Wall clock time and date at job start Tue Mar 31 2020 05:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36245 * 120.06140 * 2 1 4 4 C 1.39961 * 120.12302 * 180.02562 * 3 2 1 5 5 C 1.47880 * 119.88756 * 179.97438 * 4 3 2 6 6 C 1.39748 * 119.99607 * 359.72364 * 5 4 3 7 7 C 1.37123 * 119.99860 * 179.72270 * 6 5 4 8 8 C 1.39765 * 119.99544 * 0.55424 * 7 6 5 9 9 C 1.47718 * 119.99927 * 179.74414 * 8 7 6 10 10 N 1.34778 * 119.99854 * 359.97438 * 9 8 7 11 11 O 1.21573 * 120.00086 * 179.97438 * 9 8 7 12 12 C 1.39762 * 120.00117 * 359.71919 * 8 7 6 13 13 C 1.37114 * 119.99576 * 0.02562 * 12 8 7 14 14 C 1.40006 * 120.22842 * 359.97438 * 4 3 2 15 15 C 1.36217 * 120.11863 * 359.73564 * 14 4 3 16 16 C 1.40932 * 120.05891 * 180.02562 * 2 1 3 17 17 C 1.40987 * 120.11692 * 359.95084 * 16 2 1 18 18 H 1.08003 * 119.99877 * 334.49859 * 17 16 2 19 19 C 1.40091 * 120.00342 * 154.49569 * 17 16 2 20 20 N 1.30745 * 119.99536 * 334.61141 * 19 17 16 21 21 Si 1.86797 * 120.00084 * 154.60590 * 19 17 16 22 22 H 1.48501 * 109.47124 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.47336 * 300.00331 * 21 19 17 24 24 H 1.48504 * 109.47146 * 60.00197 * 21 19 17 25 25 H 1.09002 * 109.47370 * 269.97304 * 1 2 3 26 26 H 1.08991 * 109.47454 * 29.97648 * 1 2 3 27 27 H 1.09003 * 109.47132 * 149.98313 * 1 2 3 28 28 H 1.08008 * 119.93561 * 0.02562 * 3 2 1 29 29 H 1.07995 * 120.00382 * 0.02562 * 6 5 4 30 30 H 1.07996 * 120.00043 * 180.24697 * 7 6 5 31 31 H 0.96999 * 120.00436 * 359.97438 * 10 9 8 32 32 H 0.97000 * 119.99749 * 180.02562 * 10 9 8 33 33 H 1.07999 * 120.00459 * 179.97438 * 12 8 7 34 34 H 1.08002 * 120.00010 * 180.02562 * 13 12 8 35 35 H 1.08004 * 119.94633 * 180.02562 * 14 4 3 36 36 H 1.07998 * 120.06499 * 180.25592 * 15 14 4 37 37 H 0.96998 * 120.00343 * 354.16155 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1895 1.1792 0.0000 4 6 3.5891 1.1807 -0.0005 5 6 4.3246 2.4636 -0.0011 6 6 3.6221 3.6717 -0.0069 7 6 4.3040 4.8613 -0.0017 8 6 5.7017 4.8655 -0.0023 9 6 6.4363 6.1471 -0.0024 10 7 5.7589 7.3122 -0.0024 11 8 7.6521 6.1508 -0.0024 12 6 6.4042 3.6573 -0.0022 13 6 5.7221 2.4678 -0.0022 14 6 4.2952 -0.0282 -0.0005 15 6 3.6226 -1.2127 0.0054 16 6 2.2129 -1.2198 -0.0005 17 6 1.5117 -2.4429 0.0000 18 1 0.5110 -2.4916 0.4034 19 6 2.1129 -3.5952 -0.5229 20 7 3.0526 -3.4900 -1.4258 21 14 1.5719 -5.2820 0.0700 22 1 2.3559 -6.3288 -0.6333 23 1 1.8019 -5.3897 1.5331 24 1 0.1272 -5.4684 -0.2190 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3633 -0.8899 -0.5141 28 1 1.6494 2.1145 0.0004 29 1 2.5422 3.6684 -0.0106 30 1 3.7611 5.7949 -0.0022 31 1 4.7889 7.3093 -0.0028 32 1 6.2413 8.1537 -0.0029 33 1 7.4841 3.6605 -0.0031 34 1 6.2649 1.5341 -0.0017 35 1 5.3753 -0.0218 -0.0005 36 1 4.1682 -2.1447 0.0096 37 1 3.2749 -2.6212 -1.7954 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239872010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:30 Heat of formation + Delta-G solvation = -18.521059 kcal Electronic energy + Delta-G solvation = -20247.823192 eV Core-core repulsion = 17146.254586 eV Total energy + Delta-G solvation = -3101.568607 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.87422 -38.65474 -37.45117 -34.38316 -33.77750 -32.32183 -31.09681 -30.43510 -28.72255 -26.43615 -25.33582 -23.28604 -22.42393 -21.09947 -20.15721 -19.59555 -18.13043 -17.98739 -16.72334 -15.72275 -15.18691 -14.85498 -14.61090 -14.51202 -14.18876 -13.70033 -13.45730 -13.33199 -12.97146 -12.78331 -12.37255 -12.29041 -11.97157 -11.67619 -11.37641 -11.32164 -10.89456 -10.77357 -10.65656 -10.55133 -9.93940 -9.74430 -9.72796 -9.61430 -9.32376 -8.78381 -8.73882 -7.84867 -7.52169 -7.24671 -4.65378 0.97366 1.76463 2.46498 2.74470 2.98151 3.02905 3.20493 3.31507 3.58030 3.79846 4.12828 4.49996 4.97872 5.00409 5.22597 5.27269 5.49464 5.65799 5.80002 5.89432 5.92780 6.14186 6.21381 6.34914 6.41358 6.45196 6.55163 6.64679 6.67234 6.76592 6.81903 6.88890 7.00886 7.16171 7.23782 7.35278 7.47978 7.52814 7.64746 7.77168 7.90456 8.05442 8.30353 8.46083 8.58331 9.71871 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037659 B = 0.003399 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.336139 B = 8234.924288 C = 8869.110096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.204 4.204 3 C -0.045 4.045 4 C -0.227 4.227 5 C 0.061 3.939 6 C -0.162 4.162 7 C -0.069 4.069 8 C -0.199 4.199 9 C 0.569 3.431 10 N -0.858 5.858 11 O -0.555 6.555 12 C -0.041 4.041 13 C -0.162 4.162 14 C -0.052 4.052 15 C -0.226 4.226 16 C 0.105 3.895 17 C -0.485 4.485 18 H 0.085 0.915 19 C 0.034 3.966 20 N -0.772 5.772 21 Si 1.065 2.935 22 H -0.271 1.271 23 H -0.271 1.271 24 H -0.273 1.273 25 H 0.043 0.957 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.399 0.601 32 H 0.399 0.601 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.643 9.666 1.746 9.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.205 4.205 3 C -0.064 4.064 4 C -0.228 4.228 5 C 0.061 3.939 6 C -0.180 4.180 7 C -0.088 4.088 8 C -0.202 4.202 9 C 0.358 3.642 10 N -0.421 5.421 11 O -0.434 6.434 12 C -0.060 4.060 13 C -0.180 4.180 14 C -0.070 4.070 15 C -0.245 4.245 16 C 0.102 3.898 17 C -0.511 4.511 18 H 0.103 0.897 19 C -0.191 4.191 20 N -0.393 5.393 21 Si 0.888 3.112 22 H -0.195 1.195 23 H -0.197 1.197 24 H -0.198 1.198 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.142 0.858 30 H 0.133 0.867 31 H 0.229 0.771 32 H 0.230 0.770 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.519 7.853 1.537 8.019 hybrid contribution -0.587 2.122 0.124 2.205 sum -1.106 9.975 1.661 10.172 Atomic orbital electron populations 1.20414 0.93138 1.00765 0.99938 1.19395 0.94642 0.92806 1.13650 1.20327 0.92796 0.96207 0.97022 1.17990 0.92547 0.90512 1.21765 1.19207 0.92537 0.93043 0.89148 1.20967 0.99946 0.91545 1.05573 1.20886 0.92744 0.97785 0.97371 1.19536 0.93500 0.92819 1.14351 1.18391 0.86918 0.84390 0.74513 1.43768 1.11182 1.08270 1.78914 1.90768 1.13854 1.87932 1.50847 1.20922 0.99917 0.90986 0.94176 1.21061 0.93834 0.97767 1.05363 1.20500 0.97555 0.92258 0.96691 1.20855 0.94334 0.96752 1.12513 1.17671 0.91732 0.92331 0.88099 1.20840 1.03211 0.93704 1.33374 0.89663 1.27258 0.92699 1.05939 0.93165 1.70425 1.21093 1.32148 1.15652 0.83618 0.77136 0.73055 0.77422 1.19541 1.19655 1.19783 0.93776 0.94091 0.92038 0.88622 0.85836 0.86705 0.77115 0.77040 0.85598 0.85668 0.88569 0.87453 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.39 36.00 0.34 -1.29 16 2 C -0.20 -4.51 5.90 -104.32 -0.62 -5.12 16 3 C -0.05 -0.94 8.99 -39.65 -0.36 -1.29 16 4 C -0.23 -4.73 5.90 -104.64 -0.62 -5.35 16 5 C 0.06 1.12 5.88 -104.82 -0.62 0.50 16 6 C -0.16 -2.57 9.39 -39.42 -0.37 -2.94 16 7 C -0.07 -0.94 9.50 -39.42 -0.37 -1.32 16 8 C -0.20 -3.03 5.88 -104.88 -0.62 -3.64 16 9 C 0.57 8.31 8.04 -12.39 -0.10 8.21 16 10 N -0.86 -8.26 8.82 30.50 0.27 -8.00 16 11 O -0.55 -10.08 17.17 5.30 0.09 -9.99 16 12 C -0.04 -0.67 9.56 -39.42 -0.38 -1.05 16 13 C -0.16 -2.80 9.39 -39.42 -0.37 -3.17 16 14 C -0.05 -1.12 9.35 -39.65 -0.37 -1.49 16 15 C -0.23 -5.34 7.89 -39.27 -0.31 -5.65 16 16 C 0.11 2.53 5.29 -106.80 -0.57 1.97 16 17 C -0.49 -11.55 8.05 -37.85 -0.30 -11.86 16 18 H 0.09 1.95 6.91 -52.48 -0.36 1.58 16 19 C 0.03 0.79 4.93 -17.32 -0.09 0.70 16 20 N -0.77 -18.81 12.31 55.55 0.68 -18.13 16 21 Si 1.07 19.51 30.00 -169.99 -5.10 14.41 16 22 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 23 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 24 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.06 1.19 6.76 -51.93 -0.35 0.84 16 28 H 0.10 1.72 6.16 -52.48 -0.32 1.40 16 29 H 0.12 1.79 6.16 -52.49 -0.32 1.47 16 30 H 0.12 1.11 6.38 -52.49 -0.34 0.77 16 31 H 0.40 2.80 6.84 -40.82 -0.28 2.52 16 32 H 0.40 3.14 8.93 -40.82 -0.36 2.78 16 33 H 0.13 1.98 7.64 -52.49 -0.40 1.58 16 34 H 0.13 2.06 6.16 -52.49 -0.32 1.73 16 35 H 0.10 1.88 6.16 -52.48 -0.32 1.55 16 36 H 0.11 2.61 6.50 -52.49 -0.34 2.27 16 37 H 0.30 7.63 6.70 -40.82 -0.27 7.36 16 LS Contribution 310.49 15.07 4.68 4.68 Total: -1.00 -27.91 310.49 -8.73 -36.64 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -3.64 Total: 13.16 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: -5.71 Total: -32.78 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.95 Total: -26.12 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.10 Total: 14.41 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.91 -8.73 -36.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239872010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.121 kcal (2) G-P(sol) polarization free energy of solvation -27.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds