Wall clock time and date at job start Tue Mar 31 2020 05:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36245 * 120.06140 * 2 1 4 4 C 1.39961 * 120.12302 * 180.02562 * 3 2 1 5 5 C 1.47880 * 119.88756 * 179.97438 * 4 3 2 6 6 C 1.39748 * 119.99607 * 359.72364 * 5 4 3 7 7 C 1.37123 * 119.99860 * 179.72270 * 6 5 4 8 8 C 1.39765 * 119.99544 * 0.55424 * 7 6 5 9 9 C 1.47718 * 119.99927 * 179.74414 * 8 7 6 10 10 N 1.34778 * 119.99854 * 359.97438 * 9 8 7 11 11 O 1.21573 * 120.00086 * 179.97438 * 9 8 7 12 12 C 1.39762 * 120.00117 * 359.71919 * 8 7 6 13 13 C 1.37114 * 119.99576 * 0.02562 * 12 8 7 14 14 C 1.40006 * 120.22842 * 359.97438 * 4 3 2 15 15 C 1.36217 * 120.11863 * 359.73564 * 14 4 3 16 16 C 1.40932 * 120.05891 * 180.02562 * 2 1 3 17 17 C 1.40987 * 120.11692 * 359.95084 * 16 2 1 18 18 H 1.08003 * 119.99877 * 334.49859 * 17 16 2 19 19 C 1.40091 * 120.00342 * 154.49569 * 17 16 2 20 20 N 1.30745 * 119.99536 * 334.61141 * 19 17 16 21 21 Si 1.86797 * 120.00084 * 154.60590 * 19 17 16 22 22 H 1.48501 * 109.47124 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.47336 * 300.00331 * 21 19 17 24 24 H 1.48504 * 109.47146 * 60.00197 * 21 19 17 25 25 H 1.09002 * 109.47370 * 269.97304 * 1 2 3 26 26 H 1.08991 * 109.47454 * 29.97648 * 1 2 3 27 27 H 1.09003 * 109.47132 * 149.98313 * 1 2 3 28 28 H 1.08008 * 119.93561 * 0.02562 * 3 2 1 29 29 H 1.07995 * 120.00382 * 0.02562 * 6 5 4 30 30 H 1.07996 * 120.00043 * 180.24697 * 7 6 5 31 31 H 0.96999 * 120.00436 * 359.97438 * 10 9 8 32 32 H 0.97000 * 119.99749 * 180.02562 * 10 9 8 33 33 H 1.07999 * 120.00459 * 179.97438 * 12 8 7 34 34 H 1.08002 * 120.00010 * 180.02562 * 13 12 8 35 35 H 1.08004 * 119.94633 * 180.02562 * 14 4 3 36 36 H 1.07998 * 120.06499 * 180.25592 * 15 14 4 37 37 H 0.96998 * 120.00343 * 354.16155 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1895 1.1792 0.0000 4 6 3.5891 1.1807 -0.0005 5 6 4.3246 2.4636 -0.0011 6 6 3.6221 3.6717 -0.0069 7 6 4.3040 4.8613 -0.0017 8 6 5.7017 4.8655 -0.0023 9 6 6.4363 6.1471 -0.0024 10 7 5.7589 7.3122 -0.0024 11 8 7.6521 6.1508 -0.0024 12 6 6.4042 3.6573 -0.0022 13 6 5.7221 2.4678 -0.0022 14 6 4.2952 -0.0282 -0.0005 15 6 3.6226 -1.2127 0.0054 16 6 2.2129 -1.2198 -0.0005 17 6 1.5117 -2.4429 0.0000 18 1 0.5110 -2.4916 0.4034 19 6 2.1129 -3.5952 -0.5229 20 7 3.0526 -3.4900 -1.4258 21 14 1.5719 -5.2820 0.0700 22 1 2.3559 -6.3288 -0.6333 23 1 1.8019 -5.3897 1.5331 24 1 0.1272 -5.4684 -0.2190 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3633 -0.8899 -0.5141 28 1 1.6494 2.1145 0.0004 29 1 2.5422 3.6684 -0.0106 30 1 3.7611 5.7949 -0.0022 31 1 4.7889 7.3093 -0.0028 32 1 6.2413 8.1537 -0.0029 33 1 7.4841 3.6605 -0.0031 34 1 6.2649 1.5341 -0.0017 35 1 5.3753 -0.0218 -0.0005 36 1 4.1682 -2.1447 0.0096 37 1 3.2749 -2.6212 -1.7954 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239872010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:29 Heat of formation + Delta-G solvation = -34.300841 kcal Electronic energy + Delta-G solvation = -20248.507455 eV Core-core repulsion = 17146.254586 eV Total energy + Delta-G solvation = -3102.252870 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.12818 -40.15131 -38.86411 -36.00343 -34.88957 -33.84690 -32.57241 -31.77176 -30.26293 -28.03080 -26.87717 -24.72095 -23.78920 -22.53103 -21.60940 -21.06368 -19.69849 -19.17966 -17.81402 -17.16420 -16.64394 -16.40673 -15.88335 -15.79371 -15.60495 -15.10819 -14.88548 -14.68470 -14.51888 -14.27467 -13.88125 -13.71287 -13.51051 -13.22057 -12.84411 -12.83748 -12.44087 -12.21691 -12.09055 -11.97296 -11.35491 -11.23314 -11.15918 -10.96748 -10.72984 -10.28620 -9.98762 -9.55190 -9.23494 -8.86975 -6.42286 -0.36378 0.50318 0.91997 1.00618 1.50632 1.59287 1.78621 1.97396 2.29496 2.58829 2.61301 3.03504 3.57271 3.82021 3.86182 4.02487 4.11008 4.25281 4.32977 4.46002 4.53162 4.61076 4.79811 4.93073 4.97952 5.02960 5.07993 5.18486 5.23989 5.32956 5.39392 5.44484 5.53951 5.72320 5.78225 5.87700 5.91767 6.04299 6.12434 6.20018 6.34735 6.43596 6.74401 6.88684 7.30920 7.94437 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037659 B = 0.003399 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.336139 B = 8234.924288 C = 8869.110096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.218 4.218 3 C -0.054 4.054 4 C -0.216 4.216 5 C 0.029 3.971 6 C -0.155 4.155 7 C -0.055 4.055 8 C -0.190 4.190 9 C 0.567 3.433 10 N -0.829 5.829 11 O -0.595 6.595 12 C -0.056 4.056 13 C -0.164 4.164 14 C -0.067 4.067 15 C -0.246 4.246 16 C 0.077 3.923 17 C -0.524 4.524 18 H 0.086 0.914 19 C 0.002 3.998 20 N -0.804 5.804 21 Si 1.114 2.886 22 H -0.274 1.274 23 H -0.264 1.264 24 H -0.253 1.253 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.130 0.870 29 H 0.144 0.856 30 H 0.166 0.834 31 H 0.417 0.583 32 H 0.413 0.587 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.851 13.243 2.282 13.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.219 4.219 3 C -0.072 4.072 4 C -0.217 4.217 5 C 0.029 3.971 6 C -0.172 4.172 7 C -0.074 4.074 8 C -0.193 4.193 9 C 0.355 3.645 10 N -0.393 5.393 11 O -0.478 6.478 12 C -0.075 4.075 13 C -0.182 4.182 14 C -0.085 4.085 15 C -0.265 4.265 16 C 0.074 3.926 17 C -0.550 4.550 18 H 0.104 0.896 19 C -0.216 4.216 20 N -0.426 5.426 21 Si 0.930 3.070 22 H -0.199 1.199 23 H -0.189 1.189 24 H -0.177 1.177 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.147 0.853 29 H 0.161 0.839 30 H 0.184 0.816 31 H 0.249 0.751 32 H 0.245 0.755 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.771 11.489 2.076 11.808 hybrid contribution -0.028 1.534 -0.013 1.535 sum -1.799 13.023 2.063 13.307 Atomic orbital electron populations 1.20398 0.91019 1.01442 1.00856 1.19854 0.96493 0.92609 1.12916 1.20670 0.92842 0.97109 0.96589 1.18359 0.93139 0.91266 1.18960 1.19240 0.92875 0.93006 0.91970 1.21245 1.01016 0.91078 1.03904 1.21309 0.91940 0.99153 0.94966 1.19848 0.94529 0.92839 1.12109 1.18332 0.86372 0.85271 0.74538 1.43517 1.12132 1.07341 1.76325 1.90768 1.15620 1.88484 1.52901 1.21019 1.00208 0.91370 0.94886 1.21106 0.93808 0.98222 1.05042 1.20720 0.98397 0.92370 0.97056 1.20819 0.94750 0.96697 1.14237 1.18016 0.92054 0.93646 0.88852 1.20923 1.03729 0.94510 1.35872 0.89602 1.28519 0.91884 1.09087 0.92114 1.70534 1.23526 1.30823 1.17743 0.83041 0.77718 0.69026 0.77165 1.19875 1.18867 1.17679 0.92604 0.91461 0.93246 0.85265 0.83868 0.81647 0.75076 0.75506 0.85613 0.86017 0.87406 0.89513 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.97 9.39 71.24 0.67 -2.30 16 2 C -0.22 -9.64 5.90 -19.67 -0.12 -9.75 16 3 C -0.05 -2.17 8.99 22.22 0.20 -1.97 16 4 C -0.22 -8.89 5.90 -19.88 -0.12 -9.01 16 5 C 0.03 1.02 5.88 -19.99 -0.12 0.91 16 6 C -0.15 -4.23 9.39 22.37 0.21 -4.02 16 7 C -0.06 -1.22 9.50 22.38 0.21 -1.00 16 8 C -0.19 -5.10 5.88 -20.03 -0.12 -5.22 16 9 C 0.57 14.50 8.04 86.75 0.70 15.19 16 10 N -0.83 -11.84 8.82 -175.68 -1.55 -13.39 16 11 O -0.60 -20.33 17.17 -3.94 -0.07 -20.40 16 12 C -0.06 -1.73 9.56 22.37 0.21 -1.52 16 13 C -0.16 -5.50 9.39 22.37 0.21 -5.29 16 14 C -0.07 -3.03 9.35 22.23 0.21 -2.82 16 15 C -0.25 -12.37 7.89 22.47 0.18 -12.19 16 16 C 0.08 3.90 5.29 -21.28 -0.11 3.78 16 17 C -0.52 -26.20 8.05 23.39 0.19 -26.01 16 18 H 0.09 4.10 6.91 -2.91 -0.02 4.08 16 19 C 0.00 0.10 4.93 85.30 0.42 0.52 16 20 N -0.80 -41.87 12.31 21.85 0.27 -41.61 16 21 Si 1.11 40.68 30.00 68.60 2.06 42.74 16 22 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 24 H -0.25 -8.32 7.11 99.48 0.71 -7.62 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.07 2.07 8.08 -2.39 -0.02 2.05 16 27 H 0.05 1.92 6.76 -2.39 -0.02 1.90 16 28 H 0.13 4.18 6.16 -2.91 -0.02 4.16 16 29 H 0.14 3.37 6.16 -2.91 -0.02 3.35 16 30 H 0.17 1.95 6.38 -2.91 -0.02 1.93 16 31 H 0.42 3.21 6.84 -92.71 -0.63 2.58 16 32 H 0.41 4.58 8.93 -92.71 -0.83 3.75 16 33 H 0.13 3.88 7.64 -2.91 -0.02 3.85 16 34 H 0.12 4.06 6.16 -2.91 -0.02 4.04 16 35 H 0.11 4.42 6.16 -2.91 -0.02 4.40 16 36 H 0.09 4.61 6.50 -2.91 -0.02 4.59 16 37 H 0.29 15.59 6.70 -92.71 -0.62 14.97 16 Total: -1.00 -64.59 310.49 3.37 -61.22 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: -0.17 Total: 32.12 kcal Atomic # 6 Polarization: -63.51 SS G_CDS: 2.83 Total: -60.69 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -1.28 Total: -55.00 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.07 Total: -20.40 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.06 Total: 42.74 kcal Total: -64.59 3.37 -61.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239872010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.924 kcal (2) G-P(sol) polarization free energy of solvation -64.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds