Wall clock time and date at job start Tue Mar 31 2020 05:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48498 * 109.47195 * 270.00071 * 3 2 1 5 5 H 1.48509 * 109.46895 * 29.99545 * 3 2 1 6 6 H 1.48493 * 109.47331 * 149.99646 * 3 2 1 7 7 C 1.37883 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99822 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.46966 * 179.97438 * 9 7 2 11 11 C 1.38328 * 119.87572 * 90.00359 * 10 9 7 12 12 C 1.38017 * 120.11924 * 179.97438 * 11 10 9 13 13 C 1.39332 * 119.88101 * 0.02562 * 12 11 10 14 14 C 1.48400 * 120.12287 * 180.02562 * 13 12 11 15 15 C 1.39460 * 120.04863 * 359.97438 * 14 13 12 16 16 C 1.38120 * 120.17209 * 179.72564 * 15 14 13 17 17 C 1.38066 * 120.27057 * 0.28097 * 16 15 14 18 18 C 1.39611 * 120.09829 * 0.02562 * 17 16 15 19 19 C 1.47866 * 120.08637 * 179.97438 * 18 17 16 20 20 N 1.34782 * 119.99819 * 359.97438 * 19 18 17 21 21 O 1.21542 * 120.00271 * 179.97438 * 19 18 17 22 22 C 1.39069 * 120.05407 * 180.29544 * 14 13 12 23 23 C 1.39332 * 119.75579 * 0.27086 * 13 12 11 24 24 C 1.38018 * 119.88080 * 359.43276 * 23 13 12 25 25 H 0.97001 * 119.99847 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46699 * 59.99578 * 9 7 2 27 27 H 1.08992 * 109.47138 * 299.99547 * 9 7 2 28 28 H 1.07998 * 119.94011 * 359.97212 * 11 10 9 29 29 H 1.08000 * 120.06102 * 180.02562 * 12 11 10 30 30 H 1.08002 * 119.91751 * 0.02562 * 15 14 13 31 31 H 1.07993 * 119.86666 * 180.30195 * 16 15 14 32 32 H 1.08000 * 119.94657 * 179.97438 * 17 16 15 33 33 H 0.96999 * 119.99917 * 359.97438 * 20 19 18 34 34 H 0.96994 * 119.99746 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.13028 * 359.97438 * 22 14 13 36 36 H 1.08001 * 120.05902 * 179.72552 * 23 13 12 37 37 H 1.07995 * 119.94377 * 180.27980 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.6781 -4.1683 1.2000 12 6 3.5746 -5.2177 1.2059 13 6 4.0291 -5.7491 0.0007 14 6 4.9926 -6.8778 0.0008 15 6 5.4459 -7.4089 1.2079 16 6 6.3383 -8.4631 1.2110 17 6 6.7920 -8.9943 0.0201 18 6 6.3505 -8.4672 -1.1950 19 6 6.8370 -9.0359 -2.4702 20 7 7.7082 -10.0643 -2.4606 21 8 6.4513 -8.5761 -3.5271 22 6 5.4500 -7.4031 -1.2029 23 6 3.5795 -5.2136 -1.2045 24 6 2.6783 -4.1683 -1.1988 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6242 -2.5568 0.8903 28 1 2.3255 -3.7554 2.1335 29 1 3.9232 -5.6262 2.1429 30 1 5.0946 -6.9981 2.1429 31 1 6.6824 -8.8738 2.1486 32 1 7.4901 -9.8184 0.0286 33 1 8.0163 -10.4310 -1.6171 34 1 8.0271 -10.4376 -3.2971 35 1 5.1051 -6.9916 -2.1399 36 1 3.9320 -5.6189 -2.1414 37 1 2.3258 -3.7554 -2.1323 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239883966.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:19 Heat of formation + Delta-G solvation = -24.707635 kcal Electronic energy + Delta-G solvation = -19862.817572 eV Core-core repulsion = 16760.980695 eV Total energy + Delta-G solvation = -3101.836877 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.26832 -40.27464 -38.89097 -35.67924 -34.92191 -33.75923 -32.45268 -31.47700 -31.28990 -28.39161 -25.51838 -25.34785 -23.66369 -22.94085 -21.79236 -21.01740 -19.25644 -18.53808 -17.91420 -17.41427 -16.86263 -16.58871 -16.25085 -15.86686 -15.74864 -15.18494 -15.05055 -14.82292 -14.60058 -14.22807 -14.14969 -13.99736 -13.31067 -13.28303 -12.91848 -12.77677 -12.56325 -12.44166 -12.13466 -11.64831 -11.61421 -11.41801 -11.19275 -10.76885 -10.62668 -10.43897 -9.96351 -9.80121 -8.85310 -8.21172 -6.35966 -0.31901 0.01300 0.56262 0.95632 1.38652 1.39723 1.51302 1.86515 2.38285 2.49757 2.78012 3.08364 3.17561 3.60727 3.78755 3.84930 4.03384 4.15280 4.20321 4.26618 4.38468 4.39516 4.61336 4.72937 4.80887 4.93152 5.08669 5.13674 5.27021 5.31049 5.33156 5.38235 5.41787 5.58983 5.72594 5.76719 5.83645 5.92578 6.04114 6.08162 6.21796 6.40789 6.76534 7.27220 7.32697 8.87036 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028377 B = 0.003129 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.465706 B = 8945.599489 C = 9347.013122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.055 3.945 10 C -0.058 4.058 11 C -0.132 4.132 12 C -0.097 4.097 13 C -0.080 4.080 14 C -0.053 4.053 15 C -0.090 4.090 16 C -0.115 4.115 17 C -0.077 4.077 18 C -0.153 4.153 19 C 0.560 3.440 20 N -0.826 5.826 21 O -0.593 6.593 22 C -0.078 4.078 23 C -0.111 4.111 24 C -0.136 4.136 25 H 0.266 0.734 26 H 0.001 0.999 27 H 0.008 0.992 28 H 0.123 0.877 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.171 0.829 32 H 0.169 0.831 33 H 0.419 0.581 34 H 0.413 0.587 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.467 -22.921 4.054 29.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.568 4.568 8 H 0.072 0.928 9 C 0.018 3.982 10 C -0.058 4.058 11 C -0.150 4.150 12 C -0.115 4.115 13 C -0.080 4.080 14 C -0.053 4.053 15 C -0.107 4.107 16 C -0.133 4.133 17 C -0.095 4.095 18 C -0.156 4.156 19 C 0.346 3.654 20 N -0.390 5.390 21 O -0.475 6.475 22 C -0.097 4.097 23 C -0.129 4.129 24 C -0.154 4.154 25 H 0.075 0.925 26 H 0.020 0.980 27 H 0.026 0.974 28 H 0.141 0.859 29 H 0.174 0.826 30 H 0.166 0.834 31 H 0.188 0.812 32 H 0.186 0.814 33 H 0.252 0.748 34 H 0.245 0.755 35 H 0.134 0.866 36 H 0.148 0.852 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 16.997 -22.435 3.492 28.362 hybrid contribution -0.142 1.128 -0.495 1.240 sum 16.855 -21.306 2.997 27.332 Atomic orbital electron populations 1.70079 1.07667 1.28021 1.51197 1.25937 0.95790 1.03138 0.94507 0.85427 0.78646 0.78350 0.78537 1.19857 1.20247 1.18923 1.21364 0.93048 0.91217 1.51130 0.92824 1.18130 0.92929 0.91180 0.95962 1.20518 0.96601 0.94782 0.93892 1.21112 0.99003 0.97392 0.97484 1.21380 0.96390 0.95578 0.98144 1.18806 0.98790 0.97003 0.93363 1.18761 0.97075 0.95497 0.93971 1.21802 0.95851 0.95732 0.97356 1.21479 0.96566 0.95585 0.99631 1.21719 0.98271 0.99220 0.90315 1.19842 1.02172 0.99678 0.93903 1.18507 0.78510 0.79944 0.88403 1.43519 1.46485 1.34886 1.14141 1.90809 1.59841 1.62572 1.34274 1.21339 0.95427 0.94976 0.97951 1.21309 0.97071 0.96209 0.98292 1.21018 0.99155 0.97525 0.97690 0.92494 0.98032 0.97409 0.85903 0.82592 0.83352 0.81177 0.81360 0.74816 0.75470 0.86589 0.85198 0.86987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 2 C 0.00 0.26 5.46 84.66 0.46 0.72 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.53 -30.90 9.09 25.60 0.23 -30.67 16 8 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 9 C 0.05 3.01 5.10 29.10 0.15 3.16 16 10 C -0.06 -2.64 5.07 -19.82 -0.10 -2.74 16 11 C -0.13 -5.11 9.68 22.24 0.22 -4.89 16 12 C -0.10 -3.02 9.43 22.48 0.21 -2.80 16 13 C -0.08 -2.52 5.88 -20.04 -0.12 -2.63 16 14 C -0.05 -1.35 5.87 -20.08 -0.12 -1.47 16 15 C -0.09 -1.60 9.42 22.54 0.21 -1.39 16 16 C -0.12 -1.33 10.02 22.20 0.22 -1.11 16 17 C -0.08 -0.89 9.54 22.56 0.22 -0.68 16 18 C -0.15 -3.11 5.87 -20.12 -0.12 -3.23 16 19 C 0.56 11.98 8.05 86.79 0.70 12.68 16 20 N -0.83 -8.11 8.82 -175.59 -1.55 -9.66 16 21 O -0.59 -18.94 17.18 -3.85 -0.07 -19.00 16 22 C -0.08 -2.06 8.97 22.75 0.20 -1.85 16 23 C -0.11 -3.95 9.43 22.48 0.21 -3.74 16 24 C -0.14 -5.68 9.68 22.24 0.22 -5.46 16 25 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 26 H 0.00 0.08 8.08 -2.39 -0.02 0.06 16 27 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 28 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 29 H 0.16 3.47 6.20 -2.91 -0.02 3.45 16 30 H 0.15 2.08 6.19 -2.91 -0.02 2.06 16 31 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 32 H 0.17 0.36 6.39 -2.91 -0.02 0.34 16 33 H 0.42 0.84 6.86 -92.71 -0.64 0.21 16 34 H 0.41 3.16 8.93 -92.71 -0.83 2.33 16 35 H 0.12 3.50 5.79 -2.91 -0.02 3.48 16 36 H 0.13 4.18 6.20 -2.91 -0.02 4.16 16 37 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -78.08 319.64 3.16 -74.92 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -0.33 Total: 9.34 kcal Atomic # 6 Polarization: -48.90 SS G_CDS: 2.80 Total: -46.11 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -1.26 Total: -66.14 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.07 Total: -19.00 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -78.08 3.16 -74.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239883966.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.216 kcal (2) G-P(sol) polarization free energy of solvation -78.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds