Wall clock time and date at job start Tue Mar 31 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31261 * 119.79344 * 2 1 4 4 C 1.33067 * 121.71485 * 180.02562 * 3 2 1 5 5 C 1.47839 * 119.45451 * 179.97438 * 4 3 2 6 6 C 1.39731 * 120.26615 * 179.71846 * 5 4 3 7 7 C 1.37520 * 120.19894 * 179.89400 * 6 5 4 8 8 C 1.39561 * 120.43195 * 0.59961 * 7 6 5 9 9 C 1.39162 * 119.10664 * 359.38537 * 8 7 6 10 10 C 1.37356 * 120.93113 * 0.41965 * 9 8 7 11 11 C 1.51675 * 107.00165 * 180.69168 * 9 8 7 12 12 C 1.54690 * 101.91088 * 15.49470 * 11 9 8 13 13 O 1.36079 * 129.72452 * 179.06114 * 8 7 6 14 14 C 1.39963 * 121.09117 * 359.73901 * 4 3 2 15 15 C 1.36566 * 119.46054 * 0.53715 * 14 4 3 16 16 C 1.40946 * 119.79983 * 180.02562 * 2 1 3 17 17 C 1.41026 * 120.55204 * 359.97438 * 16 2 1 18 18 H 1.08001 * 119.99512 * 329.92042 * 17 16 2 19 19 C 1.39993 * 120.00064 * 149.91287 * 17 16 2 20 20 N 1.30818 * 119.99778 * 162.18373 * 19 17 16 21 21 Si 1.86796 * 120.00278 * 342.18056 * 19 17 16 22 22 H 1.48506 * 109.47014 * 95.38854 * 21 19 17 23 23 H 1.48502 * 109.47330 * 215.38761 * 21 19 17 24 24 H 1.48498 * 109.47057 * 335.39108 * 21 19 17 25 25 H 1.09000 * 109.46749 * 269.97846 * 1 2 3 26 26 H 1.08995 * 109.47499 * 29.97628 * 1 2 3 27 27 H 1.08998 * 109.46529 * 149.98054 * 1 2 3 28 28 H 1.08002 * 119.90378 * 0.15320 * 6 5 4 29 29 H 1.08004 * 119.78171 * 180.33321 * 7 6 5 30 30 H 1.07999 * 120.06866 * 179.80969 * 10 9 8 31 31 H 1.09005 * 110.94328 * 133.65310 * 11 9 8 32 32 H 1.09004 * 110.94106 * 257.30442 * 11 9 8 33 33 H 1.09004 * 110.74618 * 92.95777 * 12 11 9 34 34 H 1.09008 * 110.74383 * 216.10796 * 12 11 9 35 35 H 1.07996 * 120.27179 * 180.26869 * 14 4 3 36 36 H 1.08003 * 120.78634 * 179.75784 * 15 14 4 37 37 H 0.96992 * 119.99747 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1391 0.0000 4 6 3.4892 1.1837 -0.0005 5 6 4.1726 2.4947 -0.0011 6 6 5.5683 2.5613 0.0043 7 6 6.2026 3.7815 0.0016 8 6 5.4609 4.9637 0.0061 9 6 4.0712 4.8911 0.0002 10 6 3.4277 3.6776 -0.0011 11 6 3.5526 6.3164 -0.0105 12 6 4.8159 7.1128 -0.4138 13 8 5.8853 6.2566 0.0216 14 6 4.2517 0.0101 0.0044 15 6 3.6206 -1.2010 -0.0014 16 6 2.2075 -1.2231 -0.0005 17 6 1.5099 -2.4487 -0.0006 18 1 0.5395 -2.5177 0.4686 19 6 2.0751 -3.5758 -0.6088 20 7 1.6227 -4.7695 -0.3225 21 14 3.4750 -3.3754 -1.8292 22 1 4.7721 -3.5523 -1.1280 23 1 3.3481 -4.3963 -2.9002 24 1 3.4178 -2.0184 -2.4295 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3632 -0.8898 -0.5141 28 1 6.1507 1.6518 0.0064 29 1 7.2817 3.8251 0.0004 30 1 2.3484 3.6374 -0.0026 31 1 2.7623 6.4379 -0.7514 32 1 3.2047 6.6118 0.9794 33 1 4.8527 7.2576 -1.4936 34 1 4.8498 8.0713 0.1041 35 1 5.3304 0.0617 0.0083 36 1 4.1879 -2.1200 -0.0017 37 1 2.0141 -5.5504 -0.7442 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239805367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:48 Heat of formation + Delta-G solvation = -4.550104 kcal Electronic energy + Delta-G solvation = -20661.972461 eV Core-core repulsion = 17561.009681 eV Total energy + Delta-G solvation = -3100.962781 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.93913 -40.67190 -38.30046 -35.93114 -33.98976 -33.52332 -33.35976 -30.75700 -30.16804 -28.89733 -26.70002 -24.48815 -23.86743 -22.99963 -22.58953 -21.37711 -19.46935 -18.32710 -17.86822 -17.57057 -17.08603 -16.77319 -16.47956 -15.46836 -15.18137 -14.93856 -14.83505 -14.63922 -14.27513 -14.09261 -13.91094 -13.75285 -13.55056 -13.45460 -13.02728 -12.94516 -12.73590 -12.60435 -12.53217 -12.12240 -11.81816 -11.71511 -11.62572 -11.35303 -10.33150 -10.00667 -9.89665 -9.73325 -9.03091 -8.70032 -6.51749 -0.09386 0.42296 0.72087 0.93285 1.23245 1.36278 1.44193 2.04421 2.34810 2.49023 2.89447 3.51365 3.52782 3.58643 3.74857 3.99304 4.12455 4.20144 4.24695 4.31773 4.39314 4.52429 4.65075 4.69253 4.74635 4.86499 4.88932 4.92413 4.96282 4.99537 5.07677 5.18459 5.24031 5.43043 5.46183 5.53641 5.63213 5.67250 5.84634 5.91873 6.18634 6.28379 6.50368 6.63744 7.55966 8.01892 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031686 B = 0.004133 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.449093 B = 6773.397804 C = 7432.115217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.013 3.987 3 N -0.457 5.457 4 C 0.011 3.989 5 C -0.044 4.044 6 C -0.094 4.094 7 C -0.134 4.134 8 C 0.076 3.924 9 C -0.181 4.181 10 C -0.069 4.069 11 C -0.107 4.107 12 C 0.050 3.950 13 O -0.321 6.321 14 C -0.112 4.112 15 C -0.220 4.220 16 C 0.031 3.969 17 C -0.444 4.444 18 H 0.079 0.921 19 C 0.054 3.946 20 N -0.822 5.822 21 Si 0.957 3.043 22 H -0.252 1.252 23 H -0.271 1.271 24 H -0.263 1.263 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.121 0.879 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.115 0.885 37 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.540 15.723 -1.887 17.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.133 4.133 3 N -0.166 5.166 4 C -0.123 4.123 5 C -0.045 4.045 6 C -0.113 4.113 7 C -0.152 4.152 8 C 0.030 3.970 9 C -0.182 4.182 10 C -0.088 4.088 11 C -0.144 4.144 12 C -0.025 4.025 13 O -0.236 6.236 14 C -0.132 4.132 15 C -0.245 4.245 16 C 0.026 3.974 17 C -0.473 4.473 18 H 0.097 0.903 19 C -0.164 4.164 20 N -0.446 5.446 21 Si 0.781 3.219 22 H -0.177 1.177 23 H -0.197 1.197 24 H -0.187 1.187 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.164 0.836 29 H 0.166 0.834 30 H 0.139 0.861 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.132 0.868 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.246 16.297 -1.828 17.548 hybrid contribution 0.451 -1.483 -0.276 1.575 sum 6.697 14.814 -2.104 16.393 Atomic orbital electron populations 1.20297 0.88668 1.02087 1.01607 1.21531 0.96972 0.87455 1.07318 1.66912 1.09364 1.30079 1.10202 1.19281 0.88934 0.92131 1.11938 1.18539 0.93107 0.90836 1.02060 1.21084 0.92781 0.97944 0.99453 1.20305 1.00720 0.88397 1.05791 1.19850 0.92533 0.85750 0.98836 1.21002 0.94058 0.96202 1.06959 1.20380 1.00111 0.89921 0.98347 1.21886 0.99368 0.88714 1.04455 1.24090 0.82566 0.94245 1.01551 1.86737 1.40389 1.13642 1.82798 1.21562 1.00691 0.92266 0.98652 1.21218 0.94515 0.97662 1.11123 1.18677 0.92739 0.94378 0.91635 1.19468 1.04927 0.91974 1.30920 0.90300 1.26805 0.98648 0.93758 0.97233 1.69675 1.39226 1.00028 1.35705 0.85592 0.78682 0.79166 0.78488 1.17696 1.19729 1.18680 0.91983 0.91344 0.91453 0.83589 0.83359 0.86082 0.87753 0.88321 0.89510 0.84816 0.84113 0.86755 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.80 9.59 71.24 0.68 -2.11 16 2 C 0.01 0.62 6.86 43.31 0.30 0.91 16 3 N -0.46 -21.13 9.32 -171.01 -1.59 -22.73 16 4 C 0.01 0.46 6.74 41.92 0.28 0.74 16 5 C -0.04 -1.65 5.89 -20.00 -0.12 -1.77 16 6 C -0.09 -2.90 9.39 22.46 0.21 -2.69 16 7 C -0.13 -3.71 10.05 22.42 0.23 -3.48 16 8 C 0.08 2.16 7.05 22.81 0.16 2.33 16 9 C -0.18 -5.25 6.26 -19.54 -0.12 -5.38 16 10 C -0.07 -2.38 9.56 22.44 0.21 -2.16 16 11 C -0.11 -2.10 7.12 30.74 0.22 -1.88 16 12 C 0.05 0.83 8.00 72.56 0.58 1.41 16 13 O -0.32 -8.08 11.10 -94.44 -1.05 -9.12 16 14 C -0.11 -4.71 9.38 22.30 0.21 -4.50 16 15 C -0.22 -10.23 7.21 22.64 0.16 -10.06 16 16 C 0.03 1.52 5.11 -21.17 -0.11 1.41 16 17 C -0.44 -23.08 8.53 23.38 0.20 -22.88 16 18 H 0.08 4.29 7.23 -2.91 -0.02 4.27 16 19 C 0.05 2.69 5.42 85.27 0.46 3.15 16 20 N -0.82 -41.47 13.93 21.84 0.30 -41.16 16 21 Si 0.96 40.16 24.52 68.60 1.68 41.84 16 22 H -0.25 -9.87 6.71 99.48 0.67 -9.20 16 23 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.26 -11.72 6.85 99.48 0.68 -11.04 16 25 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.07 2.75 6.85 -2.39 -0.02 2.73 16 28 H 0.15 3.91 6.15 -2.91 -0.02 3.89 16 29 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 30 H 0.12 4.36 7.53 -2.91 -0.02 4.34 16 31 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.13 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.14 4.80 6.16 -2.91 -0.02 4.78 16 36 H 0.11 5.10 4.82 -2.91 -0.01 5.09 16 37 H 0.30 13.49 8.30 -92.71 -0.77 12.73 16 Total: -1.00 -60.42 305.62 3.94 -56.48 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 1.04 Total: 21.66 kcal Atomic # 6 Polarization: -50.53 SS G_CDS: 3.56 Total: -46.97 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -1.29 Total: -63.89 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -1.05 Total: -9.12 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 1.68 Total: 41.84 kcal Total: -60.42 3.94 -56.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239805367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.930 kcal (2) G-P(sol) polarization free energy of solvation -60.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds