Wall clock time and date at job start Tue Mar 31 2020 05:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38884 * 119.24039 * 2 1 4 4 C 1.36878 * 119.80909 * 180.27949 * 3 2 1 5 5 C 1.41116 * 118.40100 * 359.43417 * 4 3 2 6 6 C 1.40857 * 120.71726 * 180.29796 * 5 4 3 7 7 H 1.08001 * 119.99445 * 152.88689 * 6 5 4 8 8 C 1.40038 * 119.99900 * 332.88092 * 6 5 4 9 9 N 1.30789 * 120.00330 * 345.47908 * 8 6 5 10 10 Si 1.86809 * 119.99671 * 165.47513 * 8 6 5 11 11 H 1.48500 * 109.47002 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47000 * 120.00228 * 10 8 6 13 13 H 1.48501 * 109.47188 * 240.00388 * 10 8 6 14 14 C 1.41921 * 118.55939 * 0.27180 * 5 4 3 15 15 C 1.47682 * 119.99834 * 180.02562 * 14 5 4 16 16 C 1.39801 * 120.27016 * 316.07650 * 15 14 5 17 17 C 1.37499 * 120.19460 * 179.89334 * 16 15 14 18 18 C 1.39584 * 120.43312 * 0.61447 * 17 16 15 19 19 C 1.39176 * 119.12277 * 359.36501 * 18 17 16 20 20 C 1.37344 * 120.93650 * 0.43554 * 19 18 17 21 21 C 1.51670 * 107.00364 * 180.70071 * 19 18 17 22 22 C 1.54694 * 101.91069 * 15.50107 * 21 19 18 23 23 O 1.36072 * 129.71198 * 179.05782 * 18 17 16 24 24 N 1.31730 * 119.24507 * 179.69408 * 2 1 3 25 25 H 1.09000 * 109.47530 * 270.29521 * 1 2 3 26 26 H 1.09001 * 109.47123 * 30.30585 * 1 2 3 27 27 H 1.09001 * 109.46887 * 150.29857 * 1 2 3 28 28 H 1.07996 * 120.09513 * 359.97438 * 3 2 1 29 29 H 1.08005 * 120.79280 * 179.69839 * 4 3 2 30 30 H 0.97009 * 119.99548 * 179.97438 * 9 8 6 31 31 H 1.08001 * 119.90395 * 0.17055 * 16 15 14 32 32 H 1.08001 * 119.78104 * 180.32559 * 17 16 15 33 33 H 1.07998 * 120.07461 * 179.80733 * 20 19 18 34 34 H 1.09003 * 110.94462 * 133.65401 * 21 19 18 35 35 H 1.08995 * 110.94271 * 257.30859 * 21 19 18 36 36 H 1.08999 * 110.74437 * 92.95116 * 22 21 19 37 37 H 1.08997 * 110.74557 * 216.10939 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2119 0.0000 4 6 3.5541 1.2255 -0.0058 5 6 4.2377 -0.0091 0.0006 6 6 5.6456 -0.0520 0.0014 7 1 6.1597 -0.8985 0.4321 8 6 6.3785 1.0029 -0.5564 9 7 5.7828 1.8802 -1.3219 10 14 8.2072 1.1569 -0.2071 11 1 8.6369 0.0462 0.6801 12 1 8.9623 1.0904 -1.4839 13 1 8.4760 2.4561 0.4600 14 6 3.4758 -1.2064 0.0068 15 6 4.1584 -2.5160 0.0142 16 6 5.2556 -2.7434 -0.8217 17 6 5.8914 -3.9625 -0.8120 18 6 5.4414 -4.9880 0.0212 19 6 4.3490 -4.7558 0.8517 20 6 3.7089 -3.5407 0.8532 21 6 4.1108 -6.0307 1.6381 22 6 5.4366 -6.7959 1.4149 23 8 5.9102 -6.2568 0.1693 24 7 2.1506 -1.1494 0.0061 25 1 -0.3634 0.0053 1.0276 26 1 -0.3633 0.8872 -0.5186 27 1 -0.3633 -0.8927 -0.5092 28 1 1.6346 2.1408 -0.0004 29 1 4.0978 2.1587 -0.0108 30 1 6.2906 2.6111 -1.7079 31 1 5.6077 -1.9578 -1.4738 32 1 6.7417 -4.1293 -1.4567 33 1 2.8606 -3.3767 1.5011 34 1 3.9595 -5.8137 2.6955 35 1 3.2661 -6.5869 1.2318 36 1 6.1425 -6.5878 2.2188 37 1 5.2545 -7.8673 1.3306 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239803839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:46 Heat of formation + Delta-G solvation = 8.537417 kcal Electronic energy + Delta-G solvation = -21097.871478 eV Core-core repulsion = 17997.476214 eV Total energy + Delta-G solvation = -3100.395263 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56654 -38.71203 -36.63392 -34.36540 -32.32920 -31.81346 -30.87175 -28.86921 -28.77778 -27.62146 -24.50514 -23.20232 -22.28583 -21.39037 -20.68891 -19.88582 -17.46469 -16.89058 -16.16770 -15.91139 -15.57989 -15.30245 -14.34930 -14.01581 -13.52668 -13.41147 -13.06733 -12.80312 -12.70385 -12.57216 -12.22053 -12.16668 -11.78184 -11.58501 -11.54602 -11.44380 -11.30072 -11.00991 -10.99862 -10.58037 -10.38739 -10.17784 -9.81300 -9.44904 -8.41928 -8.28133 -8.10133 -7.78369 -7.17026 -6.89184 -4.53313 1.77078 1.99755 2.57604 2.92126 2.98088 3.04129 3.11029 3.64208 3.78388 4.33994 4.49358 4.72890 4.88798 5.13612 5.34160 5.39607 5.51754 5.61556 5.74747 5.87169 6.01532 6.04835 6.10753 6.15835 6.22574 6.33692 6.37716 6.50177 6.60145 6.80303 6.83201 6.93871 6.96163 7.01868 7.18770 7.22589 7.41298 7.62643 7.71231 7.84586 7.88785 8.34237 8.55768 8.62917 9.55328 9.94600 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012789 B = 0.006968 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.848442 B = 4017.309780 C = 5921.387236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.009 4.009 3 C -0.143 4.143 4 C -0.127 4.127 5 C 0.083 3.917 6 C -0.440 4.440 7 H 0.090 0.910 8 C 0.074 3.926 9 N -0.786 5.786 10 Si 0.908 3.092 11 H -0.256 1.256 12 H -0.271 1.271 13 H -0.270 1.270 14 C 0.020 3.980 15 C 0.001 3.999 16 C -0.062 4.062 17 C -0.141 4.141 18 C 0.077 3.923 19 C -0.184 4.184 20 C -0.061 4.061 21 C -0.106 4.106 22 C 0.053 3.947 23 O -0.312 6.312 24 N -0.450 5.450 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.285 0.715 31 H 0.144 0.856 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 -7.226 3.484 8.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.150 4.150 3 C -0.164 4.164 4 C -0.153 4.153 5 C 0.079 3.921 6 C -0.469 4.469 7 H 0.108 0.892 8 C -0.145 4.145 9 N -0.410 5.410 10 Si 0.732 3.268 11 H -0.180 1.180 12 H -0.196 1.196 13 H -0.195 1.195 14 C -0.118 4.118 15 C 0.000 4.000 16 C -0.080 4.080 17 C -0.160 4.160 18 C 0.033 3.967 19 C -0.185 4.185 20 C -0.079 4.079 21 C -0.143 4.143 22 C -0.022 4.022 23 O -0.227 6.227 24 N -0.158 5.158 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.144 0.856 30 H 0.096 0.904 31 H 0.161 0.839 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.366 -7.906 3.196 8.535 hybrid contribution 1.187 1.112 0.222 1.642 sum 0.821 -6.794 3.418 7.650 Atomic orbital electron populations 1.20283 0.91559 1.00928 1.00377 1.20252 0.94831 0.88543 1.11400 1.21249 0.95446 0.97116 1.02555 1.21392 0.92604 0.98800 1.02492 1.18334 0.94118 0.90791 0.88883 1.19656 0.91025 1.04162 1.32025 0.89181 1.26001 1.01586 0.94220 0.92706 1.69773 1.38851 1.11265 1.21125 0.86233 0.81406 0.79651 0.79553 1.17957 1.19624 1.19529 1.19347 0.88257 0.91051 1.13152 1.18271 0.94770 0.91876 0.95086 1.21227 0.94239 0.95167 0.97406 1.20111 1.02402 0.91088 1.02417 1.19587 0.93865 0.84782 0.98515 1.20513 0.98903 0.96010 1.03035 1.20374 0.98626 0.90556 0.98391 1.21698 0.98115 0.93659 1.00818 1.23701 0.94474 0.98637 0.85415 1.86729 1.72319 1.25083 1.38572 1.66859 1.09619 1.29255 1.10064 0.93214 0.92913 0.92602 0.88354 0.85564 0.90436 0.83875 0.86181 0.86306 0.89708 0.89816 0.91145 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.15 36.01 0.37 -0.96 16 2 C -0.01 -0.19 6.79 -82.40 -0.56 -0.75 16 3 C -0.14 -3.26 9.65 -39.83 -0.38 -3.64 16 4 C -0.13 -3.15 8.73 -38.98 -0.34 -3.49 16 5 C 0.08 2.12 5.55 -106.41 -0.59 1.53 16 6 C -0.44 -10.76 6.77 -37.92 -0.26 -11.01 16 7 H 0.09 2.17 6.42 -52.49 -0.34 1.84 16 8 C 0.07 1.72 5.21 -17.32 -0.09 1.63 16 9 N -0.79 -18.81 10.98 55.55 0.61 -18.20 16 10 Si 0.91 17.57 29.58 -169.99 -5.03 12.54 16 11 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 12 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 13 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 14 C 0.02 0.49 6.43 -82.25 -0.53 -0.04 16 15 C 0.00 0.02 5.25 -104.85 -0.55 -0.53 16 16 C -0.06 -1.29 7.81 -39.27 -0.31 -1.59 16 17 C -0.14 -2.66 10.05 -39.35 -0.40 -3.05 16 18 C 0.08 1.41 7.05 -38.73 -0.27 1.14 16 19 C -0.18 -3.28 6.26 -104.12 -0.65 -3.93 16 20 C -0.06 -1.22 9.66 -39.30 -0.38 -1.60 16 21 C -0.11 -1.40 7.12 -26.51 -0.19 -1.59 16 22 C 0.05 0.65 8.00 38.05 0.30 0.95 16 23 O -0.31 -5.17 11.10 -19.97 -0.22 -5.39 16 24 N -0.45 -10.93 10.06 -5.46 -0.05 -10.99 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 29 H 0.13 3.15 6.34 -52.48 -0.33 2.82 16 30 H 0.28 6.18 8.30 -40.82 -0.34 5.84 16 31 H 0.14 3.09 6.76 -52.49 -0.35 2.73 16 32 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -27.63 312.40 -9.20 -36.82 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -4.38 Total: 7.44 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -4.83 Total: -26.93 kcal Atomic # 7 Polarization: -29.75 SS G_CDS: 0.55 Total: -29.19 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.22 Total: -5.39 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.63 -9.20 -36.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239803839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.359 kcal (2) G-P(sol) polarization free energy of solvation -27.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds