Wall clock time and date at job start Tue Mar 31 2020 05:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30710 * 1 3 3 Si 1.86796 * 120.00437 * 2 1 4 4 H 1.48501 * 109.47242 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46727 * 300.00409 * 3 2 1 6 6 H 1.48499 * 109.46941 * 60.00216 * 3 2 1 7 7 C 1.40127 * 119.99460 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.40753 * 120.00581 * 359.97438 * 7 2 1 10 10 N 1.33718 * 119.94134 * 0.02562 * 9 7 2 11 11 C 1.31274 * 121.63614 * 179.97438 * 10 9 7 12 12 C 1.39074 * 121.35419 * 0.02562 * 11 10 9 13 13 C 1.38338 * 119.73990 * 359.97438 * 12 11 10 14 14 C 1.39753 * 118.47346 * 359.97438 * 13 12 11 15 15 C 1.47696 * 120.65713 * 179.97438 * 14 13 12 16 16 C 1.39822 * 120.16594 * 129.99805 * 15 14 13 17 17 C 1.37533 * 119.79934 * 180.02562 * 16 15 14 18 18 C 1.39461 * 120.41864 * 359.95257 * 17 16 15 19 19 C 1.38684 * 119.93832 * 359.95301 * 18 17 16 20 20 C 1.38103 * 119.97216 * 359.85790 * 19 18 17 21 21 C 1.50799 * 121.37365 * 180.24737 * 19 18 17 22 22 C 1.53062 * 109.68373 * 342.21980 * 21 19 18 23 23 C 1.53405 * 108.28245 * 48.22426 * 22 21 19 24 24 O 1.35793 * 118.33313 * 179.76849 * 18 17 16 25 25 H 0.96998 * 119.99772 * 359.97438 * 1 2 3 26 26 H 1.07995 * 119.32032 * 179.97438 * 11 10 9 27 27 H 1.08005 * 120.13159 * 179.97438 * 12 11 10 28 28 H 1.08008 * 120.76229 * 180.02562 * 13 12 11 29 29 H 1.08001 * 120.10312 * 0.04146 * 16 15 14 30 30 H 1.07992 * 119.78905 * 179.97438 * 17 16 15 31 31 H 1.08005 * 119.89788 * 180.16805 * 20 19 18 32 32 H 1.09000 * 109.43817 * 222.15082 * 21 19 18 33 33 H 1.09007 * 109.39781 * 102.26603 * 21 19 18 34 34 H 1.08998 * 109.70156 * 288.52110 * 22 21 19 35 35 H 1.09000 * 109.73470 * 167.93827 * 22 21 19 36 36 H 1.09008 * 109.68116 * 175.46277 * 23 22 21 37 37 H 1.08991 * 109.71990 * 54.92304 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6176 0.0000 4 1 3.7012 1.3462 -0.0006 5 1 1.8824 2.3964 -1.2125 6 1 1.8825 2.3963 1.2125 7 6 2.0076 -1.2136 -0.0005 8 1 3.0877 -1.2137 -0.0001 9 6 1.3039 -2.4326 -0.0005 10 7 -0.0333 -2.4312 -0.0005 11 6 -0.7230 -3.5482 -0.0010 12 6 -0.0927 -4.7879 -0.0011 13 6 1.2891 -4.8552 -0.0011 14 6 2.0143 -3.6605 -0.0016 15 6 3.4912 -3.6761 -0.0011 16 6 4.2023 -2.9072 -0.9275 17 6 5.5774 -2.9278 -0.9206 18 6 6.2673 -3.7100 0.0052 19 6 5.5653 -4.4724 0.9267 20 6 4.1844 -4.4538 0.9284 21 6 6.2782 -5.3255 1.9456 22 6 7.7289 -5.5452 1.5096 23 6 8.3245 -4.1869 1.1177 24 8 7.6248 -3.7023 -0.0290 25 1 -0.4850 0.8400 0.0004 26 1 -1.8020 -3.5034 -0.0006 27 1 -0.6796 -5.6945 -0.0011 28 1 1.7957 -5.8090 -0.0015 29 1 3.6733 -2.2987 -1.6461 30 1 6.1265 -2.3342 -1.6364 31 1 3.6389 -5.0460 1.6484 32 1 5.7746 -6.2887 2.0284 33 1 6.2622 -4.8235 2.9130 34 1 7.7573 -6.2197 0.6539 35 1 8.3001 -5.9728 2.3336 36 1 9.3818 -4.3045 0.8799 37 1 8.2098 -3.4833 1.9422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240774835.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:41 Heat of formation + Delta-G solvation = 7.929045 kcal Electronic energy + Delta-G solvation = -21159.712103 eV Core-core repulsion = 18059.290459 eV Total energy + Delta-G solvation = -3100.421644 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.22651 -38.40645 -36.71458 -34.09599 -33.70720 -31.74690 -30.48218 -29.86499 -28.33133 -25.78941 -25.34068 -23.34356 -22.43113 -21.20679 -20.95961 -19.14589 -17.63589 -17.24528 -16.29937 -15.72356 -15.44400 -14.79185 -14.38823 -14.19344 -14.13111 -13.78165 -13.34002 -12.99827 -12.90824 -12.80337 -12.40112 -12.09154 -11.94498 -11.51724 -11.27262 -11.17439 -11.05264 -10.83268 -10.74787 -10.66459 -10.31533 -10.06851 -9.75507 -9.45704 -8.37654 -8.21317 -7.88461 -7.62871 -7.07354 -6.48211 -4.56227 1.85238 1.94427 2.71959 2.99488 3.06211 3.11599 3.18381 3.60800 3.89641 4.35975 4.68562 4.73660 4.80873 4.90540 5.20252 5.31039 5.51981 5.58088 5.65995 5.78764 5.82958 5.88977 6.02330 6.04480 6.07476 6.13274 6.22001 6.38328 6.49525 6.62744 6.82828 6.85535 6.92013 7.08102 7.26216 7.31655 7.38651 7.60500 7.72823 7.90001 8.00586 8.20106 8.57661 8.87094 10.03373 10.21900 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.006005 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.194767 B = 4661.914279 C = 6006.593200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.708 5.708 2 C 0.068 3.932 3 Si 0.902 3.098 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.421 4.421 8 H 0.095 0.905 9 C 0.267 3.733 10 N -0.483 5.483 11 C 0.131 3.869 12 C -0.321 4.321 13 C -0.035 4.035 14 C -0.232 4.232 15 C 0.000 4.000 16 C -0.076 4.076 17 C -0.148 4.148 18 C 0.099 3.901 19 C -0.162 4.162 20 C -0.097 4.097 21 C -0.074 4.074 22 C -0.158 4.158 23 C 0.063 3.937 24 O -0.322 6.322 25 H 0.274 0.726 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.958 -5.683 2.202 12.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.328 5.328 2 C -0.158 4.158 3 Si 0.726 3.274 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.450 4.450 8 H 0.113 0.887 9 C 0.144 3.856 10 N -0.194 5.194 11 C -0.037 4.037 12 C -0.344 4.344 13 C -0.059 4.059 14 C -0.237 4.237 15 C -0.001 4.001 16 C -0.094 4.094 17 C -0.167 4.167 18 C 0.055 3.945 19 C -0.163 4.163 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.195 4.195 23 C -0.013 4.013 24 O -0.237 6.237 25 H 0.085 0.915 26 H 0.136 0.864 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.152 0.848 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.495 -4.622 2.056 11.650 hybrid contribution 0.599 -0.305 0.313 0.741 sum 11.094 -4.926 2.369 12.367 Atomic orbital electron populations 1.70135 1.07299 1.27932 1.27471 1.26153 0.94876 1.01274 0.93536 0.86334 0.81228 0.81128 0.78739 1.18002 1.19626 1.19701 1.19850 0.95038 0.89220 1.40929 0.88730 1.18540 0.87948 0.91003 0.88122 1.68774 1.07099 1.26561 1.16968 1.22601 0.98794 0.88884 0.93453 1.21207 0.94592 0.97825 1.20821 1.20886 0.93736 0.95702 0.95589 1.19318 0.90698 0.94393 1.19311 1.18606 0.92812 0.95003 0.93701 1.21231 0.92088 0.97839 0.98266 1.20449 0.93979 1.01234 1.01016 1.18663 0.81457 0.97018 0.97326 1.19555 0.94325 1.02018 1.00369 1.20980 0.91969 1.00043 0.98535 1.20409 0.94212 0.99270 0.97206 1.22206 0.96932 0.97995 1.02388 1.22833 0.95814 0.94586 0.88053 1.85921 1.16472 1.81427 1.39872 0.91495 0.86432 0.88767 0.88644 0.84796 0.86058 0.86618 0.90529 0.90986 0.90695 0.90363 0.88252 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.46 11.46 55.56 0.64 -17.83 16 2 C 0.07 1.70 5.50 -17.32 -0.10 1.60 16 3 Si 0.90 18.41 29.56 -169.99 -5.02 13.38 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.42 -10.92 7.96 -37.92 -0.30 -11.22 16 8 H 0.09 2.35 5.24 -52.48 -0.27 2.07 16 9 C 0.27 7.13 6.56 -84.71 -0.56 6.57 16 10 N -0.48 -13.11 7.85 -10.91 -0.09 -13.20 16 11 C 0.13 3.14 11.17 -17.48 -0.20 2.94 16 12 C -0.32 -7.12 10.10 -39.23 -0.40 -7.51 16 13 C -0.03 -0.78 9.67 -38.98 -0.38 -1.15 16 14 C -0.23 -5.57 5.53 -104.08 -0.58 -6.14 16 15 C 0.00 -0.01 5.02 -104.93 -0.53 -0.53 16 16 C -0.08 -1.54 7.56 -39.25 -0.30 -1.84 16 17 C -0.15 -2.72 9.92 -39.38 -0.39 -3.11 16 18 C 0.10 1.75 6.49 -38.96 -0.25 1.50 16 19 C -0.16 -2.74 5.75 -104.46 -0.60 -3.34 16 20 C -0.10 -1.83 9.16 -39.11 -0.36 -2.19 16 21 C -0.07 -0.95 5.85 -27.80 -0.16 -1.11 16 22 C -0.16 -1.68 6.19 -26.49 -0.16 -1.84 16 23 C 0.06 0.72 7.02 37.37 0.26 0.98 16 24 O -0.32 -5.08 10.26 -19.09 -0.20 -5.27 16 25 H 0.27 6.44 8.29 -40.82 -0.34 6.11 16 26 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 27 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 28 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 29 H 0.13 2.77 7.24 -52.49 -0.38 2.39 16 30 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.12 2.07 8.05 -52.48 -0.42 1.65 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 309.81 15.07 4.67 4.67 Total: -1.00 -29.19 309.81 -9.43 -38.62 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -4.44 Total: 6.04 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -4.99 Total: -26.41 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.55 Total: -31.03 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.20 Total: -5.27 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.38 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.19 -9.43 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240774835.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.547 kcal (2) G-P(sol) polarization free energy of solvation -29.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds