Wall clock time and date at job start Tue Mar 31 2020 05:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21257 * 119.99995 * 2 1 4 4 C 1.47187 * 119.99932 * 180.02562 * 2 1 3 5 5 C 1.39985 * 120.10313 * 359.97438 * 4 2 1 6 6 C 1.38015 * 120.11897 * 180.02562 * 5 4 2 7 7 C 1.38119 * 120.32927 * 359.97438 * 6 5 4 8 8 C 1.39717 * 120.20340 * 359.97438 * 7 6 5 9 9 C 1.47992 * 120.05967 * 179.97438 * 8 7 6 10 10 C 1.39886 * 119.44898 * 5.00672 * 9 8 7 11 11 C 1.36612 * 119.46412 * 180.02562 * 10 9 8 12 12 C 1.41303 * 118.41514 * 359.97438 * 11 10 9 13 13 C 1.41057 * 120.55341 * 179.72769 * 12 11 10 14 14 H 1.08002 * 120.00032 * 154.78096 * 13 12 11 15 15 C 1.40028 * 119.99803 * 334.77973 * 13 12 11 16 16 N 1.30785 * 120.00400 * 343.81085 * 15 13 12 17 17 Si 1.86806 * 119.99568 * 163.81068 * 15 13 12 18 18 H 1.48497 * 109.47008 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46892 * 120.00203 * 17 15 13 20 20 H 1.48504 * 109.47033 * 240.00074 * 17 15 13 21 21 C 1.40940 * 118.88808 * 359.97438 * 12 11 10 22 22 C 1.50700 * 119.79736 * 179.97438 * 21 12 11 23 23 N 1.31269 * 120.40495 * 0.02562 * 21 12 11 24 24 C 1.39307 * 119.87771 * 0.28186 * 8 7 6 25 25 H 1.08999 * 109.46859 * 270.00408 * 1 2 3 26 26 H 1.09008 * 109.46907 * 29.99743 * 1 2 3 27 27 H 1.08999 * 109.47033 * 149.99958 * 1 2 3 28 28 H 1.07999 * 119.93990 * 359.97438 * 5 4 2 29 29 H 1.07999 * 119.82988 * 179.97438 * 6 5 4 30 30 H 1.08002 * 119.89562 * 180.02562 * 7 6 5 31 31 H 1.07995 * 120.26938 * 359.97438 * 10 9 8 32 32 H 1.07997 * 120.78891 * 179.97438 * 11 10 9 33 33 H 0.97000 * 120.00076 * 179.97438 * 16 15 13 34 34 H 1.08999 * 109.47577 * 90.00102 * 22 21 12 35 35 H 1.09003 * 109.47076 * 210.00095 * 22 21 12 36 36 H 1.09003 * 109.47323 * 329.99558 * 22 21 12 37 37 H 1.07996 * 120.16594 * 179.72178 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 1.5452 -2.4882 -0.0006 6 6 2.2349 -3.6837 -0.0006 7 6 3.6161 -3.6920 -0.0011 8 6 4.3262 -2.4888 -0.0022 9 6 5.8061 -2.5014 -0.0022 10 6 6.4834 -3.7208 -0.1074 11 6 7.8495 -3.7329 -0.1069 12 6 8.5328 -2.5007 0.0004 13 6 9.9428 -2.4612 0.0112 14 1 10.4605 -1.5698 -0.3109 15 6 10.6711 -3.5778 0.4397 16 7 10.0772 -4.5250 1.1183 17 14 12.4913 -3.7143 0.0420 18 1 12.9202 -2.5202 -0.7295 19 1 13.2692 -3.7930 1.3045 20 1 12.7313 -4.9379 -0.7645 21 6 7.7819 -1.3123 0.1018 22 6 8.4896 0.0131 0.2178 23 7 6.4698 -1.3530 0.0968 24 6 3.6387 -1.2772 0.0032 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 0.4652 -2.4890 0.0003 29 1 1.6919 -4.6172 -0.0002 30 1 4.1487 -4.6316 -0.0015 31 1 5.9310 -4.6453 -0.1875 32 1 8.3941 -4.6621 -0.1866 33 1 10.5817 -5.2986 1.4147 34 1 8.6622 0.4213 -0.7781 35 1 7.8734 0.7049 0.7922 36 1 9.4450 -0.1281 0.7232 37 1 4.1829 -0.3444 0.0069 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239634168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:09 Heat of formation + Delta-G solvation = -0.825945 kcal Electronic energy + Delta-G solvation = -20398.813520 eV Core-core repulsion = 17298.012231 eV Total energy + Delta-G solvation = -3100.801289 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.73143 -38.73022 -37.53274 -34.39439 -32.64328 -31.24192 -31.15916 -30.00872 -29.03611 -27.03038 -25.16975 -23.54673 -22.46975 -20.98363 -20.38152 -19.01192 -17.51315 -16.98626 -15.77903 -15.44975 -15.26455 -14.85802 -14.64311 -14.56634 -13.77083 -13.53974 -13.35127 -13.28586 -12.74439 -12.45856 -12.38387 -12.03771 -11.89621 -11.74564 -11.66715 -11.38291 -11.21269 -11.13081 -10.97036 -10.75974 -10.61556 -9.87007 -9.62966 -9.54669 -8.77136 -8.62876 -8.33056 -8.12642 -7.33220 -7.03364 -4.60811 0.94359 1.57389 2.43503 2.73299 2.86725 2.91643 2.96851 3.14061 3.69328 4.12843 4.20922 4.55909 5.01988 5.06952 5.15024 5.32591 5.41157 5.45054 5.49905 5.66128 5.80666 5.91278 5.96577 6.19041 6.24260 6.31947 6.49689 6.60972 6.61434 6.67174 6.69866 6.77302 6.85768 6.97348 7.13621 7.22334 7.29328 7.60998 7.68862 7.73042 7.81593 8.24942 8.45122 8.55418 9.51793 9.82199 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031817 B = 0.003823 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.825818 B = 7322.236892 C = 8122.059056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.394 3.606 3 O -0.461 6.461 4 C -0.176 4.176 5 C -0.107 4.107 6 C -0.129 4.129 7 C -0.105 4.105 8 C 0.010 3.990 9 C -0.008 4.008 10 C -0.124 4.124 11 C -0.143 4.143 12 C 0.074 3.926 13 C -0.428 4.428 14 H 0.091 0.909 15 C 0.071 3.929 16 N -0.775 5.775 17 Si 0.915 3.085 18 H -0.256 1.256 19 H -0.271 1.271 20 H -0.269 1.269 21 C 0.011 3.989 22 C -0.073 4.073 23 N -0.444 5.444 24 C -0.052 4.052 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.287 0.713 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.204 -0.784 -1.453 10.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.273 3.727 3 O -0.337 6.337 4 C -0.177 4.177 5 C -0.126 4.126 6 C -0.147 4.147 7 C -0.124 4.124 8 C 0.009 3.991 9 C -0.142 4.142 10 C -0.144 4.144 11 C -0.167 4.167 12 C 0.069 3.931 13 C -0.456 4.456 14 H 0.109 0.891 15 C -0.150 4.150 16 N -0.398 5.398 17 Si 0.739 3.261 18 H -0.179 1.179 19 H -0.196 1.196 20 H -0.194 1.194 21 C -0.135 4.135 22 C -0.130 4.130 23 N -0.153 5.153 24 C -0.071 4.071 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.119 0.881 32 H 0.145 0.855 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.312 0.293 -1.255 10.392 hybrid contribution 1.224 -1.329 -0.105 1.810 sum -9.088 -1.036 -1.360 9.248 Atomic orbital electron populations 1.22221 0.94336 1.04532 1.04448 1.22528 0.91369 0.87951 0.70890 1.90537 1.72171 1.34424 1.36595 1.20385 0.94601 0.94343 1.08394 1.21238 0.99178 0.91629 1.00542 1.20887 0.94083 0.97600 1.02143 1.21461 0.93869 0.97930 0.99154 1.18690 0.92101 0.92211 0.96058 1.18661 0.90440 0.89252 1.15846 1.21265 0.95357 0.96562 1.01253 1.21303 0.92453 0.99059 1.03915 1.18440 0.94260 0.91605 0.88752 1.19768 0.91172 0.99578 1.35087 0.89136 1.26118 1.02009 0.94537 0.92321 1.69782 1.39147 1.07658 1.23221 0.86128 0.80747 0.79839 0.79435 1.17936 1.19600 1.19391 1.21015 0.88390 0.95059 1.09062 1.20275 0.99226 0.93074 1.00458 1.66732 1.10034 1.28858 1.09642 1.21593 0.92053 0.99159 0.94287 0.88754 0.89796 0.89613 0.85929 0.86062 0.85688 0.88060 0.85526 0.90202 0.93209 0.93028 0.91416 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.88 9.75 36.01 0.35 -1.53 16 2 C 0.39 5.85 7.23 -30.68 -0.22 5.62 16 3 O -0.46 -8.59 17.09 5.58 0.10 -8.49 16 4 C -0.18 -2.83 5.86 -105.11 -0.62 -3.45 16 5 C -0.11 -1.41 9.36 -39.01 -0.37 -1.77 16 6 C -0.13 -1.75 10.01 -39.71 -0.40 -2.15 16 7 C -0.10 -1.75 9.41 -39.07 -0.37 -2.11 16 8 C 0.01 0.21 5.87 -104.95 -0.62 -0.41 16 9 C -0.01 -0.20 6.73 -82.74 -0.56 -0.75 16 10 C -0.12 -2.84 9.37 -39.55 -0.37 -3.21 16 11 C -0.14 -3.53 8.72 -39.00 -0.34 -3.87 16 12 C 0.07 1.89 5.58 -106.64 -0.60 1.29 16 13 C -0.43 -10.37 8.14 -37.84 -0.31 -10.68 16 14 H 0.09 2.07 6.86 -52.49 -0.36 1.71 16 15 C 0.07 1.62 5.19 -17.33 -0.09 1.53 16 16 N -0.77 -18.36 10.94 55.55 0.61 -17.76 16 17 Si 0.92 16.98 29.59 -169.99 -5.03 11.95 16 18 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 19 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 20 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 21 C 0.01 0.27 6.86 -81.81 -0.56 -0.29 16 22 C -0.07 -1.52 9.58 36.01 0.34 -1.18 16 23 N -0.44 -11.04 9.31 -5.39 -0.05 -11.09 16 24 C -0.05 -1.02 9.12 -38.68 -0.35 -1.37 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.09 0.63 6.46 -51.93 -0.34 0.30 16 28 H 0.12 1.14 6.34 -52.49 -0.33 0.81 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.13 1.92 6.16 -52.49 -0.32 1.60 16 31 H 0.10 2.00 6.17 -52.49 -0.32 1.67 16 32 H 0.13 3.14 6.26 -52.49 -0.33 2.81 16 33 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.36 6.76 -51.93 -0.35 1.01 16 37 H 0.14 3.02 7.11 -52.49 -0.37 2.65 16 LS Contribution 316.07 15.07 4.76 4.76 Total: -1.00 -28.75 316.07 -8.65 -37.41 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -3.98 Total: 7.53 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -5.06 Total: -24.31 kcal Atomic # 7 Polarization: -29.40 SS G_CDS: 0.56 Total: -28.85 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.10 Total: -8.49 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.75 -8.65 -37.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239634168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.580 kcal (2) G-P(sol) polarization free energy of solvation -28.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds