Wall clock time and date at job start Tue Mar 31 2020 05:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21281 * 120.00546 * 2 1 4 4 C 1.47026 * 119.99876 * 179.97438 * 2 1 3 5 5 C 1.40042 * 120.02336 * 180.02562 * 4 2 1 6 6 C 1.36563 * 119.97658 * 179.97438 * 5 4 2 7 7 C 1.39847 * 120.02403 * 359.97438 * 6 5 4 8 8 C 1.47710 * 119.97886 * 179.97438 * 7 6 5 9 9 N 1.32635 * 119.99781 * 316.60581 * 8 7 6 10 10 C 1.31674 * 121.72436 * 180.26303 * 9 8 7 11 11 C 1.50703 * 119.23606 * 179.71434 * 10 9 8 12 12 C 1.38945 * 121.51704 * 359.43162 * 10 9 8 13 13 C 1.36837 * 119.80905 * 0.28416 * 12 10 9 14 14 C 1.41190 * 118.38711 * 359.97438 * 13 12 10 15 15 C 1.40806 * 120.72016 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99564 * 152.80486 * 15 14 13 17 17 C 1.40182 * 120.00155 * 332.80713 * 15 14 13 18 18 N 1.30697 * 120.00036 * 345.75173 * 17 15 14 19 19 Si 1.86804 * 119.99970 * 165.75660 * 17 15 14 20 20 H 1.48499 * 109.47328 * 89.99705 * 19 17 15 21 21 H 1.48498 * 109.47010 * 209.99863 * 19 17 15 22 22 H 1.48499 * 109.47057 * 329.99770 * 19 17 15 23 23 C 1.39859 * 120.04780 * 0.27510 * 7 6 5 24 24 C 1.36570 * 120.01682 * 359.48490 * 23 7 6 25 25 H 1.09000 * 109.47578 * 240.00648 * 1 2 3 26 26 H 1.09002 * 109.47342 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47069 * 119.99937 * 1 2 3 28 28 H 1.08000 * 120.01446 * 359.95908 * 5 4 2 29 29 H 1.08002 * 119.98380 * 180.02562 * 6 5 4 30 30 H 1.09004 * 109.46270 * 269.72715 * 11 10 9 31 31 H 1.09000 * 109.47477 * 29.72737 * 11 10 9 32 32 H 1.09001 * 109.46788 * 149.73305 * 11 10 9 33 33 H 1.08003 * 120.09242 * 180.25547 * 12 10 9 34 34 H 1.07994 * 120.80849 * 180.02562 * 13 12 10 35 35 H 0.97005 * 120.00099 * 180.02562 * 18 17 15 36 36 H 1.07989 * 119.99261 * 179.71807 * 23 7 6 37 37 H 1.07997 * 120.00946 * 180.25312 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 6 2.2420 -1.2733 0.0006 5 6 3.6425 -1.2739 0.0011 6 6 4.3243 -2.4571 0.0022 7 6 3.6245 -3.6680 0.0033 8 6 4.3630 -4.9472 0.0038 9 7 5.4171 -5.1047 -0.7856 10 6 6.0970 -6.2319 -0.8161 11 6 7.2821 -6.3519 -1.7394 12 6 5.7505 -7.3112 -0.0126 13 6 4.6766 -7.2148 0.8299 14 6 3.9486 -6.0053 0.8539 15 6 2.8348 -5.8527 1.7017 16 1 2.5554 -4.8710 2.0547 17 6 2.0888 -6.9750 2.0877 18 7 2.2412 -8.1095 1.4569 19 14 0.8766 -6.8490 3.5034 20 1 -0.4556 -6.4522 2.9807 21 1 0.7699 -8.1653 4.1824 22 1 1.3518 -5.8291 4.4726 23 6 2.2260 -3.6685 -0.0026 24 6 1.5422 -2.4863 0.0013 25 1 -0.3634 -0.5137 0.8900 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 4.1831 -0.3390 0.0004 29 1 5.4043 -2.4577 0.0030 30 1 6.9530 -6.7366 -2.7047 31 1 7.7378 -5.3711 -1.8752 32 1 8.0125 -7.0351 -1.3059 33 1 6.3269 -8.2236 -0.0532 34 1 4.3932 -8.0434 1.4619 35 1 1.7246 -8.8860 1.7237 36 1 1.6865 -4.6041 -0.0063 37 1 0.4623 -2.4869 0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239629877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:06 Heat of formation + Delta-G solvation = -2.481787 kcal Electronic energy + Delta-G solvation = -20809.216354 eV Core-core repulsion = 17708.343262 eV Total energy + Delta-G solvation = -3100.873092 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.65644 -38.77854 -37.39816 -34.50521 -32.54335 -31.29577 -30.78293 -30.18671 -28.70156 -27.84107 -24.85649 -23.33914 -21.95772 -21.00106 -20.51484 -19.35777 -17.58341 -16.69074 -15.76236 -15.53488 -15.16952 -14.75792 -14.51293 -14.13070 -13.85228 -13.62510 -13.22438 -13.02291 -12.88446 -12.45625 -12.27277 -12.08581 -12.01829 -11.70397 -11.68825 -11.56798 -11.27865 -11.09880 -11.07008 -10.68533 -10.45418 -9.98882 -9.55878 -9.46019 -8.71679 -8.49457 -8.19944 -8.13098 -7.45682 -7.04780 -4.65075 1.01113 2.05379 2.35252 2.65237 2.90163 2.93439 2.99537 3.06931 3.68682 4.33005 4.36763 4.43913 5.14695 5.24146 5.34412 5.40146 5.46253 5.50316 5.62466 5.90694 5.93609 5.98324 6.02622 6.14564 6.20762 6.33610 6.42647 6.48854 6.55722 6.68794 6.78168 6.86018 6.88235 6.92540 7.11281 7.29619 7.44856 7.55079 7.70238 7.77316 7.79190 8.21654 8.42933 8.50684 9.44542 9.82379 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012485 B = 0.006604 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.241203 B = 4238.778088 C = 6227.812673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.399 3.601 3 O -0.478 6.478 4 C -0.208 4.208 5 C -0.062 4.062 6 C -0.130 4.130 7 C 0.069 3.931 8 C -0.003 4.003 9 N -0.444 5.444 10 C -0.005 4.005 11 C -0.075 4.075 12 C -0.140 4.140 13 C -0.125 4.125 14 C 0.087 3.913 15 C -0.437 4.437 16 H 0.091 0.909 17 C 0.074 3.926 18 N -0.781 5.781 19 Si 0.910 3.090 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.257 1.257 23 C -0.115 4.115 24 C -0.077 4.077 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.287 0.713 36 H 0.140 0.860 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.042 3.617 -0.312 4.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.279 3.721 3 O -0.356 6.356 4 C -0.209 4.209 5 C -0.080 4.080 6 C -0.149 4.149 7 C 0.068 3.932 8 C -0.139 4.139 9 N -0.153 5.153 10 C -0.148 4.148 11 C -0.132 4.132 12 C -0.161 4.161 13 C -0.151 4.151 14 C 0.082 3.918 15 C -0.465 4.465 16 H 0.109 0.891 17 C -0.146 4.146 18 N -0.405 5.405 19 Si 0.733 3.267 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.180 1.180 23 C -0.134 4.134 24 C -0.095 4.095 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.145 0.855 35 H 0.098 0.902 36 H 0.158 0.842 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.575 4.584 -0.846 5.325 hybrid contribution -0.871 -1.126 1.178 1.848 sum -3.446 3.458 0.332 4.893 Atomic orbital electron populations 1.22233 0.94528 1.04379 1.04498 1.22451 0.91348 0.87906 0.70357 1.90487 1.72313 1.34619 1.38171 1.20277 0.94504 0.94141 1.12001 1.20932 0.93018 0.98154 0.95884 1.21004 1.00167 0.91375 1.02325 1.18770 0.92362 0.91566 0.90501 1.19430 0.98348 0.95000 1.01143 1.66820 1.05086 1.24025 1.19327 1.20281 1.00434 0.90932 1.03168 1.20297 0.94601 1.01039 0.97307 1.21294 0.98429 0.97964 0.98395 1.21428 0.94129 0.99305 1.00198 1.18319 0.92159 0.90950 0.90380 1.19677 1.08603 0.94954 1.23260 0.89130 1.26048 0.97781 0.94412 0.96371 1.69712 1.34522 1.01888 1.34333 0.86248 0.80238 0.79181 0.81012 1.18936 1.19815 1.18047 1.21218 0.93820 0.98518 0.99817 1.21001 0.99361 0.91513 0.97612 0.88964 0.90331 0.89015 0.85983 0.85916 0.93074 0.92512 0.92826 0.88160 0.85453 0.90163 0.84219 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.11 8.92 36.00 0.32 -1.79 16 2 C 0.40 6.03 7.22 -30.75 -0.22 5.80 16 3 O -0.48 -8.59 17.06 5.56 0.09 -8.49 16 4 C -0.21 -3.46 5.87 -104.98 -0.62 -4.07 16 5 C -0.06 -1.10 9.54 -39.51 -0.38 -1.47 16 6 C -0.13 -2.53 9.59 -39.58 -0.38 -2.91 16 7 C 0.07 1.47 5.26 -104.82 -0.55 0.92 16 8 C 0.00 -0.06 6.42 -82.25 -0.53 -0.59 16 9 N -0.44 -10.50 10.04 -5.45 -0.05 -10.56 16 10 C -0.01 -0.11 6.79 -82.40 -0.56 -0.67 16 11 C -0.07 -1.30 10.15 36.01 0.37 -0.94 16 12 C -0.14 -3.09 9.65 -39.83 -0.38 -3.47 16 13 C -0.12 -2.99 8.73 -38.97 -0.34 -3.33 16 14 C 0.09 2.12 5.55 -106.40 -0.59 1.53 16 15 C -0.44 -10.22 6.76 -37.88 -0.26 -10.48 16 16 H 0.09 2.07 6.42 -52.48 -0.34 1.73 16 17 C 0.07 1.65 5.22 -17.30 -0.09 1.56 16 18 N -0.78 -17.92 10.97 55.56 0.61 -17.31 16 19 Si 0.91 16.69 29.58 -169.99 -5.03 11.66 16 20 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 21 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 22 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 23 C -0.11 -2.21 7.76 -39.58 -0.31 -2.52 16 24 C -0.08 -1.23 9.41 -39.51 -0.37 -1.60 16 25 H 0.09 0.84 8.08 -51.93 -0.42 0.43 16 26 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 27 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 28 H 0.12 2.04 7.63 -52.49 -0.40 1.64 16 29 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 34 H 0.13 3.07 6.34 -52.49 -0.33 2.73 16 35 H 0.29 5.97 8.29 -40.82 -0.34 5.63 16 36 H 0.14 2.80 6.75 -52.49 -0.35 2.45 16 37 H 0.12 1.55 7.02 -52.49 -0.37 1.18 16 LS Contribution 319.02 15.07 4.81 4.81 Total: -1.00 -27.10 319.02 -8.76 -35.86 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -4.30 Total: 8.06 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -4.89 Total: -24.03 kcal Atomic # 7 Polarization: -28.42 SS G_CDS: 0.55 Total: -27.87 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.10 -8.76 -35.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239629877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.380 kcal (2) G-P(sol) polarization free energy of solvation -27.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds