Wall clock time and date at job start Tue Mar 31 2020 05:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21247 * 120.00565 * 2 1 4 4 C 1.47198 * 119.99511 * 179.97438 * 2 1 3 5 5 C 1.40003 * 120.09488 * 174.33622 * 4 2 1 6 6 C 1.38023 * 120.12793 * 180.02562 * 5 4 2 7 7 C 1.38105 * 120.33819 * 359.76544 * 6 5 4 8 8 C 1.39777 * 120.19253 * 0.51215 * 7 6 5 9 9 C 1.47849 * 120.06600 * 179.73904 * 8 7 6 10 10 N 1.32569 * 119.99273 * 137.07312 * 9 8 7 11 11 C 1.31738 * 121.72515 * 179.97438 * 10 9 8 12 12 C 1.50700 * 119.24914 * 180.02562 * 11 10 9 13 13 C 1.38868 * 121.50582 * 0.28419 * 11 10 9 14 14 C 1.36892 * 119.78963 * 359.43929 * 13 11 10 15 15 C 1.41110 * 118.39787 * 0.54296 * 14 13 11 16 16 C 1.40898 * 120.72113 * 179.70601 * 15 14 13 17 17 H 1.08003 * 119.99947 * 148.79242 * 16 15 14 18 18 C 1.40074 * 119.99670 * 328.79103 * 16 15 14 19 19 N 1.30766 * 119.99915 * 349.17426 * 18 16 15 20 20 Si 1.86800 * 119.99721 * 169.17235 * 18 16 15 21 21 H 1.48492 * 109.47133 * 90.00116 * 20 18 16 22 22 H 1.48506 * 109.46812 * 210.00217 * 20 18 16 23 23 H 1.48502 * 109.47173 * 329.99719 * 20 18 16 24 24 C 1.39379 * 119.86826 * 359.46781 * 8 7 6 25 25 H 1.09002 * 109.47200 * 185.10355 * 1 2 3 26 26 H 1.09006 * 109.46837 * 305.10093 * 1 2 3 27 27 H 1.09002 * 109.47229 * 65.09648 * 1 2 3 28 28 H 1.07994 * 119.93321 * 0.02808 * 5 4 2 29 29 H 1.08003 * 119.82589 * 180.02562 * 6 5 4 30 30 H 1.07996 * 119.89954 * 180.27897 * 7 6 5 31 31 H 1.09004 * 109.47447 * 90.00255 * 12 11 10 32 32 H 1.09000 * 109.47142 * 330.00555 * 12 11 10 33 33 H 1.09002 * 109.47518 * 210.00367 * 12 11 10 34 34 H 1.07994 * 120.10263 * 179.70830 * 13 11 10 35 35 H 1.08008 * 120.79625 * 180.27387 * 14 13 11 36 36 H 0.97009 * 119.99811 * 180.02562 * 19 18 16 37 37 H 1.07991 * 120.16819 * 180.29345 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2748 0.0006 5 6 3.6378 -1.2803 -0.1190 6 6 4.3284 -2.4753 -0.1190 7 6 3.6510 -3.6725 0.0034 8 6 2.2579 -3.6835 0.1178 9 6 1.5350 -4.9671 0.2429 10 7 0.5444 -5.0874 1.1156 11 6 -0.1228 -6.2147 1.2551 12 6 -1.2396 -6.2894 2.2642 13 6 0.1828 -7.3375 0.4971 14 6 1.1910 -7.2802 -0.4272 15 6 1.9014 -6.0696 -0.5712 16 6 2.9523 -5.9582 -1.5032 17 1 3.1536 -5.0099 -1.9792 18 6 3.7357 -7.0774 -1.8123 19 7 3.6368 -8.1640 -1.0915 20 14 4.9218 -7.0177 -3.2542 21 1 6.2445 -6.5305 -2.7873 22 1 5.0704 -8.3788 -3.8295 23 1 4.3932 -6.0967 -4.2923 24 6 1.5521 -2.4816 0.1193 25 1 -0.3634 -1.0236 0.0914 26 1 -0.3633 0.5910 0.8408 27 1 -0.3634 0.4327 -0.9321 28 1 4.1744 -0.3476 -0.2113 29 1 5.4045 -2.4738 -0.2111 30 1 4.1989 -4.6032 0.0070 31 1 -2.1776 -6.0003 1.7902 32 1 -1.0272 -5.6127 3.0919 33 1 -1.3218 -7.3091 2.6405 34 1 -0.3760 -8.2515 0.6333 35 1 1.4394 -8.1423 -1.0285 36 1 4.1797 -8.9390 -1.3054 37 1 0.4762 -2.4842 0.2121 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239634247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:12 Heat of formation + Delta-G solvation = -0.170400 kcal Electronic energy + Delta-G solvation = -20942.534435 eV Core-core repulsion = 17841.761573 eV Total energy + Delta-G solvation = -3100.772863 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.65275 -38.76244 -37.36995 -34.43155 -32.35695 -31.71443 -30.97422 -29.38587 -28.92119 -27.80768 -24.59098 -23.28193 -22.69246 -20.81281 -20.60861 -19.01646 -17.54296 -16.73113 -15.71904 -15.33354 -15.13021 -14.75116 -14.59092 -14.35502 -14.00590 -13.64560 -13.50205 -13.16184 -12.66085 -12.37447 -12.06463 -11.98801 -11.89267 -11.67820 -11.59323 -11.51839 -11.22856 -11.07600 -11.05409 -10.77635 -10.58376 -9.93585 -9.52508 -9.45108 -8.73312 -8.45743 -8.21132 -8.11878 -7.39814 -6.98113 -4.62569 1.12215 1.74647 2.48978 2.70079 2.93720 2.95054 2.98691 3.05258 3.73805 4.32718 4.34326 4.45579 5.18434 5.22905 5.26232 5.44182 5.51659 5.54761 5.70833 5.86665 5.90103 5.95861 6.02668 6.14254 6.21963 6.30452 6.40723 6.43309 6.55496 6.66628 6.73826 6.84217 6.93160 6.95982 7.11656 7.25061 7.42136 7.55539 7.72201 7.76964 7.79370 8.25066 8.48749 8.54202 9.43529 9.91643 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012931 B = 0.006764 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.776659 B = 4138.329596 C = 5936.966789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.402 3.598 3 O -0.477 6.477 4 C -0.188 4.188 5 C -0.079 4.079 6 C -0.144 4.144 7 C -0.058 4.058 8 C 0.010 3.990 9 C 0.016 3.984 10 N -0.451 5.451 11 C -0.002 4.002 12 C -0.075 4.075 13 C -0.143 4.143 14 C -0.121 4.121 15 C 0.086 3.914 16 C -0.445 4.445 17 H 0.088 0.912 18 C 0.074 3.926 19 N -0.790 5.790 20 Si 0.909 3.091 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.062 4.062 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.140 0.860 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.285 0.715 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 4.229 0.144 4.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.283 3.717 3 O -0.355 6.355 4 C -0.189 4.189 5 C -0.097 4.097 6 C -0.162 4.162 7 C -0.077 4.077 8 C 0.009 3.991 9 C -0.122 4.122 10 N -0.159 5.159 11 C -0.144 4.144 12 C -0.133 4.133 13 C -0.163 4.163 14 C -0.147 4.147 15 C 0.082 3.918 16 C -0.474 4.474 17 H 0.106 0.894 18 C -0.145 4.145 19 N -0.415 5.415 20 Si 0.733 3.267 21 H -0.191 1.191 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.081 4.081 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.158 0.842 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.143 0.857 36 H 0.096 0.904 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.155 5.220 0.680 5.688 hybrid contribution 0.790 -1.168 -1.171 1.832 sum -1.365 4.052 -0.490 4.304 Atomic orbital electron populations 1.22251 0.94331 1.05189 1.04311 1.22506 0.91486 0.87765 0.69973 1.90471 1.72270 1.34609 1.38104 1.20268 0.94633 0.94230 1.09769 1.21242 0.92958 0.98154 0.97359 1.21001 0.99758 0.92181 1.03243 1.21811 0.93962 0.98489 0.93409 1.18394 0.92296 0.91361 0.97049 1.19424 0.99563 0.94050 0.99154 1.66824 1.05469 1.25804 1.17794 1.20280 1.01225 0.90290 1.02638 1.20301 0.95426 1.00669 0.96885 1.21279 0.99004 0.97756 0.98312 1.21391 0.94544 0.99322 0.99400 1.18321 0.91704 0.90924 0.90882 1.19569 1.11411 0.96775 1.19672 0.89396 1.25970 0.97712 0.94381 0.96420 1.69728 1.34280 1.03423 1.34035 0.86260 0.80310 0.78877 0.81257 1.19053 1.19908 1.18178 1.21620 0.99792 0.90590 0.96116 0.89371 0.89253 0.89036 0.86021 0.86049 0.84179 0.93057 0.92505 0.92825 0.88201 0.85681 0.90353 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.44 10.19 36.00 0.37 -2.07 16 2 C 0.40 6.33 7.22 -30.67 -0.22 6.11 16 3 O -0.48 -8.58 17.10 5.59 0.10 -8.49 16 4 C -0.19 -3.23 5.86 -105.11 -0.62 -3.85 16 5 C -0.08 -1.32 9.59 -39.00 -0.37 -1.70 16 6 C -0.14 -2.42 10.01 -39.71 -0.40 -2.82 16 7 C -0.06 -1.13 7.88 -39.05 -0.31 -1.44 16 8 C 0.01 0.21 5.28 -104.96 -0.55 -0.35 16 9 C 0.02 0.37 6.44 -82.23 -0.53 -0.16 16 10 N -0.45 -10.35 10.04 -5.44 -0.05 -10.40 16 11 C 0.00 -0.05 6.79 -82.40 -0.56 -0.61 16 12 C -0.08 -1.27 10.15 36.01 0.37 -0.90 16 13 C -0.14 -3.11 9.64 -39.84 -0.38 -3.49 16 14 C -0.12 -2.88 8.70 -38.98 -0.34 -3.21 16 15 C 0.09 2.10 5.51 -106.41 -0.59 1.51 16 16 C -0.44 -10.49 6.56 -37.89 -0.25 -10.74 16 17 H 0.09 2.03 6.61 -52.48 -0.35 1.68 16 18 C 0.07 1.67 5.26 -17.32 -0.09 1.58 16 19 N -0.79 -18.47 11.06 55.55 0.61 -17.86 16 20 Si 0.91 17.11 29.57 -169.99 -5.03 12.08 16 21 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 22 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 23 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 24 C -0.06 -1.15 9.04 -38.67 -0.35 -1.50 16 25 H 0.09 1.03 5.62 -51.93 -0.29 0.74 16 26 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.12 1.89 7.65 -52.49 -0.40 1.49 16 29 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 30 H 0.14 2.88 6.66 -52.49 -0.35 2.53 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.13 3.02 6.52 -52.48 -0.34 2.68 16 36 H 0.29 6.09 8.30 -40.82 -0.34 5.75 16 37 H 0.13 2.23 5.94 -52.49 -0.31 1.92 16 LS Contribution 317.26 15.07 4.78 4.78 Total: -1.00 -26.81 317.26 -8.55 -35.36 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.13 Total: 8.15 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -4.83 Total: -23.63 kcal Atomic # 7 Polarization: -28.82 SS G_CDS: 0.56 Total: -28.26 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.10 Total: -8.49 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.08 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.81 -8.55 -35.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239634247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.192 kcal (2) G-P(sol) polarization free energy of solvation -26.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds