Wall clock time and date at job start Tue Mar 31 2020 05:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00348 * 2 1 4 4 H 1.48500 * 109.47054 * 239.99715 * 3 2 1 5 5 H 1.48497 * 109.46951 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47065 * 119.99778 * 3 2 1 7 7 C 1.37882 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00019 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00360 * 0.02562 * 7 2 1 10 10 N 1.46888 * 109.47551 * 184.63487 * 9 7 2 11 11 C 1.46896 * 111.00397 * 163.69231 * 10 9 7 12 12 C 1.50702 * 109.47496 * 186.88124 * 11 10 9 13 13 O 1.34626 * 125.85212 * 240.29716 * 12 11 10 14 14 C 1.34266 * 109.53526 * 179.97438 * 13 12 11 15 15 C 1.34479 * 108.57987 * 0.02562 * 14 13 12 16 16 C 1.35021 * 125.85147 * 60.62078 * 12 11 10 17 17 S 1.76199 * 126.64377 * 359.97438 * 16 12 11 18 18 C 1.46905 * 111.00177 * 287.64990 * 10 9 7 19 19 C 1.54269 * 110.02948 * 270.42294 * 18 10 9 20 20 C 1.54964 * 104.15940 * 217.13609 * 19 18 10 21 21 C 1.54891 * 102.77906 * 37.88581 * 20 19 18 22 22 C 1.53877 * 110.03338 * 153.20796 * 18 10 9 23 23 H 0.97000 * 119.99666 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46623 * 64.63502 * 9 7 2 25 25 H 1.08997 * 109.46840 * 304.63984 * 9 7 2 26 26 H 1.09002 * 109.46906 * 66.87867 * 11 10 9 27 27 H 1.09001 * 109.46894 * 306.88430 * 11 10 9 28 28 H 1.08007 * 125.71107 * 179.97438 * 14 13 12 29 29 H 1.07997 * 126.56988 * 179.97438 * 15 14 13 30 30 H 1.34507 * 102.99825 * 270.22354 * 17 16 12 31 31 H 1.08997 * 110.01281 * 31.81393 * 18 10 9 32 32 H 1.08998 * 110.48418 * 335.78336 * 19 18 10 33 33 H 1.08996 * 110.48546 * 98.42141 * 19 18 10 34 34 H 1.09001 * 110.71641 * 279.57096 * 20 19 18 35 35 H 1.09002 * 110.92131 * 156.29918 * 20 19 18 36 36 H 1.08997 * 110.48390 * 203.40533 * 21 20 19 37 37 H 1.08998 * 110.59348 * 80.82094 * 21 20 19 38 38 H 1.08999 * 110.02494 * 238.56740 * 22 18 10 39 39 H 1.08996 * 110.03534 * 359.97438 * 22 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2015 -3.6135 0.1131 11 6 1.5159 -4.8532 0.5015 12 6 2.5367 -5.9286 0.7711 13 8 2.6356 -7.1028 0.1200 14 6 3.6592 -7.8107 0.6239 15 6 4.2309 -7.0956 1.6089 16 6 3.5049 -5.8821 1.7110 17 16 3.8106 -4.5659 2.8418 18 6 2.9498 -3.7955 -1.1379 19 6 2.1961 -4.7689 -2.0677 20 6 3.3203 -5.5886 -2.7499 21 6 4.3485 -5.7773 -1.6069 22 6 4.3179 -4.4362 -0.8453 23 1 -0.4850 0.8401 -0.0004 24 1 0.6884 -2.5939 -0.9283 25 1 0.5632 -2.5216 0.8458 26 1 0.8566 -5.1721 -0.3058 27 1 0.9280 -4.6763 1.4022 28 1 3.9707 -8.7908 0.2940 29 1 5.0779 -7.3910 2.2103 30 1 4.6725 -3.7828 2.1687 31 1 3.0859 -2.8348 -1.6344 32 1 1.5452 -5.4232 -1.4878 33 1 1.6201 -4.2175 -2.8108 34 1 3.7591 -5.0286 -3.5757 35 1 2.9450 -6.5521 -3.0948 36 1 5.3424 -5.9620 -2.0146 37 1 4.0479 -6.5950 -0.9519 38 1 5.1179 -3.7866 -1.2007 39 1 4.4269 -4.6116 0.2249 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237177970.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:17 Heat of formation + Delta-G solvation = 44.816585 kcal Electronic energy + Delta-G solvation = -21363.931300 eV Core-core repulsion = 18400.553170 eV Total energy + Delta-G solvation = -2963.378129 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.76039 -38.68150 -34.79001 -32.99589 -32.55679 -30.35641 -28.44690 -27.49338 -26.76239 -24.24076 -21.93665 -21.56350 -20.81010 -20.35694 -18.75621 -17.84668 -16.61926 -16.28689 -16.08639 -15.33202 -15.22292 -14.68534 -14.36335 -13.92220 -13.21086 -13.06832 -12.89675 -12.74300 -12.58200 -12.15920 -11.81247 -11.46881 -11.18317 -11.02373 -10.89709 -10.76328 -10.72744 -10.55448 -10.33931 -9.97352 -9.87186 -9.80825 -9.47443 -9.32437 -8.44336 -8.17485 -7.58882 -7.21120 -6.04027 -4.04755 1.70381 2.11817 2.54564 3.08988 3.32429 3.36794 3.39861 3.56522 4.41263 4.79377 4.83201 5.02641 5.09434 5.10511 5.25019 5.32491 5.47687 5.63986 5.83512 5.85330 5.88356 5.96337 6.01443 6.05884 6.07365 6.22130 6.24882 6.27069 6.39894 6.45331 6.63080 6.68624 6.83416 7.10918 7.25009 7.28308 7.76815 8.04005 8.14840 8.46926 9.00970 9.58810 11.06570 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020393 B = 0.006384 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.673272 B = 4384.863807 C = 4965.157035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.196 3.804 10 N -0.514 5.514 11 C 0.115 3.885 12 C 0.082 3.918 13 O -0.171 6.171 14 C -0.058 4.058 15 C -0.177 4.177 16 C -0.186 4.186 17 S -0.077 6.077 18 C 0.084 3.916 19 C -0.168 4.168 20 C -0.114 4.114 21 C -0.144 4.144 22 C -0.126 4.126 23 H 0.262 0.738 24 H -0.007 1.007 25 H 0.037 0.963 26 H 0.058 0.942 27 H 0.106 0.894 28 H 0.200 0.800 29 H 0.150 0.850 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.638 -14.887 -0.384 16.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.072 3.928 10 N -0.238 5.238 11 C -0.012 4.012 12 C 0.027 3.973 13 O -0.067 6.067 14 C -0.125 4.125 15 C -0.199 4.199 16 C -0.300 4.300 17 S 0.078 5.922 18 C -0.025 4.025 19 C -0.206 4.206 20 C -0.152 4.152 21 C -0.182 4.182 22 C -0.164 4.164 23 H 0.072 0.928 24 H 0.011 0.989 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.124 0.876 28 H 0.217 0.783 29 H 0.168 0.832 30 H 0.039 0.961 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.628 -14.124 0.504 15.610 hybrid contribution 0.668 0.539 -1.881 2.067 sum 7.296 -13.586 -1.376 15.482 Atomic orbital electron populations 1.69934 1.05964 1.26894 1.50905 1.24934 0.94832 0.99119 0.95473 0.86595 0.79482 0.82952 0.78580 1.20443 1.21321 1.20193 1.21018 0.93316 0.89704 1.50059 0.92201 1.19752 0.90122 0.86716 0.96193 1.62434 1.28690 1.02340 1.30306 1.20842 0.91240 0.87104 1.02058 1.23152 0.97965 0.85278 0.90867 1.84189 1.44710 1.26474 1.51309 1.23682 0.91124 0.98853 0.98851 1.21966 1.02575 0.94668 1.00656 1.21165 1.02928 0.99968 1.05907 1.85328 1.63420 1.23109 1.20310 1.22322 0.92396 0.98530 0.89253 1.23256 0.98633 0.99173 0.99562 1.22326 0.96379 0.99100 0.97390 1.22821 0.98292 0.99105 0.97944 1.22481 0.97335 0.95546 1.01088 0.92847 0.98934 0.94471 0.92474 0.87604 0.78345 0.83244 0.96067 0.89004 0.90198 0.91943 0.92255 0.92489 0.93070 0.89999 0.92909 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.50 -13.68 8.39 -34.44 -0.29 -13.97 16 8 H 0.06 1.64 7.71 -52.48 -0.40 1.24 16 9 C 0.20 4.84 4.67 -4.98 -0.02 4.82 16 10 N -0.51 -10.40 4.09 -228.18 -0.93 -11.34 16 11 C 0.12 2.02 4.68 -4.98 -0.02 1.99 16 12 C 0.08 1.30 3.71 -35.45 -0.13 1.16 16 13 O -0.17 -2.39 8.65 4.92 0.04 -2.35 16 14 C -0.06 -0.65 10.04 29.40 0.30 -0.36 16 15 C -0.18 -2.24 10.83 -39.56 -0.43 -2.67 16 16 C -0.19 -2.88 4.31 -39.38 -0.17 -3.05 16 17 S -0.08 -1.28 25.40 -107.50 -2.73 -4.01 16 18 C 0.08 1.59 2.68 -66.59 -0.18 1.41 16 19 C -0.17 -2.78 5.79 -25.03 -0.14 -2.93 16 20 C -0.11 -1.63 6.91 -24.70 -0.17 -1.80 16 21 C -0.14 -2.09 6.22 -25.07 -0.16 -2.24 16 22 C -0.13 -2.14 5.68 -25.61 -0.15 -2.29 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H -0.01 -0.19 8.01 -51.93 -0.42 -0.60 16 25 H 0.04 0.98 7.85 -51.93 -0.41 0.57 16 26 H 0.06 0.97 5.50 -51.93 -0.29 0.68 16 27 H 0.11 1.85 7.93 -51.93 -0.41 1.44 16 28 H 0.20 1.44 8.06 -52.48 -0.42 1.02 16 29 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.08 1.33 8.35 97.61 0.81 2.15 16 31 H 0.09 1.98 7.07 -51.93 -0.37 1.61 16 32 H 0.08 1.31 4.01 -51.93 -0.21 1.10 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.14 2.56 -51.93 -0.13 1.00 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.26 3.68 -51.93 -0.19 1.06 16 LS Contribution 309.49 15.07 4.66 4.66 Total: -1.00 -28.67 309.49 -9.01 -37.68 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -4.10 Total: 2.57 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -1.66 Total: -18.40 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.20 Total: -36.67 kcal Atomic # 8 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.28 SS G_CDS: -2.73 Total: -4.01 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.67 -9.01 -37.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237177970.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.496 kcal (2) G-P(sol) polarization free energy of solvation -28.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds