Wall clock time and date at job start Tue Mar 31 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31261 * 119.79344 * 2 1 4 4 C 1.33067 * 121.71485 * 180.02562 * 3 2 1 5 5 C 1.47839 * 119.45451 * 179.97438 * 4 3 2 6 6 C 1.39731 * 120.26615 * 179.71846 * 5 4 3 7 7 C 1.37520 * 120.19894 * 179.89400 * 6 5 4 8 8 C 1.39561 * 120.43195 * 0.59961 * 7 6 5 9 9 C 1.39162 * 119.10664 * 359.38537 * 8 7 6 10 10 C 1.37356 * 120.93113 * 0.41965 * 9 8 7 11 11 C 1.51675 * 107.00165 * 180.69168 * 9 8 7 12 12 C 1.54690 * 101.91088 * 15.49470 * 11 9 8 13 13 O 1.36079 * 129.72452 * 179.06114 * 8 7 6 14 14 C 1.39963 * 121.09117 * 359.73901 * 4 3 2 15 15 C 1.36566 * 119.46054 * 0.53715 * 14 4 3 16 16 C 1.40946 * 119.79983 * 180.02562 * 2 1 3 17 17 C 1.41026 * 120.55204 * 359.97438 * 16 2 1 18 18 H 1.08001 * 119.99512 * 329.92042 * 17 16 2 19 19 C 1.39993 * 120.00064 * 149.91287 * 17 16 2 20 20 N 1.30818 * 119.99778 * 162.18373 * 19 17 16 21 21 Si 1.86796 * 120.00278 * 342.18056 * 19 17 16 22 22 H 1.48506 * 109.47014 * 95.38854 * 21 19 17 23 23 H 1.48502 * 109.47330 * 215.38761 * 21 19 17 24 24 H 1.48498 * 109.47057 * 335.39108 * 21 19 17 25 25 H 1.09000 * 109.46749 * 269.97846 * 1 2 3 26 26 H 1.08995 * 109.47499 * 29.97628 * 1 2 3 27 27 H 1.08998 * 109.46529 * 149.98054 * 1 2 3 28 28 H 1.08002 * 119.90378 * 0.15320 * 6 5 4 29 29 H 1.08004 * 119.78171 * 180.33321 * 7 6 5 30 30 H 1.07999 * 120.06866 * 179.80969 * 10 9 8 31 31 H 1.09005 * 110.94328 * 133.65310 * 11 9 8 32 32 H 1.09004 * 110.94106 * 257.30442 * 11 9 8 33 33 H 1.09004 * 110.74618 * 92.95777 * 12 11 9 34 34 H 1.09008 * 110.74383 * 216.10796 * 12 11 9 35 35 H 1.07996 * 120.27179 * 180.26869 * 14 4 3 36 36 H 1.08003 * 120.78634 * 179.75784 * 15 14 4 37 37 H 0.96992 * 119.99747 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1391 0.0000 4 6 3.4892 1.1837 -0.0005 5 6 4.1726 2.4947 -0.0011 6 6 5.5683 2.5613 0.0043 7 6 6.2026 3.7815 0.0016 8 6 5.4609 4.9637 0.0061 9 6 4.0712 4.8911 0.0002 10 6 3.4277 3.6776 -0.0011 11 6 3.5526 6.3164 -0.0105 12 6 4.8159 7.1128 -0.4138 13 8 5.8853 6.2566 0.0216 14 6 4.2517 0.0101 0.0044 15 6 3.6206 -1.2010 -0.0014 16 6 2.2075 -1.2231 -0.0005 17 6 1.5099 -2.4487 -0.0006 18 1 0.5395 -2.5177 0.4686 19 6 2.0751 -3.5758 -0.6088 20 7 1.6227 -4.7695 -0.3225 21 14 3.4750 -3.3754 -1.8292 22 1 4.7721 -3.5523 -1.1280 23 1 3.3481 -4.3963 -2.9002 24 1 3.4178 -2.0184 -2.4295 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3632 -0.8898 -0.5141 28 1 6.1507 1.6518 0.0064 29 1 7.2817 3.8251 0.0004 30 1 2.3484 3.6374 -0.0026 31 1 2.7623 6.4379 -0.7514 32 1 3.2047 6.6118 0.9794 33 1 4.8527 7.2576 -1.4936 34 1 4.8498 8.0713 0.1041 35 1 5.3304 0.0617 0.0083 36 1 4.1879 -2.1200 -0.0017 37 1 2.0141 -5.5504 -0.7442 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239805367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:48 Heat of formation + Delta-G solvation = 10.168879 kcal Electronic energy + Delta-G solvation = -20661.334198 eV Core-core repulsion = 17561.009681 eV Total energy + Delta-G solvation = -3100.324518 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.79222 -38.99187 -36.98227 -34.18654 -32.63185 -32.11795 -31.65606 -29.34677 -29.01446 -27.22577 -25.12101 -23.22499 -22.40426 -21.70472 -21.08244 -19.87156 -17.69888 -17.15823 -16.39192 -16.25044 -15.97835 -15.15674 -14.92579 -13.96545 -13.53916 -13.48233 -13.44823 -13.04860 -12.98746 -12.82134 -12.67901 -12.41604 -12.03894 -11.77179 -11.68783 -11.46925 -11.42994 -11.17179 -10.90388 -10.60323 -10.55009 -10.27154 -10.00200 -9.63176 -8.62630 -8.53720 -8.27881 -8.24505 -7.26148 -7.19251 -4.68552 1.35511 1.69195 2.42435 2.62059 2.93914 3.04720 3.14683 3.43084 3.75805 3.98417 4.48753 4.53462 4.69666 4.97081 5.10967 5.16664 5.27709 5.38382 5.50100 5.63163 5.71044 5.78164 5.85969 5.95310 5.99642 6.19634 6.26618 6.44520 6.48547 6.54862 6.65687 6.67617 6.74247 6.78709 6.88358 6.98619 7.16592 7.34525 7.50059 7.51518 7.67769 8.02066 8.28332 8.44991 9.32446 9.73564 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031686 B = 0.004133 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.449093 B = 6773.397804 C = 7432.115217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.032 3.968 3 N -0.442 5.442 4 C 0.001 3.999 5 C -0.006 4.006 6 C -0.102 4.102 7 C -0.130 4.130 8 C 0.071 3.929 9 C -0.172 4.172 10 C -0.061 4.061 11 C -0.108 4.108 12 C 0.053 3.947 13 O -0.311 6.311 14 C -0.102 4.102 15 C -0.213 4.213 16 C 0.050 3.950 17 C -0.412 4.412 18 H 0.102 0.898 19 C 0.082 3.918 20 N -0.786 5.786 21 Si 0.912 3.088 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.243 1.243 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.130 0.870 29 H 0.122 0.878 30 H 0.132 0.868 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.368 12.789 -1.425 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 N -0.150 5.150 4 C -0.131 4.131 5 C -0.007 4.007 6 C -0.121 4.121 7 C -0.148 4.148 8 C 0.026 3.974 9 C -0.173 4.173 10 C -0.080 4.080 11 C -0.145 4.145 12 C -0.022 4.022 13 O -0.226 6.226 14 C -0.122 4.122 15 C -0.237 4.237 16 C 0.044 3.956 17 C -0.440 4.440 18 H 0.120 0.880 19 C -0.141 4.141 20 N -0.408 5.408 21 Si 0.737 3.263 22 H -0.192 1.192 23 H -0.212 1.212 24 H -0.166 1.166 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.148 0.852 29 H 0.140 0.860 30 H 0.150 0.850 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.099 13.367 -1.371 14.048 hybrid contribution 1.008 -1.009 -0.461 1.499 sum 5.107 12.359 -1.832 13.497 Atomic orbital electron populations 1.20316 0.90406 1.01637 1.00911 1.21039 0.95419 0.87507 1.07642 1.66794 1.08583 1.30325 1.09316 1.18622 0.88970 0.90414 1.15075 1.18487 0.91861 0.91749 0.98587 1.20904 0.93805 0.96587 1.00785 1.20009 0.99270 0.88948 1.06611 1.19554 0.92386 0.84818 1.00640 1.20640 0.93579 0.95017 1.08048 1.20393 1.00514 0.89158 0.97945 1.21742 0.98316 0.91397 1.03074 1.23728 0.84556 0.93909 1.00041 1.86737 1.38779 1.14153 1.82918 1.21210 0.98820 0.93116 0.99015 1.21012 0.94751 0.96643 1.11320 1.18502 0.91918 0.94240 0.90913 1.19578 1.05106 0.90843 1.28495 0.88040 1.26308 0.97076 0.94189 0.96495 1.69667 1.37531 0.99436 1.34138 0.86276 0.80065 0.80165 0.79771 1.19217 1.21214 1.16639 0.92859 0.92874 0.90986 0.85244 0.86042 0.85021 0.89377 0.89536 0.91023 0.88155 0.87518 0.87223 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 9.59 36.01 0.35 -1.13 16 2 C 0.03 0.74 6.86 -81.81 -0.56 0.18 16 3 N -0.44 -10.16 9.32 -5.40 -0.05 -10.21 16 4 C 0.00 0.03 6.74 -82.76 -0.56 -0.53 16 5 C -0.01 -0.11 5.89 -104.83 -0.62 -0.73 16 6 C -0.10 -1.71 9.39 -39.29 -0.37 -2.07 16 7 C -0.13 -2.02 10.05 -39.35 -0.40 -2.41 16 8 C 0.07 1.13 7.05 -38.75 -0.27 0.85 16 9 C -0.17 -2.71 6.26 -104.12 -0.65 -3.36 16 10 C -0.06 -1.10 9.56 -39.32 -0.38 -1.47 16 11 C -0.11 -1.25 7.12 -26.51 -0.19 -1.44 16 12 C 0.05 0.56 8.00 38.05 0.30 0.86 16 13 O -0.31 -4.53 11.10 -19.99 -0.22 -4.75 16 14 C -0.10 -2.19 9.38 -39.54 -0.37 -2.56 16 15 C -0.21 -4.94 7.21 -39.01 -0.28 -5.22 16 16 C 0.05 1.20 5.11 -106.64 -0.54 0.66 16 17 C -0.41 -10.22 8.53 -37.87 -0.32 -10.55 16 18 H 0.10 2.57 7.23 -52.49 -0.38 2.19 16 19 C 0.08 1.97 5.42 -17.33 -0.09 1.87 16 20 N -0.79 -19.18 13.93 55.55 0.77 -18.41 16 21 Si 0.91 19.41 24.52 -169.99 -4.17 15.24 16 22 H -0.27 -5.48 6.71 56.52 0.38 -5.10 16 23 H -0.29 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.24 -5.45 6.85 56.52 0.39 -5.06 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.40 6.85 -51.93 -0.36 1.05 16 28 H 0.13 1.94 6.15 -52.49 -0.32 1.62 16 29 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 30 H 0.13 2.39 7.53 -52.49 -0.40 1.99 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.11 1.95 6.16 -52.49 -0.32 1.63 16 36 H 0.11 2.47 4.82 -52.48 -0.25 2.21 16 37 H 0.29 6.40 8.30 -40.82 -0.34 6.06 16 LS Contribution 305.62 15.07 4.61 4.61 Total: -1.00 -27.44 305.62 -8.18 -35.61 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.16 Total: 4.97 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -4.95 Total: -27.06 kcal Atomic # 7 Polarization: -29.34 SS G_CDS: 0.72 Total: -28.62 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.22 Total: -4.75 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.17 Total: 15.24 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.44 -8.18 -35.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239805367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.779 kcal (2) G-P(sol) polarization free energy of solvation -27.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds