Wall clock time and date at job start Tue Mar 31 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21247 * 120.00565 * 2 1 4 4 C 1.47198 * 119.99511 * 179.97438 * 2 1 3 5 5 C 1.40003 * 120.09488 * 174.33622 * 4 2 1 6 6 C 1.38023 * 120.12793 * 180.02562 * 5 4 2 7 7 C 1.38105 * 120.33819 * 359.76544 * 6 5 4 8 8 C 1.39777 * 120.19253 * 0.51215 * 7 6 5 9 9 C 1.47849 * 120.06600 * 179.73904 * 8 7 6 10 10 N 1.32569 * 119.99273 * 137.07312 * 9 8 7 11 11 C 1.31738 * 121.72515 * 179.97438 * 10 9 8 12 12 C 1.50700 * 119.24914 * 180.02562 * 11 10 9 13 13 C 1.38868 * 121.50582 * 0.28419 * 11 10 9 14 14 C 1.36892 * 119.78963 * 359.43929 * 13 11 10 15 15 C 1.41110 * 118.39787 * 0.54296 * 14 13 11 16 16 C 1.40898 * 120.72113 * 179.70601 * 15 14 13 17 17 H 1.08003 * 119.99947 * 148.79242 * 16 15 14 18 18 C 1.40074 * 119.99670 * 328.79103 * 16 15 14 19 19 N 1.30766 * 119.99915 * 349.17426 * 18 16 15 20 20 Si 1.86800 * 119.99721 * 169.17235 * 18 16 15 21 21 H 1.48492 * 109.47133 * 90.00116 * 20 18 16 22 22 H 1.48506 * 109.46812 * 210.00217 * 20 18 16 23 23 H 1.48502 * 109.47173 * 329.99719 * 20 18 16 24 24 C 1.39379 * 119.86826 * 359.46781 * 8 7 6 25 25 H 1.09002 * 109.47200 * 185.10355 * 1 2 3 26 26 H 1.09006 * 109.46837 * 305.10093 * 1 2 3 27 27 H 1.09002 * 109.47229 * 65.09648 * 1 2 3 28 28 H 1.07994 * 119.93321 * 0.02808 * 5 4 2 29 29 H 1.08003 * 119.82589 * 180.02562 * 6 5 4 30 30 H 1.07996 * 119.89954 * 180.27897 * 7 6 5 31 31 H 1.09004 * 109.47447 * 90.00255 * 12 11 10 32 32 H 1.09000 * 109.47142 * 330.00555 * 12 11 10 33 33 H 1.09002 * 109.47518 * 210.00367 * 12 11 10 34 34 H 1.07994 * 120.10263 * 179.70830 * 13 11 10 35 35 H 1.08008 * 120.79625 * 180.27387 * 14 13 11 36 36 H 0.97009 * 119.99811 * 180.02562 * 19 18 16 37 37 H 1.07991 * 120.16819 * 180.29345 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2748 0.0006 5 6 3.6378 -1.2803 -0.1190 6 6 4.3284 -2.4753 -0.1190 7 6 3.6510 -3.6725 0.0034 8 6 2.2579 -3.6835 0.1178 9 6 1.5350 -4.9671 0.2429 10 7 0.5444 -5.0874 1.1156 11 6 -0.1228 -6.2147 1.2551 12 6 -1.2396 -6.2894 2.2642 13 6 0.1828 -7.3375 0.4971 14 6 1.1910 -7.2802 -0.4272 15 6 1.9014 -6.0696 -0.5712 16 6 2.9523 -5.9582 -1.5032 17 1 3.1536 -5.0099 -1.9792 18 6 3.7357 -7.0774 -1.8123 19 7 3.6368 -8.1640 -1.0915 20 14 4.9218 -7.0177 -3.2542 21 1 6.2445 -6.5305 -2.7873 22 1 5.0704 -8.3788 -3.8295 23 1 4.3932 -6.0967 -4.2923 24 6 1.5521 -2.4816 0.1193 25 1 -0.3634 -1.0236 0.0914 26 1 -0.3633 0.5910 0.8408 27 1 -0.3634 0.4327 -0.9321 28 1 4.1744 -0.3476 -0.2113 29 1 5.4045 -2.4738 -0.2111 30 1 4.1989 -4.6032 0.0070 31 1 -2.1776 -6.0003 1.7902 32 1 -1.0272 -5.6127 3.0919 33 1 -1.3218 -7.3091 2.6405 34 1 -0.3760 -8.2515 0.6333 35 1 1.4394 -8.1423 -1.0285 36 1 4.1797 -8.9390 -1.3054 37 1 0.4762 -2.4842 0.2121 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239634247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:11 Heat of formation + Delta-G solvation = -12.496354 kcal Electronic energy + Delta-G solvation = -20943.068929 eV Core-core repulsion = 17841.761573 eV Total energy + Delta-G solvation = -3101.307356 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.07549 -40.32551 -38.81789 -36.12921 -33.92686 -33.04744 -32.66297 -30.86940 -30.12535 -29.41551 -26.21249 -24.65298 -24.29627 -22.47523 -22.10667 -20.39462 -19.27133 -18.12456 -17.38369 -16.80053 -16.54375 -16.12032 -15.94730 -15.89409 -15.56102 -15.09656 -14.88319 -14.60632 -14.24167 -13.85017 -13.56405 -13.31151 -13.19082 -13.06858 -12.96990 -12.91163 -12.72819 -12.64249 -12.52593 -12.28698 -12.05110 -11.58991 -11.17338 -10.75754 -10.37826 -9.95369 -9.88828 -9.74959 -9.07046 -8.66656 -6.39223 -0.25759 0.23514 0.86031 1.10135 1.38728 1.47114 1.51662 1.52941 2.16726 2.70779 2.92563 3.14794 3.60099 3.73821 3.97801 4.11664 4.19843 4.37115 4.45178 4.53133 4.55564 4.62668 4.63908 4.68415 4.83842 4.96222 5.01510 5.06363 5.12516 5.15038 5.21727 5.24533 5.33651 5.43978 5.56194 5.71069 5.81130 5.95829 6.04779 6.08492 6.49569 6.52367 6.74578 6.79661 7.69897 8.25331 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012931 B = 0.006764 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.776659 B = 4138.329596 C = 5936.966789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.405 3.595 3 O -0.500 6.500 4 C -0.191 4.191 5 C -0.077 4.077 6 C -0.135 4.135 7 C -0.070 4.070 8 C -0.019 4.019 9 C 0.006 3.994 10 N -0.465 5.465 11 C -0.010 4.010 12 C -0.070 4.070 13 C -0.149 4.149 14 C -0.143 4.143 15 C 0.056 3.944 16 C -0.462 4.462 17 H 0.084 0.916 18 C 0.041 3.959 19 N -0.822 5.822 20 Si 0.973 3.027 21 H -0.259 1.259 22 H -0.268 1.268 23 H -0.260 1.260 24 C -0.059 4.059 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.139 0.861 29 H 0.151 0.849 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.291 0.709 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.768 5.412 0.165 6.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.287 3.713 3 O -0.379 6.379 4 C -0.192 4.192 5 C -0.096 4.096 6 C -0.153 4.153 7 C -0.089 4.089 8 C -0.020 4.020 9 C -0.131 4.131 10 N -0.174 5.174 11 C -0.152 4.152 12 C -0.128 4.128 13 C -0.169 4.169 14 C -0.169 4.169 15 C 0.052 3.948 16 C -0.492 4.492 17 H 0.102 0.898 18 C -0.175 4.175 19 N -0.447 5.447 20 Si 0.794 3.206 21 H -0.183 1.183 22 H -0.192 1.192 23 H -0.184 1.184 24 C -0.078 4.078 25 H 0.108 0.892 26 H 0.126 0.874 27 H 0.130 0.870 28 H 0.157 0.843 29 H 0.169 0.831 30 H 0.140 0.860 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.145 0.855 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.603 6.398 0.715 6.944 hybrid contribution 0.865 -1.478 -1.094 2.032 sum -1.737 4.920 -0.379 5.231 Atomic orbital electron populations 1.22266 0.91138 1.05921 1.06124 1.22854 0.93110 0.86512 0.68813 1.90470 1.73110 1.35011 1.39351 1.20558 0.95106 0.94668 1.08904 1.21536 0.93111 0.98722 0.96201 1.21243 1.01174 0.91095 1.01746 1.21726 0.93663 0.98864 0.94660 1.18494 0.92962 0.91302 0.99252 1.19838 0.99656 0.94931 0.98704 1.66957 1.05910 1.26571 1.17957 1.21096 1.01640 0.89647 1.02826 1.20364 0.94305 1.02292 0.95806 1.21588 0.98540 0.99107 0.97617 1.21431 0.95800 0.99078 1.00560 1.18656 0.92597 0.91718 0.91877 1.19625 1.12028 0.97163 1.20353 0.89839 1.26669 0.98858 0.93709 0.98307 1.69777 1.35439 1.04124 1.35378 0.85311 0.78346 0.78930 0.78039 1.18336 1.19212 1.18374 1.21649 1.00217 0.90168 0.95752 0.89187 0.87353 0.87048 0.84323 0.83146 0.86019 0.91138 0.92174 0.90630 0.85514 0.86920 0.89795 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.19 10.19 71.24 0.73 -3.46 16 2 C 0.41 11.92 7.22 28.04 0.20 12.12 16 3 O -0.50 -17.00 17.10 -2.93 -0.05 -17.05 16 4 C -0.19 -6.31 5.86 -20.18 -0.12 -6.43 16 5 C -0.08 -2.47 9.59 22.65 0.22 -2.26 16 6 C -0.13 -4.40 10.01 22.19 0.22 -4.17 16 7 C -0.07 -2.78 7.88 22.61 0.18 -2.60 16 8 C -0.02 -0.82 5.28 -20.09 -0.11 -0.92 16 9 C 0.01 0.29 6.44 42.48 0.27 0.57 16 10 N -0.47 -21.45 10.04 -171.13 -1.72 -23.17 16 11 C -0.01 -0.44 6.79 42.72 0.29 -0.15 16 12 C -0.07 -2.21 10.15 71.24 0.72 -1.49 16 13 C -0.15 -6.46 9.64 22.10 0.21 -6.24 16 14 C -0.14 -7.02 8.70 22.66 0.20 -6.82 16 15 C 0.06 2.83 5.51 -21.03 -0.12 2.71 16 16 C -0.46 -22.61 6.56 23.37 0.15 -22.46 16 17 H 0.08 4.01 6.61 -2.91 -0.02 3.99 16 18 C 0.04 1.87 5.26 85.30 0.45 2.32 16 19 N -0.82 -39.58 11.06 21.85 0.24 -39.34 16 20 Si 0.97 35.41 29.57 68.60 2.03 37.44 16 21 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 22 H -0.27 -9.36 7.11 99.48 0.71 -8.66 16 23 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 24 C -0.06 -2.15 9.04 22.86 0.21 -1.94 16 25 H 0.09 1.89 5.62 -2.39 -0.01 1.87 16 26 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.14 3.98 7.65 -2.91 -0.02 3.96 16 29 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 30 H 0.12 5.22 6.66 -2.91 -0.02 5.20 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 34 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 35 H 0.11 5.70 6.52 -2.91 -0.02 5.68 16 36 H 0.29 12.73 8.30 -92.70 -0.77 11.96 16 37 H 0.14 4.66 5.94 -2.92 -0.02 4.64 16 Total: -1.00 -58.89 317.26 5.31 -53.58 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 1.10 Total: 29.78 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 3.71 Total: -41.24 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -1.48 Total: -62.51 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.05 Total: -17.05 kcal Atomic # 14 Polarization: 35.41 SS G_CDS: 2.03 Total: 37.44 kcal Total: -58.89 5.31 -53.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239634247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.082 kcal (2) G-P(sol) polarization free energy of solvation -58.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds