Wall clock time and date at job start Tue Mar 31 2020 05:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36236 * 119.94037 * 2 1 4 4 C 1.40938 * 119.88379 * 180.27472 * 3 2 1 5 5 C 1.40978 * 120.11049 * 179.76223 * 4 3 2 6 6 H 1.07993 * 120.00485 * 204.68603 * 5 4 3 7 7 C 1.40092 * 119.99608 * 24.68871 * 5 4 3 8 8 N 1.30750 * 120.00124 * 17.94777 * 7 5 4 9 9 Si 1.86804 * 119.99772 * 197.94827 * 7 5 4 10 10 H 1.48494 * 109.47342 * 89.99945 * 9 7 5 11 11 H 1.48503 * 109.47072 * 210.00297 * 9 7 5 12 12 H 1.48497 * 109.47027 * 329.99712 * 9 7 5 13 13 C 1.40970 * 119.78408 * 359.74542 * 4 3 2 14 14 C 1.36202 * 119.88177 * 359.97438 * 13 4 3 15 15 C 1.40009 * 119.94563 * 179.76898 * 2 1 3 16 16 C 1.47776 * 119.88779 * 359.97438 * 15 2 1 17 17 C 1.39474 * 120.22502 * 244.72577 * 16 15 2 18 18 C 1.37952 * 119.99724 * 180.02562 * 17 16 15 19 19 C 1.38575 * 120.45437 * 359.97438 * 18 17 16 20 20 C 1.38006 * 120.45149 * 359.97438 * 19 18 17 21 21 C 1.39447 * 119.98921 * 0.30448 * 20 19 18 22 22 C 1.47606 * 120.22095 * 179.69895 * 21 20 19 23 23 N 1.34779 * 119.99915 * 0.02562 * 22 21 20 24 24 O 1.21577 * 120.00031 * 179.97438 * 22 21 20 25 25 H 1.09001 * 109.47167 * 270.22972 * 1 2 3 26 26 H 1.08996 * 109.47253 * 30.23797 * 1 2 3 27 27 H 1.09002 * 109.46820 * 150.23593 * 1 2 3 28 28 H 1.08002 * 120.05738 * 0.04181 * 3 2 1 29 29 H 0.96996 * 119.99822 * 180.02562 * 8 7 5 30 30 H 1.08000 * 120.06504 * 179.97438 * 13 4 3 31 31 H 1.08001 * 119.94455 * 179.97438 * 14 13 4 32 32 H 1.08000 * 119.99991 * 359.97438 * 17 16 15 33 33 H 1.07994 * 119.77624 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.77833 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.99882 * 180.02562 * 20 19 18 36 36 H 0.97001 * 120.00291 * 359.97438 * 23 22 21 37 37 H 0.96995 * 119.99894 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1805 0.0000 4 6 3.5964 1.1792 -0.0059 5 6 4.3048 2.3980 -0.0109 6 1 5.3092 2.4372 -0.4058 7 6 3.7058 3.5584 0.4963 8 7 2.6626 3.4669 1.2793 9 14 4.3974 5.2363 0.0539 10 1 3.7379 5.7340 -1.1799 11 1 4.1443 6.1853 1.1678 12 1 5.8599 5.1235 -0.1775 13 6 4.2954 -0.0450 -0.0063 14 6 3.6064 -1.2199 -0.0005 15 6 2.2059 -1.2132 0.0049 16 6 1.4633 -2.4908 0.0106 17 6 1.5558 -3.3517 1.1040 18 6 0.8610 -4.5435 1.1042 19 6 0.0680 -4.8943 0.0232 20 6 -0.0378 -4.0560 -1.0679 21 6 0.6611 -2.8495 -1.0903 22 6 0.5569 -1.9521 -2.2576 23 7 -0.2161 -2.2975 -3.3063 24 8 1.1675 -0.9009 -2.2726 25 1 -0.3633 0.0041 1.0277 26 1 -0.3633 0.8878 -0.5175 27 1 -0.3633 -0.8921 -0.5102 28 1 1.6469 2.1158 0.0007 29 1 2.2477 4.2704 1.6301 30 1 5.3754 -0.0514 -0.0112 31 1 4.1409 -2.1583 -0.0012 32 1 2.1720 -3.0857 1.9502 33 1 0.9355 -5.2076 1.9525 34 1 -0.4716 -5.8298 0.0351 35 1 -0.6582 -4.3365 -1.9063 36 1 -0.7036 -3.1360 -3.2941 37 1 -0.2848 -1.7076 -4.0732 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239761882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:53 Heat of formation + Delta-G solvation = 7.389207 kcal Electronic energy + Delta-G solvation = -21494.228773 eV Core-core repulsion = 18393.783720 eV Total energy + Delta-G solvation = -3100.445053 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.97463 -37.72032 -37.25995 -34.03178 -33.28967 -31.68501 -31.03806 -30.49509 -28.63625 -25.72703 -25.23743 -23.47289 -22.20303 -20.41731 -20.26818 -19.29545 -17.67458 -16.98373 -16.41289 -15.79125 -15.16300 -14.79309 -14.57847 -14.20364 -13.97186 -13.54327 -13.43509 -13.10844 -12.57296 -12.31119 -12.05247 -11.92059 -11.65337 -11.35770 -11.20778 -11.17212 -11.02813 -10.70676 -10.47117 -10.26449 -9.61271 -9.37406 -9.32800 -9.27274 -8.94249 -8.70487 -8.37150 -7.16818 -6.98221 -6.67199 -4.24061 1.19154 1.63384 2.83585 3.10338 3.14182 3.21590 3.30320 3.42110 3.84983 3.97301 4.25461 4.67150 4.99888 5.11288 5.18651 5.46775 5.65229 5.75068 5.80448 6.12380 6.17590 6.27829 6.35509 6.44939 6.56126 6.58310 6.69294 6.78070 6.87895 7.05326 7.10206 7.13402 7.21904 7.44274 7.51486 7.68206 7.77704 8.03284 8.17510 8.28541 8.41571 8.74733 8.74946 8.97903 9.11698 10.22518 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.005021 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.064604 B = 5575.144095 C = 5969.867296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.005 4.005 3 C -0.165 4.165 4 C 0.123 3.877 5 C -0.458 4.458 6 H 0.077 0.923 7 C 0.077 3.923 8 N -0.787 5.787 9 Si 0.907 3.093 10 H -0.268 1.268 11 H -0.278 1.278 12 H -0.262 1.262 13 C -0.236 4.236 14 C -0.063 4.063 15 C -0.194 4.194 16 C 0.076 3.924 17 C -0.132 4.132 18 C -0.095 4.095 19 C -0.155 4.155 20 C -0.090 4.090 21 C -0.148 4.148 22 C 0.547 3.453 23 N -0.866 5.866 24 O -0.487 6.487 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.115 0.885 29 H 0.280 0.720 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.392 0.608 37 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 -11.848 -3.296 14.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.005 4.005 3 C -0.184 4.184 4 C 0.121 3.879 5 C -0.487 4.487 6 H 0.095 0.905 7 C -0.142 4.142 8 N -0.412 5.412 9 Si 0.731 3.269 10 H -0.193 1.193 11 H -0.203 1.203 12 H -0.186 1.186 13 C -0.256 4.256 14 C -0.082 4.082 15 C -0.195 4.195 16 C 0.075 3.925 17 C -0.150 4.150 18 C -0.113 4.113 19 C -0.173 4.173 20 C -0.109 4.109 21 C -0.152 4.152 22 C 0.333 3.667 23 N -0.432 5.432 24 O -0.359 6.359 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.133 0.867 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.220 0.780 37 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -7.003 -11.020 -2.969 13.390 hybrid contribution -0.081 0.470 -0.500 0.691 sum -7.084 -10.550 -3.469 13.172 Atomic orbital electron populations 1.20778 0.94642 1.00656 0.99744 1.18846 0.92993 0.92447 0.96240 1.20729 0.94111 0.95943 1.07631 1.17616 0.92036 0.91935 0.86325 1.19604 1.01316 0.92538 1.35253 0.90457 1.25946 0.94198 1.01401 0.92616 1.69815 1.18288 1.31322 1.21793 0.86341 0.80483 0.81017 0.79048 1.19266 1.20336 1.18596 1.20546 0.97398 0.92607 1.15039 1.20113 0.92287 0.96238 0.99530 1.17637 0.92134 0.89448 1.20297 1.19096 0.90304 0.93078 0.89984 1.21456 1.00784 0.94291 0.98498 1.21207 0.95915 0.96326 0.97862 1.20913 1.01710 1.00046 0.94640 1.21121 0.98142 0.93529 0.98089 1.20057 1.03327 0.95889 0.95895 1.18274 0.79321 0.86342 0.82756 1.43870 1.52037 1.25919 1.21371 1.91055 1.42618 1.22931 1.79322 0.93457 0.93117 0.93382 0.86748 0.90902 0.89252 0.89871 0.85528 0.86281 0.86355 0.86512 0.77961 0.77080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.19 8.70 36.01 0.31 -1.88 16 2 C 0.00 -0.12 3.98 -104.68 -0.42 -0.54 16 3 C -0.16 -4.54 8.26 -39.28 -0.32 -4.87 16 4 C 0.12 3.47 5.57 -106.80 -0.60 2.87 16 5 C -0.46 -12.65 9.03 -37.85 -0.34 -12.99 16 6 H 0.08 2.06 7.91 -52.49 -0.42 1.64 16 7 C 0.08 1.99 5.13 -17.32 -0.09 1.90 16 8 N -0.79 -20.91 10.96 55.56 0.61 -20.30 16 9 Si 0.91 19.23 29.60 -169.99 -5.03 14.20 16 10 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 13 C -0.24 -6.16 9.73 -39.28 -0.38 -6.54 16 14 C -0.06 -1.52 9.66 -39.64 -0.38 -1.90 16 15 C -0.19 -4.53 3.96 -104.66 -0.41 -4.94 16 16 C 0.08 1.48 4.63 -104.54 -0.48 0.99 16 17 C -0.13 -2.18 9.73 -39.23 -0.38 -2.56 16 18 C -0.09 -1.25 10.02 -39.56 -0.40 -1.64 16 19 C -0.15 -1.86 10.02 -39.54 -0.40 -2.26 16 20 C -0.09 -1.16 9.53 -39.22 -0.37 -1.54 16 21 C -0.15 -2.52 4.77 -104.63 -0.50 -3.01 16 22 C 0.55 9.66 6.53 -12.44 -0.08 9.58 16 23 N -0.87 -10.45 8.82 30.47 0.27 -10.18 16 24 O -0.49 -11.03 12.74 5.30 0.07 -10.96 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 27 H 0.05 0.96 4.29 -51.93 -0.22 0.73 16 28 H 0.11 3.27 6.16 -52.49 -0.32 2.95 16 29 H 0.28 6.75 8.29 -40.82 -0.34 6.41 16 30 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 31 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.08 6.40 -52.49 -0.34 0.74 16 36 H 0.39 3.36 6.86 -40.82 -0.28 3.08 16 37 H 0.40 4.32 8.93 -40.82 -0.36 3.96 16 LS Contribution 308.06 15.07 4.64 4.64 Total: -1.00 -31.96 308.06 -8.72 -40.68 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -4.03 Total: 11.25 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -5.25 Total: -29.34 kcal Atomic # 7 Polarization: -31.36 SS G_CDS: 0.88 Total: -30.48 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.96 -8.72 -40.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239761882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.072 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds