Wall clock time and date at job start Tue Mar 31 2020 05:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30710 * 1 3 3 Si 1.86796 * 120.00437 * 2 1 4 4 H 1.48501 * 109.47242 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46727 * 300.00409 * 3 2 1 6 6 H 1.48499 * 109.46941 * 60.00216 * 3 2 1 7 7 C 1.40127 * 119.99460 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.40753 * 120.00581 * 359.97438 * 7 2 1 10 10 N 1.33718 * 119.94134 * 0.02562 * 9 7 2 11 11 C 1.31274 * 121.63614 * 179.97438 * 10 9 7 12 12 C 1.39074 * 121.35419 * 0.02562 * 11 10 9 13 13 C 1.38338 * 119.73990 * 359.97438 * 12 11 10 14 14 C 1.39753 * 118.47346 * 359.97438 * 13 12 11 15 15 C 1.47696 * 120.65713 * 179.97438 * 14 13 12 16 16 C 1.39822 * 120.16594 * 129.99805 * 15 14 13 17 17 C 1.37533 * 119.79934 * 180.02562 * 16 15 14 18 18 C 1.39461 * 120.41864 * 359.95257 * 17 16 15 19 19 C 1.38684 * 119.93832 * 359.95301 * 18 17 16 20 20 C 1.38103 * 119.97216 * 359.85790 * 19 18 17 21 21 C 1.50799 * 121.37365 * 180.24737 * 19 18 17 22 22 C 1.53062 * 109.68373 * 342.21980 * 21 19 18 23 23 C 1.53405 * 108.28245 * 48.22426 * 22 21 19 24 24 O 1.35793 * 118.33313 * 179.76849 * 18 17 16 25 25 H 0.96998 * 119.99772 * 359.97438 * 1 2 3 26 26 H 1.07995 * 119.32032 * 179.97438 * 11 10 9 27 27 H 1.08005 * 120.13159 * 179.97438 * 12 11 10 28 28 H 1.08008 * 120.76229 * 180.02562 * 13 12 11 29 29 H 1.08001 * 120.10312 * 0.04146 * 16 15 14 30 30 H 1.07992 * 119.78905 * 179.97438 * 17 16 15 31 31 H 1.08005 * 119.89788 * 180.16805 * 20 19 18 32 32 H 1.09000 * 109.43817 * 222.15082 * 21 19 18 33 33 H 1.09007 * 109.39781 * 102.26603 * 21 19 18 34 34 H 1.08998 * 109.70156 * 288.52110 * 22 21 19 35 35 H 1.09000 * 109.73470 * 167.93827 * 22 21 19 36 36 H 1.09008 * 109.68116 * 175.46277 * 23 22 21 37 37 H 1.08991 * 109.71990 * 54.92304 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6176 0.0000 4 1 3.7012 1.3462 -0.0006 5 1 1.8824 2.3964 -1.2125 6 1 1.8825 2.3963 1.2125 7 6 2.0076 -1.2136 -0.0005 8 1 3.0877 -1.2137 -0.0001 9 6 1.3039 -2.4326 -0.0005 10 7 -0.0333 -2.4312 -0.0005 11 6 -0.7230 -3.5482 -0.0010 12 6 -0.0927 -4.7879 -0.0011 13 6 1.2891 -4.8552 -0.0011 14 6 2.0143 -3.6605 -0.0016 15 6 3.4912 -3.6761 -0.0011 16 6 4.2023 -2.9072 -0.9275 17 6 5.5774 -2.9278 -0.9206 18 6 6.2673 -3.7100 0.0052 19 6 5.5653 -4.4724 0.9267 20 6 4.1844 -4.4538 0.9284 21 6 6.2782 -5.3255 1.9456 22 6 7.7289 -5.5452 1.5096 23 6 8.3245 -4.1869 1.1177 24 8 7.6248 -3.7023 -0.0290 25 1 -0.4850 0.8400 0.0004 26 1 -1.8020 -3.5034 -0.0006 27 1 -0.6796 -5.6945 -0.0011 28 1 1.7957 -5.8090 -0.0015 29 1 3.6733 -2.2987 -1.6461 30 1 6.1265 -2.3342 -1.6364 31 1 3.6389 -5.0460 1.6484 32 1 5.7746 -6.2887 2.0284 33 1 6.2622 -4.8235 2.9130 34 1 7.7573 -6.2197 0.6539 35 1 8.3001 -5.9728 2.3336 36 1 9.3818 -4.3045 0.8799 37 1 8.2098 -3.4833 1.9422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240774835.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:40 Heat of formation + Delta-G solvation = -6.965791 kcal Electronic energy + Delta-G solvation = -21160.357992 eV Core-core repulsion = 18059.290459 eV Total energy + Delta-G solvation = -3101.067533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49603 -40.12754 -38.16655 -35.58338 -35.15698 -33.37091 -32.21928 -31.24769 -29.89197 -27.59042 -26.50371 -24.70624 -23.92554 -22.94455 -22.47954 -20.42329 -19.42837 -18.59695 -17.70509 -17.18333 -16.93186 -16.20692 -16.08910 -15.81698 -15.29216 -15.07571 -14.63815 -14.54049 -14.30089 -14.08496 -13.93778 -13.82319 -13.38226 -13.11937 -12.90494 -12.79683 -12.45688 -12.30725 -12.08816 -11.81738 -11.78904 -11.39058 -11.29482 -11.24007 -10.14850 -9.70873 -9.58696 -9.49364 -8.65558 -8.30913 -6.46534 0.31373 0.49854 0.96224 1.24594 1.37549 1.50648 1.52323 2.19710 2.46067 2.82005 2.92317 3.75386 3.83151 3.89746 3.96867 4.03563 4.15519 4.32914 4.37809 4.44623 4.52554 4.59112 4.63709 4.72958 4.77494 4.81155 4.96082 4.96905 5.12330 5.18178 5.19571 5.24891 5.34844 5.45728 5.62455 5.64266 5.79114 5.98840 6.01121 6.18931 6.31816 6.62025 6.71799 6.98719 8.17556 8.41052 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.006005 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.194767 B = 4661.914279 C = 6006.593200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.025 3.975 3 Si 0.974 3.026 4 H -0.255 1.255 5 H -0.263 1.263 6 H -0.265 1.265 7 C -0.450 4.450 8 H 0.096 0.904 9 C 0.235 3.765 10 N -0.521 5.521 11 C 0.107 3.893 12 C -0.311 4.311 13 C -0.045 4.045 14 C -0.236 4.236 15 C -0.031 4.031 16 C -0.088 4.088 17 C -0.155 4.155 18 C 0.104 3.896 19 C -0.160 4.160 20 C -0.099 4.099 21 C -0.077 4.077 22 C -0.151 4.151 23 C 0.050 3.950 24 O -0.333 6.333 25 H 0.279 0.721 26 H 0.137 0.863 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.136 0.864 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.132 0.868 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.575 -6.943 3.202 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.179 1.179 5 H -0.187 1.187 6 H -0.190 1.190 7 C -0.480 4.480 8 H 0.114 0.886 9 C 0.111 3.889 10 N -0.234 5.234 11 C -0.059 4.059 12 C -0.334 4.334 13 C -0.069 4.069 14 C -0.241 4.241 15 C -0.032 4.032 16 C -0.107 4.107 17 C -0.174 4.174 18 C 0.059 3.941 19 C -0.160 4.160 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.188 4.188 23 C -0.024 4.024 24 O -0.247 6.247 25 H 0.090 0.910 26 H 0.155 0.845 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.134 0.866 30 H 0.154 0.846 31 H 0.142 0.858 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.132 0.868 36 H 0.150 0.850 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.107 -5.915 3.058 14.701 hybrid contribution -0.100 -0.098 0.026 0.142 sum 13.006 -6.013 3.084 14.657 Atomic orbital electron populations 1.70222 1.08817 1.29082 1.29000 1.26995 0.95629 1.04432 0.92650 0.85264 0.79635 0.76576 0.79060 1.17853 1.18731 1.19001 1.20071 0.95236 0.90059 1.42654 0.88649 1.18976 0.88340 0.92512 0.89064 1.68700 1.07829 1.28371 1.18456 1.23036 0.99859 0.89171 0.93877 1.21557 0.94961 0.98353 1.18543 1.21254 0.94038 0.96411 0.95231 1.19647 0.92408 0.94145 1.17867 1.18626 0.91748 0.97192 0.95647 1.21089 0.93015 0.98135 0.98419 1.20601 0.93299 1.01705 1.01770 1.18764 0.82670 0.96090 0.96557 1.19971 0.93694 1.01676 1.00696 1.21091 0.93038 0.99544 0.98006 1.20556 0.95467 0.99091 0.96275 1.22209 0.95579 0.97437 1.03564 1.23276 0.97020 0.95115 0.87031 1.85915 1.15194 1.81574 1.42065 0.90984 0.84523 0.85459 0.85866 0.86569 0.84597 0.85815 0.89217 0.89823 0.91001 0.86780 0.85014 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.74 11.46 21.86 0.25 -40.49 16 2 C 0.03 1.31 5.50 85.32 0.47 1.78 16 3 Si 0.97 38.84 29.56 68.60 2.03 40.87 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.45 -24.46 7.96 23.34 0.19 -24.27 16 8 H 0.10 4.97 5.24 -2.91 -0.02 4.96 16 9 C 0.23 13.08 6.56 40.37 0.26 13.35 16 10 N -0.52 -29.47 7.85 -188.42 -1.48 -30.95 16 11 C 0.11 5.21 11.17 84.98 0.95 6.16 16 12 C -0.31 -13.59 10.10 22.49 0.23 -13.37 16 13 C -0.05 -2.00 9.67 22.66 0.22 -1.78 16 14 C -0.24 -11.60 5.53 -19.51 -0.11 -11.71 16 15 C -0.03 -1.36 5.02 -20.06 -0.10 -1.46 16 16 C -0.09 -3.69 7.56 22.49 0.17 -3.52 16 17 C -0.16 -5.66 9.92 22.40 0.22 -5.44 16 18 C 0.10 3.49 6.49 22.67 0.15 3.63 16 19 C -0.16 -5.09 5.75 -19.76 -0.11 -5.20 16 20 C -0.10 -3.65 9.16 22.57 0.21 -3.45 16 21 C -0.08 -1.71 5.85 29.90 0.17 -1.53 16 22 C -0.15 -2.54 6.19 30.75 0.19 -2.35 16 23 C 0.05 0.95 7.02 72.12 0.51 1.46 16 24 O -0.33 -9.59 10.26 -91.23 -0.94 -10.52 16 25 H 0.28 13.68 8.29 -92.71 -0.77 12.91 16 26 H 0.14 5.88 8.06 -2.91 -0.02 5.85 16 27 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 28 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 29 H 0.12 5.14 7.24 -2.91 -0.02 5.12 16 30 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 31 H 0.12 4.28 8.05 -2.91 -0.02 4.25 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -65.94 309.81 4.56 -61.39 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 1.08 Total: 27.42 kcal Atomic # 6 Polarization: -51.33 SS G_CDS: 3.61 Total: -47.72 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -1.23 Total: -71.44 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.94 Total: -10.52 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -65.94 4.56 -61.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240774835.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.421 kcal (2) G-P(sol) polarization free energy of solvation -65.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds