Wall clock time and date at job start Tue Mar 31 2020 05:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36257 * 119.93870 * 2 1 4 4 C 1.40940 * 119.87941 * 180.25459 * 3 2 1 5 5 C 1.40981 * 120.11399 * 179.78543 * 4 3 2 6 6 H 1.07997 * 120.00197 * 204.65949 * 5 4 3 7 7 C 1.40096 * 119.99886 * 24.66312 * 5 4 3 8 8 N 1.30741 * 120.00192 * 17.95698 * 7 5 4 9 9 Si 1.86798 * 119.99680 * 197.95079 * 7 5 4 10 10 H 1.48497 * 109.47678 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46799 * 120.00374 * 9 7 5 12 12 H 1.48506 * 109.47284 * 239.99934 * 9 7 5 13 13 C 1.40967 * 119.77169 * 359.76370 * 4 3 2 14 14 C 1.36219 * 119.88418 * 0.02562 * 13 4 3 15 15 C 1.39969 * 119.94255 * 179.76311 * 2 1 3 16 16 C 1.47875 * 119.88296 * 0.02562 * 15 2 1 17 17 C 1.39760 * 119.99720 * 129.72313 * 16 15 2 18 18 C 1.37110 * 119.99778 * 179.97438 * 17 16 15 19 19 C 1.39759 * 120.00128 * 0.02562 * 18 17 16 20 20 C 1.47716 * 120.00361 * 179.97438 * 19 18 17 21 21 N 1.34777 * 120.00381 * 179.97438 * 20 19 18 22 22 O 1.21576 * 119.99522 * 0.02562 * 20 19 18 23 23 C 1.39762 * 119.99964 * 0.26778 * 19 18 17 24 24 C 1.37123 * 119.99476 * 359.44812 * 23 19 18 25 25 H 1.08995 * 109.46610 * 270.23612 * 1 2 3 26 26 H 1.09000 * 109.46876 * 30.23766 * 1 2 3 27 27 H 1.08995 * 109.46645 * 150.23722 * 1 2 3 28 28 H 1.07995 * 120.06424 * 0.02562 * 3 2 1 29 29 H 0.96996 * 120.00463 * 180.02562 * 8 7 5 30 30 H 1.08001 * 120.05964 * 179.97438 * 13 4 3 31 31 H 1.07997 * 119.94642 * 179.97438 * 14 13 4 32 32 H 1.07999 * 119.99620 * 359.97438 * 17 16 15 33 33 H 1.08007 * 119.99736 * 179.97438 * 18 17 16 34 34 H 0.97003 * 119.99909 * 0.02562 * 21 20 19 35 35 H 0.96997 * 120.00197 * 179.72077 * 21 20 19 36 36 H 1.08000 * 120.00550 * 179.72270 * 23 19 18 37 37 H 1.07996 * 119.99907 * 180.27221 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1807 0.0000 4 6 3.5964 1.1793 -0.0054 5 6 4.3050 2.3981 -0.0100 6 1 5.3097 2.4371 -0.4042 7 6 3.7058 3.5586 0.4968 8 7 2.6623 3.4673 1.2792 9 14 4.3980 5.2364 0.0549 10 1 5.5719 5.0679 -0.8388 11 1 3.3565 6.0335 -0.6417 12 1 4.8152 5.9416 1.2934 13 6 4.2951 -0.0450 -0.0058 14 6 3.6058 -1.2199 -0.0014 15 6 2.2057 -1.2129 0.0050 16 6 1.4624 -2.4912 0.0097 17 6 1.7803 -3.4877 -0.9172 18 6 1.0915 -4.6732 -0.9125 19 6 0.0711 -4.8850 0.0188 20 6 -0.6713 -6.1619 0.0236 21 7 -1.6549 -6.3663 0.9221 22 8 -0.3945 -7.0290 -0.7825 23 6 -0.2508 -3.8861 0.9418 24 6 0.4420 -2.7027 0.9408 25 1 -0.3632 0.0042 1.0276 26 1 -0.3633 0.8879 -0.5175 27 1 -0.3632 -0.8921 -0.5101 28 1 1.6471 2.1160 0.0004 29 1 2.2472 4.2708 1.6298 30 1 5.3751 -0.0516 -0.0104 31 1 4.1401 -2.1585 -0.0021 32 1 2.5684 -3.3239 -1.6372 33 1 1.3368 -5.4432 -1.6291 34 1 -1.8755 -5.6747 1.5654 35 1 -2.1452 -7.2033 0.9225 36 1 -1.0423 -4.0478 1.6586 37 1 0.1962 -1.9325 1.6569 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239871264.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:56 Heat of formation + Delta-G solvation = -12.289362 kcal Electronic energy + Delta-G solvation = -20396.571843 eV Core-core repulsion = 17295.273463 eV Total energy + Delta-G solvation = -3101.298380 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.93094 -38.59701 -37.19361 -34.19452 -33.77860 -32.04279 -31.20229 -30.49739 -28.88159 -25.99068 -25.68535 -23.20068 -22.23624 -21.01254 -20.16941 -19.59237 -18.09830 -17.24559 -16.73684 -15.83771 -15.30923 -14.92326 -14.66167 -14.38307 -13.96731 -13.80441 -13.60488 -13.28704 -12.88923 -12.65153 -12.29086 -12.15353 -11.90209 -11.58300 -11.44030 -11.20371 -11.01665 -10.88632 -10.63561 -10.33861 -10.00871 -9.77278 -9.71468 -9.58550 -9.37216 -8.73893 -8.47033 -7.50730 -7.29174 -6.95530 -4.50262 1.04063 1.73736 2.54009 2.94029 2.97033 2.98813 3.02700 3.21245 3.54005 3.78348 4.16943 4.46214 4.94022 5.02177 5.23311 5.48248 5.52866 5.71203 5.82042 5.94897 6.00917 6.16147 6.27405 6.28462 6.39613 6.53002 6.54527 6.67242 6.73405 6.79358 6.86036 6.95827 7.15488 7.22332 7.24740 7.31766 7.48551 7.76749 7.90266 7.98747 8.12569 8.25958 8.45423 8.69332 8.80801 9.95639 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.044269 B = 0.003420 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.343185 B = 8186.151298 C = 8597.457169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.044 4.044 3 C -0.169 4.169 4 C 0.120 3.880 5 C -0.448 4.448 6 H 0.082 0.918 7 C 0.075 3.925 8 N -0.778 5.778 9 Si 0.910 3.090 10 H -0.258 1.258 11 H -0.270 1.270 12 H -0.273 1.273 13 C -0.233 4.233 14 C -0.058 4.058 15 C -0.217 4.217 16 C 0.055 3.945 17 C -0.142 4.142 18 C -0.052 4.052 19 C -0.181 4.181 20 C 0.568 3.432 21 N -0.856 5.856 22 O -0.553 6.553 23 C -0.081 4.081 24 C -0.138 4.138 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.120 0.880 29 H 0.284 0.716 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.400 0.600 35 H 0.400 0.600 36 H 0.117 0.883 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.702 -7.308 1.369 10.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.044 4.044 3 C -0.188 4.188 4 C 0.118 3.882 5 C -0.476 4.476 6 H 0.100 0.900 7 C -0.145 4.145 8 N -0.402 5.402 9 Si 0.734 3.266 10 H -0.182 1.182 11 H -0.195 1.195 12 H -0.198 1.198 13 C -0.252 4.252 14 C -0.077 4.077 15 C -0.218 4.218 16 C 0.055 3.945 17 C -0.160 4.160 18 C -0.070 4.070 19 C -0.185 4.185 20 C 0.357 3.643 21 N -0.420 5.420 22 O -0.432 6.432 23 C -0.100 4.100 24 C -0.156 4.156 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.137 0.863 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.230 0.770 35 H 0.230 0.770 36 H 0.134 0.866 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.552 -7.590 0.940 10.071 hybrid contribution -0.057 0.853 0.373 0.932 sum -6.609 -6.737 1.313 9.528 Atomic orbital electron populations 1.20792 0.93771 1.00983 1.00752 1.19221 0.93733 0.92705 0.98772 1.20862 0.94250 0.96140 1.07591 1.17704 0.92073 0.92128 0.86341 1.19732 1.01386 0.92379 1.34152 0.89999 1.26024 0.94161 1.01819 0.92537 1.69792 1.17728 1.31795 1.20840 0.86229 0.80199 0.80740 0.79481 1.18185 1.19490 1.19787 1.20660 0.97839 0.92521 1.14192 1.20297 0.92528 0.96612 0.98214 1.17911 0.92430 0.89865 1.21583 1.19244 0.91670 0.92896 0.90698 1.21218 1.01425 0.93446 0.99961 1.20971 0.93080 0.96777 0.96222 1.19630 1.01989 0.94739 1.02098 1.18399 0.79117 0.87078 0.79750 1.43773 1.38788 1.22022 1.37430 1.90776 1.67240 1.45687 1.39454 1.20956 0.98605 0.93336 0.97068 1.21209 0.97481 0.97114 0.99756 0.92483 0.92871 0.92767 0.86259 0.90528 0.88761 0.89117 0.85635 0.85489 0.77021 0.76961 0.86550 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 8.43 36.01 0.30 -1.61 16 2 C -0.04 -0.96 5.83 -104.69 -0.61 -1.57 16 3 C -0.17 -4.12 8.26 -39.27 -0.32 -4.45 16 4 C 0.12 3.03 5.57 -106.80 -0.60 2.44 16 5 C -0.45 -11.20 9.03 -37.85 -0.34 -11.54 16 6 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 7 C 0.07 1.75 5.13 -17.32 -0.09 1.67 16 8 N -0.78 -18.79 10.96 55.56 0.61 -18.18 16 9 Si 0.91 17.49 29.60 -169.99 -5.03 12.46 16 10 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 11 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 12 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 13 C -0.23 -5.43 9.73 -39.28 -0.38 -5.81 16 14 C -0.06 -1.25 9.42 -39.64 -0.37 -1.62 16 15 C -0.22 -4.53 5.49 -104.64 -0.57 -5.10 16 16 C 0.06 0.99 4.71 -104.82 -0.49 0.49 16 17 C -0.14 -2.35 9.46 -39.42 -0.37 -2.72 16 18 C -0.05 -0.80 9.55 -39.42 -0.38 -1.18 16 19 C -0.18 -2.64 5.88 -104.89 -0.62 -3.26 16 20 C 0.57 7.96 8.04 -12.39 -0.10 7.87 16 21 N -0.86 -7.88 8.82 30.50 0.27 -7.61 16 22 O -0.55 -9.70 17.17 5.30 0.09 -9.61 16 23 C -0.08 -1.07 9.50 -39.42 -0.37 -1.44 16 24 C -0.14 -2.15 7.85 -39.42 -0.31 -2.46 16 25 H 0.06 0.95 7.48 -51.93 -0.39 0.56 16 26 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 27 H 0.05 0.91 6.44 -51.93 -0.33 0.58 16 28 H 0.12 3.00 6.16 -52.49 -0.32 2.68 16 29 H 0.28 6.17 8.29 -40.82 -0.34 5.84 16 30 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.09 1.74 8.03 -52.49 -0.42 1.32 16 32 H 0.13 1.98 8.03 -52.49 -0.42 1.56 16 33 H 0.13 1.90 7.64 -52.48 -0.40 1.50 16 34 H 0.40 2.66 6.84 -40.82 -0.28 2.38 16 35 H 0.40 2.99 8.93 -40.82 -0.36 2.63 16 36 H 0.12 1.09 6.38 -52.49 -0.34 0.75 16 37 H 0.13 1.93 6.84 -52.49 -0.36 1.57 16 LS Contribution 314.89 15.07 4.75 4.75 Total: -1.00 -28.49 314.89 -8.97 -37.45 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.02 Total: 11.04 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: -5.63 Total: -30.29 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.88 Total: -25.79 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.49 -8.97 -37.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239871264.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.164 kcal (2) G-P(sol) polarization free energy of solvation -28.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds