Wall clock time and date at job start Tue Mar 31 2020 05:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36257 * 119.93870 * 2 1 4 4 C 1.40940 * 119.87941 * 180.25459 * 3 2 1 5 5 C 1.40981 * 120.11399 * 179.78543 * 4 3 2 6 6 H 1.07997 * 120.00197 * 204.65949 * 5 4 3 7 7 C 1.40096 * 119.99886 * 24.66312 * 5 4 3 8 8 N 1.30741 * 120.00192 * 17.95698 * 7 5 4 9 9 Si 1.86798 * 119.99680 * 197.95079 * 7 5 4 10 10 H 1.48497 * 109.47678 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46799 * 120.00374 * 9 7 5 12 12 H 1.48506 * 109.47284 * 239.99934 * 9 7 5 13 13 C 1.40967 * 119.77169 * 359.76370 * 4 3 2 14 14 C 1.36219 * 119.88418 * 0.02562 * 13 4 3 15 15 C 1.39969 * 119.94255 * 179.76311 * 2 1 3 16 16 C 1.47875 * 119.88296 * 0.02562 * 15 2 1 17 17 C 1.39760 * 119.99720 * 129.72313 * 16 15 2 18 18 C 1.37110 * 119.99778 * 179.97438 * 17 16 15 19 19 C 1.39759 * 120.00128 * 0.02562 * 18 17 16 20 20 C 1.47716 * 120.00361 * 179.97438 * 19 18 17 21 21 N 1.34777 * 120.00381 * 179.97438 * 20 19 18 22 22 O 1.21576 * 119.99522 * 0.02562 * 20 19 18 23 23 C 1.39762 * 119.99964 * 0.26778 * 19 18 17 24 24 C 1.37123 * 119.99476 * 359.44812 * 23 19 18 25 25 H 1.08995 * 109.46610 * 270.23612 * 1 2 3 26 26 H 1.09000 * 109.46876 * 30.23766 * 1 2 3 27 27 H 1.08995 * 109.46645 * 150.23722 * 1 2 3 28 28 H 1.07995 * 120.06424 * 0.02562 * 3 2 1 29 29 H 0.96996 * 120.00463 * 180.02562 * 8 7 5 30 30 H 1.08001 * 120.05964 * 179.97438 * 13 4 3 31 31 H 1.07997 * 119.94642 * 179.97438 * 14 13 4 32 32 H 1.07999 * 119.99620 * 359.97438 * 17 16 15 33 33 H 1.08007 * 119.99736 * 179.97438 * 18 17 16 34 34 H 0.97003 * 119.99909 * 0.02562 * 21 20 19 35 35 H 0.96997 * 120.00197 * 179.72077 * 21 20 19 36 36 H 1.08000 * 120.00550 * 179.72270 * 23 19 18 37 37 H 1.07996 * 119.99907 * 180.27221 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1807 0.0000 4 6 3.5964 1.1793 -0.0054 5 6 4.3050 2.3981 -0.0100 6 1 5.3097 2.4371 -0.4042 7 6 3.7058 3.5586 0.4968 8 7 2.6623 3.4673 1.2792 9 14 4.3980 5.2364 0.0549 10 1 5.5719 5.0679 -0.8388 11 1 3.3565 6.0335 -0.6417 12 1 4.8152 5.9416 1.2934 13 6 4.2951 -0.0450 -0.0058 14 6 3.6058 -1.2199 -0.0014 15 6 2.2057 -1.2129 0.0050 16 6 1.4624 -2.4912 0.0097 17 6 1.7803 -3.4877 -0.9172 18 6 1.0915 -4.6732 -0.9125 19 6 0.0711 -4.8850 0.0188 20 6 -0.6713 -6.1619 0.0236 21 7 -1.6549 -6.3663 0.9221 22 8 -0.3945 -7.0290 -0.7825 23 6 -0.2508 -3.8861 0.9418 24 6 0.4420 -2.7027 0.9408 25 1 -0.3632 0.0042 1.0276 26 1 -0.3633 0.8879 -0.5175 27 1 -0.3632 -0.8921 -0.5101 28 1 1.6471 2.1160 0.0004 29 1 2.2472 4.2708 1.6298 30 1 5.3751 -0.0516 -0.0104 31 1 4.1401 -2.1585 -0.0021 32 1 2.5684 -3.3239 -1.6372 33 1 1.3368 -5.4432 -1.6291 34 1 -1.8755 -5.6747 1.5654 35 1 -2.1452 -7.2033 0.9225 36 1 -1.0423 -4.0478 1.6586 37 1 0.1962 -1.9325 1.6569 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239871264.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:55 Heat of formation + Delta-G solvation = -28.458596 kcal Electronic energy + Delta-G solvation = -20397.272993 eV Core-core repulsion = 17295.273463 eV Total energy + Delta-G solvation = -3101.999531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.12813 -40.03584 -38.64486 -35.84540 -34.83524 -33.65703 -32.64468 -31.76410 -30.45075 -27.62230 -27.25573 -24.60012 -23.48659 -22.51120 -21.58159 -21.11563 -19.15153 -19.00432 -17.75889 -17.34829 -16.91311 -16.09334 -15.83702 -15.72256 -15.53596 -15.28348 -14.98109 -14.60681 -14.39621 -14.06227 -13.76351 -13.64595 -13.43369 -13.15340 -12.94912 -12.77008 -12.60089 -12.38085 -12.09654 -11.82447 -11.44826 -11.31748 -11.11308 -11.06410 -10.70360 -9.93787 -9.87913 -9.25907 -8.96841 -8.67525 -6.34203 -0.20813 0.53289 0.92428 1.18818 1.38359 1.47495 1.53061 1.93537 2.18713 2.60231 2.66349 3.00486 3.68454 3.89041 3.96734 4.07005 4.16541 4.37974 4.40732 4.50229 4.61318 4.70694 4.88415 4.90445 4.99938 5.08607 5.14132 5.17212 5.31091 5.36201 5.42433 5.49890 5.68454 5.75411 5.87699 5.93368 6.10236 6.11202 6.24961 6.35849 6.44834 6.66481 6.89009 7.01843 7.32220 8.26070 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.044269 B = 0.003420 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.343185 B = 8186.151298 C = 8597.457169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.053 4.053 3 C -0.192 4.192 4 C 0.089 3.911 5 C -0.491 4.491 6 H 0.076 0.924 7 C 0.038 3.962 8 N -0.811 5.811 9 Si 0.981 3.019 10 H -0.260 1.260 11 H -0.263 1.263 12 H -0.264 1.264 13 C -0.252 4.252 14 C -0.066 4.066 15 C -0.205 4.205 16 C 0.028 3.972 17 C -0.142 4.142 18 C -0.061 4.061 19 C -0.176 4.176 20 C 0.567 3.433 21 N -0.829 5.829 22 O -0.593 6.593 23 C -0.064 4.064 24 C -0.136 4.136 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.291 0.709 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.417 0.583 35 H 0.413 0.587 36 H 0.164 0.836 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.848 -8.733 2.246 12.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.053 4.053 3 C -0.212 4.212 4 C 0.086 3.914 5 C -0.519 4.519 6 H 0.094 0.906 7 C -0.179 4.179 8 N -0.435 5.435 9 Si 0.802 3.198 10 H -0.183 1.183 11 H -0.187 1.187 12 H -0.189 1.189 13 C -0.271 4.271 14 C -0.084 4.084 15 C -0.206 4.206 16 C 0.027 3.973 17 C -0.160 4.160 18 C -0.079 4.079 19 C -0.179 4.179 20 C 0.354 3.646 21 N -0.393 5.393 22 O -0.475 6.475 23 C -0.082 4.082 24 C -0.154 4.154 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.130 0.870 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.249 0.751 35 H 0.245 0.755 36 H 0.181 0.819 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.736 -9.028 1.856 12.699 hybrid contribution 0.460 0.967 0.131 1.078 sum -8.276 -8.062 1.986 11.723 Atomic orbital electron populations 1.20772 0.90974 1.01745 1.02023 1.19642 0.95952 0.92167 0.97533 1.20843 0.94150 0.96616 1.09565 1.18041 0.92916 0.92976 0.87455 1.19905 1.01751 0.93721 1.36562 0.90621 1.26782 0.94381 1.04934 0.91822 1.69826 1.18954 1.33076 1.21674 0.85173 0.79383 0.76017 0.79275 1.18333 1.18720 1.18892 1.20827 0.98172 0.92949 1.15152 1.20581 0.93313 0.96766 0.97753 1.18261 0.92447 0.91218 1.18694 1.19145 0.93268 0.91962 0.92898 1.21191 1.01540 0.93484 0.99825 1.21054 0.93571 0.96428 0.96897 1.19883 1.01156 0.95368 1.01462 1.18340 0.79811 0.86314 0.80103 1.43542 1.36860 1.22985 1.35963 1.90774 1.68652 1.46729 1.41348 1.21303 0.98638 0.91443 0.96818 1.21309 0.96682 0.98254 0.99157 0.90793 0.92781 0.91263 0.87836 0.89796 0.88621 0.87037 0.85745 0.85293 0.75093 0.75494 0.81885 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.41 8.43 71.24 0.60 -2.81 16 2 C -0.05 -2.30 5.83 -19.91 -0.12 -2.42 16 3 C -0.19 -9.75 8.26 22.47 0.19 -9.57 16 4 C 0.09 4.70 5.57 -21.28 -0.12 4.58 16 5 C -0.49 -25.92 9.03 23.39 0.21 -25.71 16 6 H 0.08 3.89 7.91 -2.91 -0.02 3.86 16 7 C 0.04 1.83 5.13 85.31 0.44 2.27 16 8 N -0.81 -40.57 10.96 21.85 0.24 -40.33 16 9 Si 0.98 36.83 29.60 68.60 2.03 38.86 16 10 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 11 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 12 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 13 C -0.25 -12.26 9.73 22.47 0.22 -12.04 16 14 C -0.07 -2.87 9.42 22.23 0.21 -2.66 16 15 C -0.21 -8.50 5.49 -19.88 -0.11 -8.61 16 16 C 0.03 0.94 4.71 -19.99 -0.09 0.84 16 17 C -0.14 -4.49 9.46 22.37 0.21 -4.28 16 18 C -0.06 -1.76 9.55 22.37 0.21 -1.55 16 19 C -0.18 -4.49 5.88 -20.04 -0.12 -4.60 16 20 C 0.57 13.88 8.04 86.75 0.70 14.58 16 21 N -0.83 -11.42 8.82 -175.68 -1.55 -12.97 16 22 O -0.59 -19.48 17.17 -3.96 -0.07 -19.55 16 23 C -0.06 -1.38 9.50 22.38 0.21 -1.17 16 24 C -0.14 -3.79 7.85 22.37 0.18 -3.61 16 25 H 0.07 2.30 7.48 -2.39 -0.02 2.28 16 26 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 27 H 0.07 2.16 6.44 -2.39 -0.02 2.15 16 28 H 0.10 5.48 6.16 -2.91 -0.02 5.46 16 29 H 0.29 13.02 8.29 -92.71 -0.77 12.25 16 30 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.11 4.26 8.03 -2.91 -0.02 4.24 16 32 H 0.12 3.86 8.03 -2.91 -0.02 3.83 16 33 H 0.13 3.68 7.64 -2.91 -0.02 3.66 16 34 H 0.42 3.14 6.84 -92.71 -0.63 2.51 16 35 H 0.41 4.38 8.93 -92.71 -0.83 3.55 16 36 H 0.16 1.98 6.38 -2.91 -0.02 1.96 16 37 H 0.13 3.56 6.84 -2.91 -0.02 3.54 16 Total: -1.00 -64.79 314.89 3.14 -61.66 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.33 Total: 29.08 kcal Atomic # 6 Polarization: -59.57 SS G_CDS: 2.82 Total: -56.75 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -1.31 Total: -53.30 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.07 Total: -19.55 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Total: -64.79 3.14 -61.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239871264.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.200 kcal (2) G-P(sol) polarization free energy of solvation -64.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds