Wall clock time and date at job start Tue Mar 31 2020 05:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38884 * 119.24039 * 2 1 4 4 C 1.36878 * 119.80909 * 180.27949 * 3 2 1 5 5 C 1.41116 * 118.40100 * 359.43417 * 4 3 2 6 6 C 1.40857 * 120.71726 * 180.29796 * 5 4 3 7 7 H 1.08001 * 119.99445 * 152.88689 * 6 5 4 8 8 C 1.40038 * 119.99900 * 332.88092 * 6 5 4 9 9 N 1.30789 * 120.00330 * 345.47908 * 8 6 5 10 10 Si 1.86809 * 119.99671 * 165.47513 * 8 6 5 11 11 H 1.48500 * 109.47002 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47000 * 120.00228 * 10 8 6 13 13 H 1.48501 * 109.47188 * 240.00388 * 10 8 6 14 14 C 1.41921 * 118.55939 * 0.27180 * 5 4 3 15 15 C 1.47682 * 119.99834 * 180.02562 * 14 5 4 16 16 C 1.39801 * 120.27016 * 316.07650 * 15 14 5 17 17 C 1.37499 * 120.19460 * 179.89334 * 16 15 14 18 18 C 1.39584 * 120.43312 * 0.61447 * 17 16 15 19 19 C 1.39176 * 119.12277 * 359.36501 * 18 17 16 20 20 C 1.37344 * 120.93650 * 0.43554 * 19 18 17 21 21 C 1.51670 * 107.00364 * 180.70071 * 19 18 17 22 22 C 1.54694 * 101.91069 * 15.50107 * 21 19 18 23 23 O 1.36072 * 129.71198 * 179.05782 * 18 17 16 24 24 N 1.31730 * 119.24507 * 179.69408 * 2 1 3 25 25 H 1.09000 * 109.47530 * 270.29521 * 1 2 3 26 26 H 1.09001 * 109.47123 * 30.30585 * 1 2 3 27 27 H 1.09001 * 109.46887 * 150.29857 * 1 2 3 28 28 H 1.07996 * 120.09513 * 359.97438 * 3 2 1 29 29 H 1.08005 * 120.79280 * 179.69839 * 4 3 2 30 30 H 0.97009 * 119.99548 * 179.97438 * 9 8 6 31 31 H 1.08001 * 119.90395 * 0.17055 * 16 15 14 32 32 H 1.08001 * 119.78104 * 180.32559 * 17 16 15 33 33 H 1.07998 * 120.07461 * 179.80733 * 20 19 18 34 34 H 1.09003 * 110.94462 * 133.65401 * 21 19 18 35 35 H 1.08995 * 110.94271 * 257.30859 * 21 19 18 36 36 H 1.08999 * 110.74437 * 92.95116 * 22 21 19 37 37 H 1.08997 * 110.74557 * 216.10939 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2119 0.0000 4 6 3.5541 1.2255 -0.0058 5 6 4.2377 -0.0091 0.0006 6 6 5.6456 -0.0520 0.0014 7 1 6.1597 -0.8985 0.4321 8 6 6.3785 1.0029 -0.5564 9 7 5.7828 1.8802 -1.3219 10 14 8.2072 1.1569 -0.2071 11 1 8.6369 0.0462 0.6801 12 1 8.9623 1.0904 -1.4839 13 1 8.4760 2.4561 0.4600 14 6 3.4758 -1.2064 0.0068 15 6 4.1584 -2.5160 0.0142 16 6 5.2556 -2.7434 -0.8217 17 6 5.8914 -3.9625 -0.8120 18 6 5.4414 -4.9880 0.0212 19 6 4.3490 -4.7558 0.8517 20 6 3.7089 -3.5407 0.8532 21 6 4.1108 -6.0307 1.6381 22 6 5.4366 -6.7959 1.4149 23 8 5.9102 -6.2568 0.1693 24 7 2.1506 -1.1494 0.0061 25 1 -0.3634 0.0053 1.0276 26 1 -0.3633 0.8872 -0.5186 27 1 -0.3633 -0.8927 -0.5092 28 1 1.6346 2.1408 -0.0004 29 1 4.0978 2.1587 -0.0108 30 1 6.2906 2.6111 -1.7079 31 1 5.6077 -1.9578 -1.4738 32 1 6.7417 -4.1293 -1.4567 33 1 2.8606 -3.3767 1.5011 34 1 3.9595 -5.8137 2.6955 35 1 3.2661 -6.5869 1.2318 36 1 6.1425 -6.5878 2.2188 37 1 5.2545 -7.8673 1.3306 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239803839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:45 Heat of formation + Delta-G solvation = -5.408294 kcal Electronic energy + Delta-G solvation = -21098.476209 eV Core-core repulsion = 17997.476214 eV Total energy + Delta-G solvation = -3100.999995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.89381 -40.44864 -38.12975 -36.13760 -33.68879 -33.38854 -32.66980 -30.35075 -30.19989 -29.25903 -26.18827 -24.60834 -23.76531 -22.84557 -22.40306 -21.46402 -19.27063 -18.23664 -17.58187 -17.31429 -17.16442 -16.78827 -16.03637 -15.69432 -15.01710 -14.95058 -14.59717 -14.28265 -14.09199 -13.98116 -13.76791 -13.59823 -13.27116 -13.18532 -13.09701 -12.88303 -12.66737 -12.62859 -12.50584 -12.15855 -11.72673 -11.64358 -11.50154 -11.17927 -10.21948 -9.93070 -9.79870 -9.46480 -8.83024 -8.58916 -6.37150 0.17047 0.48774 0.85897 1.15669 1.37602 1.47804 1.51858 2.16405 2.40451 2.67895 2.85886 3.54434 3.64436 3.72818 3.91257 4.04243 4.22335 4.37367 4.42698 4.51505 4.58301 4.63430 4.65909 4.73117 4.90535 4.93969 4.96181 4.97700 5.00549 5.14132 5.21583 5.29114 5.33273 5.43365 5.51344 5.70043 5.75750 5.85568 6.02588 6.08119 6.32779 6.51732 6.73751 6.80774 7.73278 8.22368 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012789 B = 0.006968 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.848442 B = 4017.309780 C = 5921.387236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.019 4.019 3 C -0.148 4.148 4 C -0.149 4.149 5 C 0.053 3.947 6 C -0.458 4.458 7 H 0.084 0.916 8 C 0.040 3.960 9 N -0.816 5.816 10 Si 0.975 3.025 11 H -0.259 1.259 12 H -0.263 1.263 13 H -0.263 1.263 14 C 0.006 3.994 15 C -0.030 4.030 16 C -0.072 4.072 17 C -0.145 4.145 18 C 0.079 3.921 19 C -0.184 4.184 20 C -0.068 4.068 21 C -0.103 4.103 22 C 0.049 3.951 23 O -0.321 6.321 24 N -0.468 5.468 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.127 0.873 29 H 0.116 0.884 30 H 0.293 0.707 31 H 0.125 0.875 32 H 0.140 0.860 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 -8.975 4.361 9.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.175 4.175 5 C 0.049 3.951 6 C -0.487 4.487 7 H 0.102 0.898 8 C -0.177 4.177 9 N -0.441 5.441 10 Si 0.796 3.204 11 H -0.182 1.182 12 H -0.188 1.188 13 H -0.187 1.187 14 C -0.131 4.131 15 C -0.031 4.031 16 C -0.091 4.091 17 C -0.163 4.163 18 C 0.034 3.966 19 C -0.185 4.185 20 C -0.087 4.087 21 C -0.139 4.139 22 C -0.025 4.025 23 O -0.236 6.236 24 N -0.177 5.177 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.145 0.855 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.143 0.857 32 H 0.158 0.842 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.235 -9.666 4.077 10.493 hybrid contribution 1.059 1.534 -0.033 1.864 sum 0.824 -8.132 4.044 9.119 Atomic orbital electron populations 1.20340 0.88056 1.02229 1.01960 1.21086 0.97263 0.88083 1.09621 1.21563 0.94903 0.98600 1.01746 1.21449 0.93726 0.98332 1.04011 1.18677 0.95019 0.91479 0.89937 1.19706 0.91033 1.04861 1.33077 0.89823 1.26731 1.05564 0.93431 0.91945 1.69808 1.40642 1.11890 1.21721 0.85240 0.76151 0.79567 0.79489 1.18210 1.18759 1.18707 1.19777 0.88672 0.92074 1.12615 1.18364 0.95881 0.91852 0.96994 1.21050 0.94561 0.95799 0.97643 1.20250 1.02683 0.90589 1.02827 1.19712 0.93729 0.85420 0.97706 1.20954 0.97938 0.96684 1.02936 1.20358 0.98920 0.91153 0.98255 1.21859 0.99410 0.91221 1.01455 1.24109 0.93967 1.00384 0.84062 1.86726 1.72390 1.23733 1.40775 1.66981 1.09602 1.30122 1.10956 0.91376 0.90516 0.92374 0.85507 0.86567 0.89643 0.85713 0.84240 0.86520 0.87616 0.88152 0.89614 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.33 10.15 71.24 0.72 -1.61 16 2 C -0.02 -0.86 6.79 42.73 0.29 -0.57 16 3 C -0.15 -6.80 9.65 22.11 0.21 -6.59 16 4 C -0.15 -7.69 8.73 22.66 0.20 -7.49 16 5 C 0.05 2.84 5.55 -21.02 -0.12 2.73 16 6 C -0.46 -23.49 6.77 23.35 0.16 -23.33 16 7 H 0.08 4.26 6.42 -2.91 -0.02 4.24 16 8 C 0.04 1.90 5.21 85.28 0.44 2.35 16 9 N -0.82 -40.31 10.98 21.84 0.24 -40.07 16 10 Si 0.97 36.59 29.58 68.60 2.03 38.62 16 11 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 12 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 13 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 14 C 0.01 0.32 6.43 42.43 0.27 0.60 16 15 C -0.03 -1.38 5.25 -20.01 -0.11 -1.49 16 16 C -0.07 -3.11 7.81 22.47 0.18 -2.93 16 17 C -0.14 -5.44 10.05 22.42 0.23 -5.22 16 18 C 0.08 2.80 7.05 22.82 0.16 2.96 16 19 C -0.18 -6.32 6.26 -19.54 -0.12 -6.45 16 20 C -0.07 -2.76 9.66 22.45 0.22 -2.54 16 21 C -0.10 -2.36 7.12 30.73 0.22 -2.15 16 22 C 0.05 0.99 8.00 72.56 0.58 1.57 16 23 O -0.32 -9.71 11.10 -94.37 -1.05 -10.76 16 24 N -0.47 -23.29 10.06 -171.18 -1.72 -25.01 16 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.08 2.23 8.07 -2.39 -0.02 2.21 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 28 H 0.13 4.93 8.06 -2.91 -0.02 4.90 16 29 H 0.12 6.08 6.34 -2.91 -0.02 6.07 16 30 H 0.29 12.99 8.30 -92.70 -0.77 12.22 16 31 H 0.12 5.77 6.76 -2.91 -0.02 5.75 16 32 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -62.16 312.40 4.12 -58.04 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 1.09 Total: 29.33 kcal Atomic # 6 Polarization: -53.68 SS G_CDS: 3.53 Total: -50.15 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -1.48 Total: -65.08 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -1.05 Total: -10.76 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Total: -62.16 4.12 -58.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239803839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.632 kcal (2) G-P(sol) polarization free energy of solvation -62.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds