Wall clock time and date at job start Tue Mar 31 2020 05:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21281 * 120.00546 * 2 1 4 4 C 1.47026 * 119.99876 * 179.97438 * 2 1 3 5 5 C 1.40042 * 120.02336 * 180.02562 * 4 2 1 6 6 C 1.36563 * 119.97658 * 179.97438 * 5 4 2 7 7 C 1.39847 * 120.02403 * 359.97438 * 6 5 4 8 8 C 1.47710 * 119.97886 * 179.97438 * 7 6 5 9 9 N 1.32635 * 119.99781 * 316.60581 * 8 7 6 10 10 C 1.31674 * 121.72436 * 180.26303 * 9 8 7 11 11 C 1.50703 * 119.23606 * 179.71434 * 10 9 8 12 12 C 1.38945 * 121.51704 * 359.43162 * 10 9 8 13 13 C 1.36837 * 119.80905 * 0.28416 * 12 10 9 14 14 C 1.41190 * 118.38711 * 359.97438 * 13 12 10 15 15 C 1.40806 * 120.72016 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99564 * 152.80486 * 15 14 13 17 17 C 1.40182 * 120.00155 * 332.80713 * 15 14 13 18 18 N 1.30697 * 120.00036 * 345.75173 * 17 15 14 19 19 Si 1.86804 * 119.99970 * 165.75660 * 17 15 14 20 20 H 1.48499 * 109.47328 * 89.99705 * 19 17 15 21 21 H 1.48498 * 109.47010 * 209.99863 * 19 17 15 22 22 H 1.48499 * 109.47057 * 329.99770 * 19 17 15 23 23 C 1.39859 * 120.04780 * 0.27510 * 7 6 5 24 24 C 1.36570 * 120.01682 * 359.48490 * 23 7 6 25 25 H 1.09000 * 109.47578 * 240.00648 * 1 2 3 26 26 H 1.09002 * 109.47342 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47069 * 119.99937 * 1 2 3 28 28 H 1.08000 * 120.01446 * 359.95908 * 5 4 2 29 29 H 1.08002 * 119.98380 * 180.02562 * 6 5 4 30 30 H 1.09004 * 109.46270 * 269.72715 * 11 10 9 31 31 H 1.09000 * 109.47477 * 29.72737 * 11 10 9 32 32 H 1.09001 * 109.46788 * 149.73305 * 11 10 9 33 33 H 1.08003 * 120.09242 * 180.25547 * 12 10 9 34 34 H 1.07994 * 120.80849 * 180.02562 * 13 12 10 35 35 H 0.97005 * 120.00099 * 180.02562 * 18 17 15 36 36 H 1.07989 * 119.99261 * 179.71807 * 23 7 6 37 37 H 1.07997 * 120.00946 * 180.25312 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 6 2.2420 -1.2733 0.0006 5 6 3.6425 -1.2739 0.0011 6 6 4.3243 -2.4571 0.0022 7 6 3.6245 -3.6680 0.0033 8 6 4.3630 -4.9472 0.0038 9 7 5.4171 -5.1047 -0.7856 10 6 6.0970 -6.2319 -0.8161 11 6 7.2821 -6.3519 -1.7394 12 6 5.7505 -7.3112 -0.0126 13 6 4.6766 -7.2148 0.8299 14 6 3.9486 -6.0053 0.8539 15 6 2.8348 -5.8527 1.7017 16 1 2.5554 -4.8710 2.0547 17 6 2.0888 -6.9750 2.0877 18 7 2.2412 -8.1095 1.4569 19 14 0.8766 -6.8490 3.5034 20 1 -0.4556 -6.4522 2.9807 21 1 0.7699 -8.1653 4.1824 22 1 1.3518 -5.8291 4.4726 23 6 2.2260 -3.6685 -0.0026 24 6 1.5422 -2.4863 0.0013 25 1 -0.3634 -0.5137 0.8900 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 4.1831 -0.3390 0.0004 29 1 5.4043 -2.4577 0.0030 30 1 6.9530 -6.7366 -2.7047 31 1 7.7378 -5.3711 -1.8752 32 1 8.0125 -7.0351 -1.3059 33 1 6.3269 -8.2236 -0.0532 34 1 4.3932 -8.0434 1.4619 35 1 1.7246 -8.8860 1.7237 36 1 1.6865 -4.6041 -0.0063 37 1 0.4623 -2.4869 0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239629877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:05 Heat of formation + Delta-G solvation = -15.338959 kcal Electronic energy + Delta-G solvation = -20809.773883 eV Core-core repulsion = 17708.343262 eV Total energy + Delta-G solvation = -3101.430621 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.07966 -40.33214 -38.85154 -36.19549 -34.07020 -32.86194 -32.29757 -31.58627 -29.93617 -29.45471 -26.42251 -24.87868 -23.44522 -22.60748 -22.12244 -20.69041 -19.30268 -18.06026 -17.41874 -17.00966 -16.56347 -16.09082 -15.89473 -15.70787 -15.29151 -15.07820 -14.72264 -14.46889 -14.36985 -14.02897 -13.66599 -13.32019 -13.27274 -13.09845 -12.98374 -12.94204 -12.77928 -12.65507 -12.62500 -12.17310 -11.88810 -11.66103 -11.18199 -10.71697 -10.39355 -9.96271 -9.93315 -9.77281 -9.12642 -8.71042 -6.40572 -0.39006 0.60386 0.72746 1.01539 1.40163 1.49070 1.54803 1.60106 2.16515 2.67775 2.95739 3.22061 3.60868 3.76388 3.96377 4.08861 4.27550 4.34031 4.44033 4.55605 4.57375 4.61615 4.73647 4.74622 4.91445 4.93798 4.96633 5.01456 5.12325 5.15497 5.23262 5.26042 5.32035 5.44408 5.55698 5.72751 5.80845 5.94991 6.03150 6.08305 6.47087 6.60130 6.69939 6.76464 7.69752 8.19335 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012485 B = 0.006604 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.241203 B = 4238.778088 C = 6227.812673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.402 3.598 3 O -0.510 6.510 4 C -0.205 4.205 5 C -0.068 4.068 6 C -0.136 4.136 7 C 0.038 3.962 8 C -0.018 4.018 9 N -0.465 5.465 10 C -0.019 4.019 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.148 4.148 14 C 0.058 3.942 15 C -0.454 4.454 16 H 0.089 0.911 17 C 0.041 3.959 18 N -0.810 5.810 19 Si 0.976 3.024 20 H -0.252 1.252 21 H -0.268 1.268 22 H -0.260 1.260 23 C -0.123 4.123 24 C -0.057 4.057 25 H 0.115 0.885 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.130 0.870 29 H 0.114 0.886 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.295 0.705 36 H 0.127 0.873 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.952 4.428 -0.164 6.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.284 3.716 3 O -0.390 6.390 4 C -0.206 4.206 5 C -0.086 4.086 6 C -0.155 4.155 7 C 0.037 3.963 8 C -0.155 4.155 9 N -0.173 5.173 10 C -0.162 4.162 11 C -0.127 4.127 12 C -0.165 4.165 13 C -0.174 4.174 14 C 0.053 3.947 15 C -0.482 4.482 16 H 0.107 0.893 17 C -0.176 4.176 18 N -0.435 5.435 19 Si 0.797 3.203 20 H -0.176 1.176 21 H -0.192 1.192 22 H -0.184 1.184 23 C -0.142 4.142 24 C -0.075 4.075 25 H 0.133 0.867 26 H 0.107 0.893 27 H 0.134 0.866 28 H 0.148 0.852 29 H 0.132 0.868 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.106 0.894 36 H 0.145 0.855 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.477 5.389 -0.716 7.042 hybrid contribution -0.236 -1.308 1.063 1.702 sum -4.713 4.080 0.347 6.244 Atomic orbital electron populations 1.22273 0.90169 1.05919 1.06587 1.22971 0.93490 0.86305 0.68827 1.90492 1.73490 1.35371 1.39610 1.20668 0.94155 0.95581 1.10190 1.21076 0.94114 0.97656 0.95766 1.20935 0.99888 0.91630 1.03053 1.18873 0.93406 0.91073 0.92953 1.19894 0.98624 0.96088 1.00866 1.66934 1.05634 1.24947 1.19827 1.21063 1.01299 0.90384 1.03465 1.20349 0.93320 1.02031 0.96988 1.21599 0.98052 0.99138 0.97705 1.21487 0.95350 0.99263 1.01316 1.18662 0.93145 0.91587 0.91268 1.19765 1.09000 0.95481 1.23963 0.89338 1.26793 0.99064 0.93641 0.98145 1.69754 1.35560 1.02639 1.35518 0.85257 0.78324 0.79092 0.77666 1.17592 1.19240 1.18428 1.21187 0.93041 0.99335 1.00658 1.21340 1.01373 0.89786 0.95028 0.86709 0.89316 0.86626 0.85248 0.86766 0.91856 0.92232 0.90243 0.85435 0.86396 0.89426 0.85491 0.81439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.18 8.92 71.23 0.64 -2.55 16 2 C 0.40 10.97 7.22 27.99 0.20 11.17 16 3 O -0.51 -17.37 17.06 -3.03 -0.05 -17.42 16 4 C -0.20 -6.39 5.87 -20.10 -0.12 -6.51 16 5 C -0.07 -2.40 9.54 22.32 0.21 -2.18 16 6 C -0.14 -5.45 9.59 22.27 0.21 -5.24 16 7 C 0.04 1.66 5.26 -19.99 -0.11 1.55 16 8 C -0.02 -0.89 6.42 42.44 0.27 -0.62 16 9 N -0.46 -22.64 10.04 -171.16 -1.72 -24.36 16 10 C -0.02 -0.86 6.79 42.75 0.29 -0.57 16 11 C -0.07 -2.34 10.15 71.24 0.72 -1.62 16 12 C -0.14 -6.47 9.65 22.11 0.21 -6.26 16 13 C -0.15 -7.36 8.73 22.67 0.20 -7.16 16 14 C 0.06 2.96 5.55 -21.02 -0.12 2.84 16 15 C -0.45 -21.87 6.76 23.37 0.16 -21.71 16 16 H 0.09 4.16 6.42 -2.91 -0.02 4.14 16 17 C 0.04 1.85 5.22 85.33 0.45 2.29 16 18 N -0.81 -37.88 10.97 21.87 0.24 -37.64 16 19 Si 0.98 33.76 29.58 68.60 2.03 35.79 16 20 H -0.25 -8.15 7.11 99.48 0.71 -7.44 16 21 H -0.27 -8.95 7.11 99.48 0.71 -8.24 16 22 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 23 C -0.12 -4.73 7.76 22.27 0.17 -4.56 16 24 C -0.06 -1.71 9.41 22.32 0.21 -1.50 16 25 H 0.11 1.46 8.08 -2.39 -0.02 1.44 16 26 H 0.09 1.36 8.12 -2.39 -0.02 1.34 16 27 H 0.12 1.44 8.08 -2.39 -0.02 1.42 16 28 H 0.13 4.30 7.63 -2.91 -0.02 4.28 16 29 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 30 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 33 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.12 5.94 6.34 -2.91 -0.02 5.92 16 35 H 0.29 12.37 8.29 -92.70 -0.77 11.60 16 36 H 0.13 5.17 6.75 -2.92 -0.02 5.15 16 37 H 0.17 3.43 7.02 -2.91 -0.02 3.41 16 Total: -1.00 -61.31 319.02 5.20 -56.11 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 1.09 Total: 30.14 kcal Atomic # 6 Polarization: -46.23 SS G_CDS: 3.61 Total: -42.62 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -1.48 Total: -62.00 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.05 Total: -17.42 kcal Atomic # 14 Polarization: 33.76 SS G_CDS: 2.03 Total: 35.79 kcal Total: -61.31 5.20 -56.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239629877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.772 kcal (2) G-P(sol) polarization free energy of solvation -61.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds