Wall clock time and date at job start Tue Mar 31 2020 05:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48498 * 109.47195 * 270.00071 * 3 2 1 5 5 H 1.48509 * 109.46895 * 29.99545 * 3 2 1 6 6 H 1.48493 * 109.47331 * 149.99646 * 3 2 1 7 7 C 1.37883 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99822 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.46966 * 179.97438 * 9 7 2 11 11 C 1.38328 * 119.87572 * 90.00359 * 10 9 7 12 12 C 1.38017 * 120.11924 * 179.97438 * 11 10 9 13 13 C 1.39332 * 119.88101 * 0.02562 * 12 11 10 14 14 C 1.48400 * 120.12287 * 180.02562 * 13 12 11 15 15 C 1.39460 * 120.04863 * 359.97438 * 14 13 12 16 16 C 1.38120 * 120.17209 * 179.72564 * 15 14 13 17 17 C 1.38066 * 120.27057 * 0.28097 * 16 15 14 18 18 C 1.39611 * 120.09829 * 0.02562 * 17 16 15 19 19 C 1.47866 * 120.08637 * 179.97438 * 18 17 16 20 20 N 1.34782 * 119.99819 * 359.97438 * 19 18 17 21 21 O 1.21542 * 120.00271 * 179.97438 * 19 18 17 22 22 C 1.39069 * 120.05407 * 180.29544 * 14 13 12 23 23 C 1.39332 * 119.75579 * 0.27086 * 13 12 11 24 24 C 1.38018 * 119.88080 * 359.43276 * 23 13 12 25 25 H 0.97001 * 119.99847 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46699 * 59.99578 * 9 7 2 27 27 H 1.08992 * 109.47138 * 299.99547 * 9 7 2 28 28 H 1.07998 * 119.94011 * 359.97212 * 11 10 9 29 29 H 1.08000 * 120.06102 * 180.02562 * 12 11 10 30 30 H 1.08002 * 119.91751 * 0.02562 * 15 14 13 31 31 H 1.07993 * 119.86666 * 180.30195 * 16 15 14 32 32 H 1.08000 * 119.94657 * 179.97438 * 17 16 15 33 33 H 0.96999 * 119.99917 * 359.97438 * 20 19 18 34 34 H 0.96994 * 119.99746 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.13028 * 359.97438 * 22 14 13 36 36 H 1.08001 * 120.05902 * 179.72552 * 23 13 12 37 37 H 1.07995 * 119.94377 * 180.27980 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.6781 -4.1683 1.2000 12 6 3.5746 -5.2177 1.2059 13 6 4.0291 -5.7491 0.0007 14 6 4.9926 -6.8778 0.0008 15 6 5.4459 -7.4089 1.2079 16 6 6.3383 -8.4631 1.2110 17 6 6.7920 -8.9943 0.0201 18 6 6.3505 -8.4672 -1.1950 19 6 6.8370 -9.0359 -2.4702 20 7 7.7082 -10.0643 -2.4606 21 8 6.4513 -8.5761 -3.5271 22 6 5.4500 -7.4031 -1.2029 23 6 3.5795 -5.2136 -1.2045 24 6 2.6783 -4.1683 -1.1988 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6242 -2.5568 0.8903 28 1 2.3255 -3.7554 2.1335 29 1 3.9232 -5.6262 2.1429 30 1 5.0946 -6.9981 2.1429 31 1 6.6824 -8.8738 2.1486 32 1 7.4901 -9.8184 0.0286 33 1 8.0163 -10.4310 -1.6171 34 1 8.0271 -10.4376 -3.2971 35 1 5.1051 -6.9916 -2.1399 36 1 3.9320 -5.6189 -2.1414 37 1 2.3258 -3.7554 -2.1323 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239883966.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:20 Heat of formation + Delta-G solvation = -3.516584 kcal Electronic energy + Delta-G solvation = -19861.898659 eV Core-core repulsion = 16760.980695 eV Total energy + Delta-G solvation = -3100.917964 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.35267 -39.07451 -37.81392 -34.29982 -33.63360 -32.24137 -31.47169 -30.22957 -29.86106 -26.73104 -24.51289 -23.75606 -22.42492 -21.62092 -20.64941 -19.87010 -18.43373 -17.09081 -16.48392 -16.30850 -15.77687 -15.09290 -14.96421 -14.92365 -14.29532 -14.12732 -13.95162 -13.78992 -13.14415 -12.89879 -12.80272 -12.49581 -11.90801 -11.76898 -11.44528 -11.28277 -11.09441 -10.72312 -10.55050 -10.32541 -10.15949 -10.02171 -9.77693 -9.53507 -9.16010 -9.14962 -8.45336 -8.37708 -7.50334 -6.06863 -4.11239 0.59064 0.98468 1.99842 2.11119 2.78898 3.20834 3.29510 3.35754 3.39913 3.74378 4.37812 4.50480 4.55202 4.55791 4.67203 4.91898 5.08412 5.26042 5.27281 5.36442 5.42087 5.63931 5.78633 5.93409 5.99183 6.07526 6.14251 6.17631 6.40302 6.44790 6.56278 6.58938 6.75963 7.01065 7.04233 7.11176 7.12375 7.45881 7.64059 7.79203 7.88650 7.97353 8.27672 8.94008 9.52882 11.02819 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028377 B = 0.003129 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.465706 B = 8945.599489 C = 9347.013122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.045 3.955 10 C -0.020 4.020 11 C -0.126 4.126 12 C -0.104 4.104 13 C -0.095 4.095 14 C -0.023 4.023 15 C -0.093 4.093 16 C -0.123 4.123 17 C -0.101 4.101 18 C -0.138 4.138 19 C 0.564 3.436 20 N -0.853 5.853 21 O -0.538 6.538 22 C -0.059 4.059 23 C -0.103 4.103 24 C -0.124 4.124 25 H 0.262 0.738 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.400 0.600 34 H 0.404 0.596 35 H 0.139 0.861 36 H 0.117 0.883 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.945 -20.341 1.996 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.008 3.992 10 C -0.020 4.020 11 C -0.144 4.144 12 C -0.122 4.122 13 C -0.095 4.095 14 C -0.023 4.023 15 C -0.111 4.111 16 C -0.140 4.140 17 C -0.120 4.120 18 C -0.141 4.141 19 C 0.351 3.649 20 N -0.417 5.417 21 O -0.415 6.415 22 C -0.078 4.078 23 C -0.121 4.121 24 C -0.142 4.142 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.139 0.861 29 H 0.133 0.867 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.230 0.770 34 H 0.235 0.765 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.437 -19.803 1.411 23.973 hybrid contribution 0.807 0.589 0.123 1.006 sum 14.244 -19.215 1.534 23.968 Atomic orbital electron populations 1.69957 1.06045 1.26892 1.50357 1.25014 0.94895 0.99295 0.95099 0.86522 0.79821 0.83059 0.78242 1.20535 1.21135 1.19776 1.21042 0.93065 0.89761 1.51227 0.92415 1.18412 0.92618 0.89628 0.98562 1.20847 0.95049 0.94201 0.91917 1.21041 0.98307 0.96466 0.98549 1.21070 0.97794 0.96957 0.96397 1.18446 0.99820 0.97224 0.94032 1.18877 0.95807 0.95016 0.92592 1.21499 0.96097 0.95516 0.98030 1.20992 0.98170 0.97002 0.97884 1.21189 0.99498 0.99458 0.91834 1.19741 1.02002 0.99777 0.92606 1.18347 0.78185 0.79346 0.89050 1.43748 1.48598 1.36870 1.12529 1.90829 1.57582 1.60551 1.32550 1.21396 0.94078 0.93612 0.98709 1.21158 0.97489 0.96795 0.96687 1.21064 0.98122 0.96433 0.98611 0.92786 0.95153 0.95154 0.86056 0.86675 0.85089 0.85356 0.85966 0.77026 0.76532 0.84288 0.86495 0.86004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -14.27 9.09 -34.44 -0.31 -14.59 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.04 1.13 5.10 -29.04 -0.15 0.99 16 10 C -0.02 -0.43 5.07 -104.56 -0.53 -0.96 16 11 C -0.13 -2.38 9.68 -39.63 -0.38 -2.76 16 12 C -0.10 -1.68 9.43 -39.26 -0.37 -2.05 16 13 C -0.10 -1.53 5.88 -104.90 -0.62 -2.15 16 14 C -0.02 -0.31 5.87 -104.95 -0.62 -0.93 16 15 C -0.09 -1.03 9.42 -39.17 -0.37 -1.40 16 16 C -0.12 -1.07 10.02 -39.69 -0.40 -1.47 16 17 C -0.10 -0.86 9.54 -39.13 -0.37 -1.23 16 18 C -0.14 -1.58 5.87 -105.01 -0.62 -2.19 16 19 C 0.56 6.52 8.05 -12.32 -0.10 6.42 16 20 N -0.85 -5.63 8.82 30.53 0.27 -5.36 16 21 O -0.54 -8.49 17.18 5.33 0.09 -8.40 16 22 C -0.06 -0.80 8.97 -38.84 -0.35 -1.15 16 23 C -0.10 -1.77 9.43 -39.26 -0.37 -2.14 16 24 C -0.12 -2.43 9.68 -39.63 -0.38 -2.81 16 25 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 27 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 28 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 29 H 0.12 1.49 6.20 -52.49 -0.33 1.16 16 30 H 0.13 1.26 6.19 -52.49 -0.32 0.93 16 31 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.12 0.58 6.39 -52.49 -0.34 0.24 16 33 H 0.40 1.42 6.86 -40.82 -0.28 1.14 16 34 H 0.40 2.13 8.93 -40.82 -0.36 1.76 16 35 H 0.14 1.99 5.79 -52.49 -0.30 1.68 16 36 H 0.12 1.77 6.20 -52.49 -0.33 1.44 16 37 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 319.64 15.07 4.82 4.82 Total: -1.00 -33.19 319.64 -9.05 -42.24 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -3.91 Total: 2.65 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -6.03 Total: -26.88 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 1.01 Total: -30.90 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.19 -9.05 -42.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239883966.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.723 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds