4.2635 -3.0665 -4.5354 15 6 4.7230 -4.3264 -4.3977 16 1 5.1291 -4.6527 -3.4516 17 6 4.6743 -5.2031 -5.4703 18 7 5.1223 -6.4329 -5.3357 19 14 3.9725 -4.6385 -7.1068 20 1 5.0603 -4.0687 -7.9417 21 1 3.3634 -5.7960 -7.8099 22 1 2.9359 -3.6019 -6.8697 23 6 4.7810 -2.7712 -2.2323 24 6 4.7583 -1.9855 -1.0981 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5399 0.9354 -0.0004 27 1 1.8665 -0.9354 0.0004 28 1 0.2915 2.4933 -0.0058 29 1 1.5283 4.6171 0.0043 30 1 3.9873 4.6197 0.0158 31 1 5.2306 2.4997 0.0154 32 1 4.6446 -0.2048 0.8023 33 1 3.2083 0.7451 -2.3651 34 1 3.2574 -0.6530 -4.3885 35 1 5.0885 -7.0463 -6.0864 36 1 5.2187 -3.7578 -2.1970 37 1 5.1778 -2.3573 -0.1751 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212610155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:11 Heat of formation + Delta-G solvation = 40.595950 kcal Electronic energy + Delta-G solvation = -20544.840376 eV Core-core repulsion = 17445.835275 eV Total energy + Delta-G solvation = -3099.005101 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.20849 -40.33147 -38.52043 -35.75642 -35.05900 -34.31851 -31.95923 -31.02935 -30.15100 -28.65274 -26.87562 -24.45171 -23.95414 -23.16126 -21.99424 -20.58645 -19.78778 -19.14740 -18.22187 -18.03933 -16.89967 -16.54936 -16.20935 -15.62169 -15.56446 -15.45031 -15.08380 -14.86064 -14.38027 -14.20166 -14.00352 -13.93387 -13.66311 -13.52001 -13.25722 -12.80129 -12.77835 -12.43045 -12.12232 -11.95149 -11.85005 -11.28296 -11.24885 -11.07223 -10.53246 -9.85519 -9.69319 -9.07638 -8.44671 -8.10323 -6.13307 0.00563 0.40917 0.51846 0.82837 1.33039 1.37695 1.53791 1.68586 2.31817 2.52302 2.81250 2.98677 3.11508 3.26751 3.85902 3.96453 4.05264 4.10545 4.19929 4.39080 4.48041 4.51037 4.52751 4.60592 4.73591 4.87460 4.94860 5.14632 5.18197 5.22374 5.35251 5.43411 5.48886 5.58818 5.61575 5.73602 5.78233 5.82405 5.89085 5.99932 6.14619 6.62126 6.90810 6.92142 7.69523 8.67456 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027327 B = 0.003788 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.377624 B = 7390.668539 C = 7529.718964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.129 4.129 3 C -0.079 4.079 4 C -0.114 4.114 5 C -0.123 4.123 6 C -0.111 4.111 7 C -0.136 4.136 8 C 0.147 3.853 9 N -0.696 5.696 10 C 0.156 3.844 11 C -0.129 4.129 12 C -0.146 4.146 13 C 0.078 3.922 14 O -0.252 6.252 15 C -0.393 4.393 16 H 0.080 0.920 17 C 0.007 3.993 18 N -0.929 5.929 19 Si 0.969 3.031 20 H -0.267 1.267 21 H -0.269 1.269 22 H -0.264 1.264 23 C -0.188 4.188 24 C -0.138 4.138 25 H 0.107 0.893 26 H 0.120 0.880 27 H 0.098 0.902 28 H 0.142 0.858 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.131 0.869 32 H 0.413 0.587 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.283 0.717 36 H 0.113 0.887 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 20.976 12.919 25.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.081 4.081 4 C -0.132 4.132 5 C -0.141 4.141 6 C -0.129 4.129 7 C -0.155 4.155 8 C 0.053 3.947 9 N -0.327 5.327 10 C 0.057 3.943 11 C -0.151 4.151 12 C -0.165 4.165 13 C 0.029 3.971 14 O -0.161 6.161 15 C -0.469 4.469 16 H 0.098 0.902 17 C -0.191 4.191 18 N -0.571 5.571 19 Si 0.792 3.208 20 H -0.192 1.192 21 H -0.194 1.194 22 H -0.188 1.188 23 C -0.208 4.208 24 C -0.160 4.160 25 H 0.125 0.875 26 H 0.138 0.862 27 H 0.116 0.884 28 H 0.160 0.840 29 H 0.168 0.832 30 H 0.166 0.834 31 H 0.149 0.851 32 H 0.251 0.749 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.092 0.908 36 H 0.131 0.869 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.053 20.931 12.553 25.406 hybrid contribution 0.373 -0.953 -0.310 1.069 sum -6.680 19.978 12.243 24.365 Atomic orbital electron populations 1.24545 0.95104 1.03195 0.98204 1.21727 0.95694 0.95800 1.01475 1.19556 0.92796 0.94010 1.01761 1.21481 1.00865 0.91187 0.99709 1.21424 0.94460 0.98583 0.99589 1.21411 0.94628 0.98100 0.98807 1.21565 1.00787 0.91794 1.01395 1.17710 0.89696 0.86009 1.01241 1.41440 1.58047 1.20460 1.12785 1.17445 0.99148 0.90561 0.87101 1.20344 1.04110 0.99871 0.90789 1.20213 1.04244 0.92327 0.99760 1.19430 0.98527 0.92353 0.86781 1.83508 1.77731 1.23824 1.31010 1.20689 1.39944 0.85414 1.00874 0.90224 1.25228 0.97132 0.94168 1.02523 1.69748 1.47675 1.05554 1.34087 0.85233 0.79377 0.78229 0.77980 1.19174 1.19376 1.18843 1.21067 1.05197 1.01224 0.93313 1.20479 1.04417 0.92821 0.98263 0.87473 0.86240 0.88374 0.84021 0.83155 0.83390 0.85108 0.74934 0.85286 0.85649 0.90795 0.86950 0.84252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.48 14.16 66.65 0.94 -2.54 16 2 C -0.13 -3.15 8.97 23.60 0.21 -2.94 16 3 C -0.08 -1.80 5.23 -20.00 -0.10 -1.90 16 4 C -0.11 -2.02 9.40 22.50 0.21 -1.81 16 5 C -0.12 -1.78 10.03 22.25 0.22 -1.56 16 6 C -0.11 -1.69 10.03 22.29 0.22 -1.47 16 7 C -0.14 -2.62 9.96 22.37 0.22 -2.39 16 8 C 0.15 3.38 4.69 38.54 0.18 3.56 16 9 N -0.70 -17.13 4.82 -179.75 -0.87 -17.99 16 10 C 0.16 4.93 5.34 38.23 0.20 5.13 16 11 C -0.13 -4.42 8.76 22.39 0.20 -4.22 16 12 C -0.15 -5.90 9.98 22.38 0.22 -5.68 16 13 C 0.08 3.74 6.65 22.59 0.15 3.89 16 14 O -0.25 -14.08 8.58 -22.96 -0.20 -14.27 16 15 C -0.39 -23.62 9.94 67.91 0.68 -22.94 16 16 H 0.08 4.99 5.43 -2.91 -0.02 4.97 16 17 C 0.01 0.40 5.49 84.82 0.47 0.87 16 18 N -0.93 -56.57 13.96 21.61 0.30 -56.27 16 19 Si 0.97 46.63 28.62 68.60 1.96 48.60 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 23 C -0.19 -8.38 9.16 22.37 0.20 -8.18 16 24 C -0.14 -4.82 9.89 22.39 0.22 -4.60 16 25 H 0.11 2.02 8.06 -2.91 -0.02 1.99 16 26 H 0.12 1.82 6.04 -2.91 -0.02 1.80 16 27 H 0.10 2.82 6.80 -2.91 -0.02 2.80 16 28 H 0.14 1.93 6.17 -2.91 -0.02 1.91 16 29 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 30 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 31 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.41 8.44 8.84 -92.71 -0.82 7.62 16 33 H 0.13 4.01 6.69 -2.91 -0.02 3.99 16 34 H 0.13 4.77 8.06 -2.91 -0.02 4.74 16 35 H 0.28 15.81 8.31 -92.70 -0.77 15.04 16 36 H 0.11 5.46 5.63 -2.91 -0.02 5.44 16 37 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -68.38 317.24 5.94 -62.44 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.28 Total: 24.27 kcal Atomic # 6 Polarization: -51.22 SS G_CDS: 4.45 Total: -46.77 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -0.56 Total: -74.26 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.20 Total: -14.27 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.96 Total: 48.60 kcal Total: -68.38 5.94 -62.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212610155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.037 kcal (2) G-P(sol) polarization free energy of solvation -68.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds