Wall clock time and date at job start Tue Mar 31 2020 05:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21257 * 119.99995 * 2 1 4 4 C 1.47187 * 119.99932 * 180.02562 * 2 1 3 5 5 C 1.39985 * 120.10313 * 359.97438 * 4 2 1 6 6 C 1.38015 * 120.11897 * 180.02562 * 5 4 2 7 7 C 1.38119 * 120.32927 * 359.97438 * 6 5 4 8 8 C 1.39717 * 120.20340 * 359.97438 * 7 6 5 9 9 C 1.47992 * 120.05967 * 179.97438 * 8 7 6 10 10 C 1.39886 * 119.44898 * 5.00672 * 9 8 7 11 11 C 1.36612 * 119.46412 * 180.02562 * 10 9 8 12 12 C 1.41303 * 118.41514 * 359.97438 * 11 10 9 13 13 C 1.41057 * 120.55341 * 179.72769 * 12 11 10 14 14 H 1.08002 * 120.00032 * 154.78096 * 13 12 11 15 15 C 1.40028 * 119.99803 * 334.77973 * 13 12 11 16 16 N 1.30785 * 120.00400 * 343.81085 * 15 13 12 17 17 Si 1.86806 * 119.99568 * 163.81068 * 15 13 12 18 18 H 1.48497 * 109.47008 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46892 * 120.00203 * 17 15 13 20 20 H 1.48504 * 109.47033 * 240.00074 * 17 15 13 21 21 C 1.40940 * 118.88808 * 359.97438 * 12 11 10 22 22 C 1.50700 * 119.79736 * 179.97438 * 21 12 11 23 23 N 1.31269 * 120.40495 * 0.02562 * 21 12 11 24 24 C 1.39307 * 119.87771 * 0.28186 * 8 7 6 25 25 H 1.08999 * 109.46859 * 270.00408 * 1 2 3 26 26 H 1.09008 * 109.46907 * 29.99743 * 1 2 3 27 27 H 1.08999 * 109.47033 * 149.99958 * 1 2 3 28 28 H 1.07999 * 119.93990 * 359.97438 * 5 4 2 29 29 H 1.07999 * 119.82988 * 179.97438 * 6 5 4 30 30 H 1.08002 * 119.89562 * 180.02562 * 7 6 5 31 31 H 1.07995 * 120.26938 * 359.97438 * 10 9 8 32 32 H 1.07997 * 120.78891 * 179.97438 * 11 10 9 33 33 H 0.97000 * 120.00076 * 179.97438 * 16 15 13 34 34 H 1.08999 * 109.47577 * 90.00102 * 22 21 12 35 35 H 1.09003 * 109.47076 * 210.00095 * 22 21 12 36 36 H 1.09003 * 109.47323 * 329.99558 * 22 21 12 37 37 H 1.07996 * 120.16594 * 179.72178 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 1.5452 -2.4882 -0.0006 6 6 2.2349 -3.6837 -0.0006 7 6 3.6161 -3.6920 -0.0011 8 6 4.3262 -2.4888 -0.0022 9 6 5.8061 -2.5014 -0.0022 10 6 6.4834 -3.7208 -0.1074 11 6 7.8495 -3.7329 -0.1069 12 6 8.5328 -2.5007 0.0004 13 6 9.9428 -2.4612 0.0112 14 1 10.4605 -1.5698 -0.3109 15 6 10.6711 -3.5778 0.4397 16 7 10.0772 -4.5250 1.1183 17 14 12.4913 -3.7143 0.0420 18 1 12.9202 -2.5202 -0.7295 19 1 13.2692 -3.7930 1.3045 20 1 12.7313 -4.9379 -0.7645 21 6 7.7819 -1.3123 0.1018 22 6 8.4896 0.0131 0.2178 23 7 6.4698 -1.3530 0.0968 24 6 3.6387 -1.2772 0.0032 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 0.4652 -2.4890 0.0003 29 1 1.6919 -4.6172 -0.0002 30 1 4.1487 -4.6316 -0.0015 31 1 5.9310 -4.6453 -0.1875 32 1 8.3941 -4.6621 -0.1866 33 1 10.5817 -5.2986 1.4147 34 1 8.6622 0.4213 -0.7781 35 1 7.8734 0.7049 0.7922 36 1 9.4450 -0.1281 0.7232 37 1 4.1829 -0.3444 0.0069 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239634168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:08 Heat of formation + Delta-G solvation = -16.225217 kcal Electronic energy + Delta-G solvation = -20399.481282 eV Core-core repulsion = 17298.012231 eV Total energy + Delta-G solvation = -3101.469052 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.06916 -40.34911 -38.90569 -36.12272 -34.21463 -32.89784 -32.51154 -31.44378 -30.16792 -28.79212 -26.82604 -24.81656 -24.06829 -22.43368 -22.08649 -20.34774 -19.28988 -18.28095 -17.41356 -16.82162 -16.61537 -16.14033 -16.07014 -15.97987 -15.35815 -15.05905 -14.84313 -14.63994 -14.30346 -13.75220 -13.64774 -13.55733 -13.39059 -13.05411 -13.00643 -12.84761 -12.75390 -12.70253 -12.50697 -12.24375 -11.97533 -11.59156 -11.29489 -10.75389 -10.34465 -10.11273 -9.95504 -9.89546 -9.03348 -8.74806 -6.43788 -0.30073 0.13416 0.89731 1.08401 1.37938 1.42196 1.53869 1.63324 2.14470 2.60038 3.01568 3.14599 3.64639 3.69204 3.96064 4.10627 4.17239 4.33677 4.35246 4.47775 4.53307 4.61721 4.70191 4.73061 4.87802 4.91399 4.96879 5.02783 5.05217 5.12770 5.18612 5.22524 5.41047 5.45452 5.47859 5.66236 5.77195 5.92284 6.00873 6.06790 6.42844 6.58520 6.65758 6.73319 7.68805 8.14533 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031817 B = 0.003823 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.825818 B = 7322.236892 C = 8122.059056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.391 3.609 3 O -0.515 6.515 4 C -0.190 4.190 5 C -0.074 4.074 6 C -0.119 4.119 7 C -0.102 4.102 8 C -0.030 4.030 9 C -0.015 4.015 10 C -0.130 4.130 11 C -0.161 4.161 12 C 0.045 3.955 13 C -0.457 4.457 14 H 0.094 0.906 15 C 0.034 3.966 16 N -0.808 5.808 17 Si 0.990 3.010 18 H -0.254 1.254 19 H -0.264 1.264 20 H -0.262 1.262 21 C -0.019 4.019 22 C -0.065 4.065 23 N -0.469 5.469 24 C -0.079 4.079 25 H 0.119 0.881 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.180 0.820 29 H 0.171 0.829 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.296 0.704 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.262 -2.472 -1.651 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.273 3.727 3 O -0.394 6.394 4 C -0.191 4.191 5 C -0.092 4.092 6 C -0.136 4.136 7 C -0.121 4.121 8 C -0.031 4.031 9 C -0.150 4.150 10 C -0.150 4.150 11 C -0.186 4.186 12 C 0.040 3.960 13 C -0.485 4.485 14 H 0.112 0.888 15 C -0.184 4.184 16 N -0.431 5.431 17 Si 0.809 3.191 18 H -0.177 1.177 19 H -0.189 1.189 20 H -0.187 1.187 21 C -0.164 4.164 22 C -0.122 4.122 23 N -0.178 5.178 24 C -0.098 4.098 25 H 0.137 0.863 26 H 0.109 0.891 27 H 0.137 0.863 28 H 0.197 0.803 29 H 0.188 0.812 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.387 -1.394 -1.451 13.538 hybrid contribution 1.849 -0.839 -0.028 2.031 sum -11.538 -2.233 -1.479 11.845 Atomic orbital electron populations 1.22254 0.89056 1.06553 1.06480 1.23363 0.94024 0.86515 0.68814 1.90531 1.73778 1.35946 1.39176 1.20743 0.93203 0.96826 1.08286 1.21868 1.01774 0.89722 0.95799 1.21448 0.92635 0.99900 0.99626 1.21717 0.95655 0.96718 0.98025 1.18721 0.90487 0.94052 0.99808 1.19364 0.92611 0.89002 1.13999 1.21542 0.94948 0.97754 1.00770 1.21383 0.93391 0.98763 1.05102 1.18772 0.95285 0.92107 0.89844 1.19977 0.91072 1.00802 1.36617 0.88801 1.26965 1.06387 0.93602 0.91404 1.69816 1.41143 1.08360 1.23828 0.85030 0.74865 0.79874 0.79301 1.17674 1.18888 1.18674 1.21560 0.88786 0.96398 1.09627 1.20243 0.99034 0.91715 1.01214 1.66839 1.10275 1.29990 1.10691 1.21413 0.94120 0.97521 0.96773 0.86318 0.89103 0.86318 0.80323 0.81165 0.84670 0.85102 0.86194 0.89316 0.92048 0.92743 0.90994 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 9.75 71.24 0.69 -1.96 16 2 C 0.39 10.97 7.23 28.04 0.20 11.18 16 3 O -0.51 -19.71 17.09 -2.96 -0.05 -19.76 16 4 C -0.19 -5.75 5.86 -20.18 -0.12 -5.87 16 5 C -0.07 -1.53 9.36 22.64 0.21 -1.32 16 6 C -0.12 -2.59 10.01 22.19 0.22 -2.37 16 7 C -0.10 -3.17 9.41 22.60 0.21 -2.96 16 8 C -0.03 -1.23 5.87 -20.08 -0.12 -1.35 16 9 C -0.02 -0.74 6.73 41.95 0.28 -0.46 16 10 C -0.13 -6.19 9.37 22.29 0.21 -5.98 16 11 C -0.16 -8.41 8.72 22.64 0.20 -8.21 16 12 C 0.04 2.40 5.58 -21.17 -0.12 2.28 16 13 C -0.46 -23.16 8.14 23.40 0.19 -22.97 16 14 H 0.09 4.50 6.86 -2.91 -0.02 4.48 16 15 C 0.03 1.60 5.19 85.28 0.44 2.05 16 16 N -0.81 -39.44 10.94 21.84 0.24 -39.20 16 17 Si 0.99 35.17 29.59 68.60 2.03 37.20 16 18 H -0.25 -8.80 7.11 99.48 0.71 -8.10 16 19 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 20 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 21 C -0.02 -1.00 6.86 43.30 0.30 -0.71 16 22 C -0.06 -2.87 9.58 71.24 0.68 -2.19 16 23 N -0.47 -24.94 9.31 -170.96 -1.59 -26.53 16 24 C -0.08 -3.21 9.12 22.85 0.21 -3.00 16 25 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.09 1.24 8.14 -2.38 -0.02 1.23 16 27 H 0.12 0.91 6.46 -2.39 -0.02 0.89 16 28 H 0.18 1.78 6.34 -2.91 -0.02 1.76 16 29 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 30 H 0.14 3.83 6.16 -2.91 -0.02 3.82 16 31 H 0.13 5.19 6.17 -2.91 -0.02 5.17 16 32 H 0.12 6.27 6.26 -2.91 -0.02 6.25 16 33 H 0.30 12.83 8.30 -92.71 -0.77 12.06 16 34 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.07 3.06 6.76 -2.39 -0.02 3.04 16 37 H 0.10 4.73 7.11 -2.91 -0.02 4.71 16 Total: -1.00 -70.67 316.07 5.43 -65.24 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 1.11 Total: 26.86 kcal Atomic # 6 Polarization: -47.52 SS G_CDS: 3.70 Total: -43.82 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -1.35 Total: -65.73 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.05 Total: -19.76 kcal Atomic # 14 Polarization: 35.17 SS G_CDS: 2.03 Total: 37.20 kcal Total: -70.67 5.43 -65.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239634168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.010 kcal (2) G-P(sol) polarization free energy of solvation -70.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds