Wall clock time and date at job start Tue Mar 31 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32607 * 1 3 3 C 1.47755 * 120.00230 * 2 1 4 4 C 1.39541 * 119.74773 * 180.02562 * 3 2 1 5 5 C 1.38339 * 119.05289 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.52935 * 359.97438 * 5 4 3 7 7 C 1.50692 * 120.29954 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47231 * 90.00540 * 7 6 5 9 9 C 1.35672 * 117.00494 * 179.97438 * 8 7 6 10 10 C 1.39311 * 119.81787 * 179.97438 * 9 8 7 11 11 C 1.36444 * 120.18284 * 180.27547 * 10 9 8 12 12 C 1.40831 * 119.80941 * 359.50037 * 11 10 9 13 13 C 1.41217 * 120.17754 * 180.22537 * 12 11 10 14 14 H 1.08003 * 120.00517 * 204.70445 * 13 12 11 15 15 C 1.39895 * 119.99935 * 24.71470 * 13 12 11 16 16 N 1.30879 * 120.00135 * 17.78648 * 15 13 12 17 17 Si 1.86799 * 119.99868 * 197.79097 * 15 13 12 18 18 H 1.48499 * 109.47287 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.46896 * 119.99819 * 17 15 13 20 20 H 1.48501 * 109.46845 * 239.99449 * 17 15 13 21 21 C 1.40831 * 119.64514 * 0.50352 * 12 11 10 22 22 C 1.36435 * 119.81054 * 359.74684 * 21 12 11 23 23 C 1.38263 * 119.39997 * 0.25942 * 6 5 4 24 24 N 1.31745 * 120.91327 * 359.44264 * 23 6 5 25 25 H 1.07997 * 119.99935 * 179.97438 * 1 2 3 26 26 H 1.07993 * 119.99619 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99808 * 180.02562 * 2 1 3 28 28 H 1.08004 * 120.47074 * 0.02562 * 4 3 2 29 29 H 1.08001 * 120.73987 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.47610 * 330.00601 * 7 6 5 31 31 H 1.09001 * 109.47476 * 209.99954 * 7 6 5 32 32 H 1.07997 * 119.91292 * 0.02562 * 10 9 8 33 33 H 1.07996 * 120.09288 * 179.72467 * 11 10 9 34 34 H 0.97001 * 120.00430 * 180.02562 * 16 15 13 35 35 H 1.07999 * 120.09616 * 179.73126 * 21 12 11 36 36 H 1.07993 * 119.91274 * 179.97438 * 22 21 12 37 37 H 1.07997 * 119.54284 * 179.74584 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0649 1.2796 0.0000 4 6 3.4603 1.2734 -0.0005 5 6 4.1375 2.4797 0.0000 6 6 3.3985 3.6549 0.0005 7 6 4.0951 4.9911 0.0017 8 8 4.3158 5.4145 -1.3452 9 6 4.9372 6.6075 -1.5220 10 6 5.1823 7.0766 -2.8106 11 6 5.8117 8.2728 -2.9970 12 6 6.2044 9.0385 -1.8822 13 6 6.8521 10.2798 -2.0661 14 1 7.4940 10.6740 -1.2921 15 6 6.6622 10.9990 -3.2509 16 7 5.6464 10.7227 -4.0285 17 14 7.8586 12.3536 -3.7231 18 1 8.9125 12.4680 -2.6832 19 1 8.4850 12.0275 -5.0295 20 1 7.1291 13.6425 -3.8320 21 6 5.9530 8.5569 -0.5829 22 6 5.3272 7.3564 -0.4138 23 6 2.0174 3.5882 0.0060 24 7 1.3959 2.4267 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8660 -0.9353 -0.0004 28 1 4.0038 0.3401 -0.0014 29 1 5.2171 2.5067 -0.0008 30 1 5.0521 4.9015 0.5157 31 1 3.4738 5.7244 0.5158 32 1 4.8769 6.4901 -3.6644 33 1 6.0049 8.6330 -3.9966 34 1 5.5149 11.2211 -4.8502 35 1 6.2549 9.1360 0.2772 36 1 5.1339 6.9853 0.5818 37 1 1.4403 4.5010 0.0105 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240828830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:30 Heat of formation + Delta-G solvation = 33.071726 kcal Electronic energy + Delta-G solvation = -19754.521406 eV Core-core repulsion = 16655.190030 eV Total energy + Delta-G solvation = -3099.331376 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33689 -38.74113 -36.50479 -34.55577 -33.33584 -32.50932 -31.06594 -29.69974 -28.99407 -26.48122 -24.71204 -24.01282 -22.63155 -20.85143 -20.60102 -20.24626 -17.39026 -17.15657 -17.01434 -16.28307 -15.64327 -15.15367 -14.63729 -14.45015 -14.24164 -14.02614 -13.91616 -13.30617 -12.99894 -12.93443 -12.34461 -12.18050 -12.08266 -11.64460 -11.42381 -11.36985 -11.09492 -10.83685 -10.71669 -10.51811 -10.03412 -9.89706 -9.82857 -9.55483 -9.36913 -9.04676 -8.53295 -7.66457 -7.05653 -6.74101 -4.27407 0.59800 1.20198 2.24718 2.75148 2.93296 3.08073 3.13111 3.18846 3.72229 3.94146 4.08991 4.31475 4.52306 4.59835 4.82945 4.86011 4.98655 5.11702 5.22606 5.39607 5.58408 5.64455 5.67762 5.72580 5.95869 6.05189 6.18714 6.21359 6.30214 6.44732 6.60578 6.69743 6.96050 7.09246 7.16697 7.44044 7.53584 7.76909 7.85845 7.98977 8.18442 8.42092 8.63128 8.88315 8.96566 10.20413 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.054254 B = 0.002673 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.963167 B =10472.523967 C =10631.476755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.150 3.850 4 C -0.165 4.165 5 C -0.053 4.053 6 C -0.135 4.135 7 C 0.111 3.889 8 O -0.322 6.322 9 C -0.011 4.011 10 C -0.118 4.118 11 C -0.134 4.134 12 C 0.088 3.912 13 C -0.462 4.462 14 H 0.077 0.923 15 C 0.074 3.926 16 N -0.798 5.798 17 Si 0.907 3.093 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.275 1.275 21 C -0.198 4.198 22 C -0.166 4.166 23 C 0.126 3.874 24 N -0.484 5.484 25 H 0.104 0.896 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.280 0.720 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.695 -15.244 6.338 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.149 4.149 3 C 0.014 3.986 4 C -0.185 4.185 5 C -0.079 4.079 6 C -0.137 4.137 7 C 0.035 3.965 8 O -0.239 6.239 9 C -0.054 4.054 10 C -0.137 4.137 11 C -0.153 4.153 12 C 0.086 3.914 13 C -0.492 4.492 14 H 0.095 0.905 15 C -0.143 4.143 16 N -0.424 5.424 17 Si 0.731 3.269 18 H -0.185 1.185 19 H -0.197 1.197 20 H -0.201 1.201 21 C -0.218 4.218 22 C -0.185 4.185 23 C -0.032 4.032 24 N -0.192 5.192 25 H 0.122 0.878 26 H 0.131 0.869 27 H 0.143 0.857 28 H 0.154 0.846 29 H 0.155 0.845 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.143 0.857 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.776 -15.292 5.976 17.404 hybrid contribution 1.474 0.825 -0.062 1.691 sum -4.302 -14.467 5.914 16.210 Atomic orbital electron populations 1.24532 0.95813 1.02696 0.94648 1.21602 0.95400 0.93955 1.03911 1.20214 0.90603 0.92440 0.95304 1.22086 0.94611 0.98948 1.02827 1.21508 1.00818 0.91496 0.94083 1.20770 0.95165 0.95446 1.02343 1.21143 0.98800 0.91252 0.85330 1.85901 1.76507 1.36234 1.25219 1.18583 1.05537 0.86994 0.94272 1.19833 1.03445 0.97494 0.92917 1.20980 1.01930 0.92565 0.99872 1.17609 0.90591 0.92683 0.90516 1.19499 1.25361 1.02993 1.01384 0.90489 1.25890 0.94552 0.98140 0.95674 1.69839 1.23787 1.37293 1.11489 0.86286 0.81104 0.80151 0.79313 1.18473 1.19737 1.20068 1.20568 1.07125 0.97378 0.96727 1.20408 1.05108 0.97528 0.95471 1.22670 0.91429 0.95673 0.93448 1.67741 1.40602 0.97891 1.13011 0.87814 0.86878 0.85706 0.84635 0.84460 0.92020 0.91838 0.88519 0.85665 0.90946 0.88685 0.88753 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 14.28 28.83 0.41 -0.78 16 2 C -0.13 -1.22 9.89 -37.59 -0.37 -1.60 16 3 C 0.15 1.83 6.71 -83.08 -0.56 1.27 16 4 C -0.16 -1.82 9.83 -39.06 -0.38 -2.20 16 5 C -0.05 -0.65 9.84 -39.33 -0.39 -1.04 16 6 C -0.14 -1.89 5.53 -104.40 -0.58 -2.47 16 7 C 0.11 1.74 4.88 36.00 0.18 1.91 16 8 O -0.32 -6.52 10.10 -18.72 -0.19 -6.71 16 9 C -0.01 -0.25 6.71 -38.78 -0.26 -0.51 16 10 C -0.12 -2.85 9.92 -39.83 -0.40 -3.25 16 11 C -0.13 -3.49 8.64 -39.25 -0.34 -3.83 16 12 C 0.09 2.35 5.57 -106.81 -0.60 1.75 16 13 C -0.46 -12.20 9.04 -37.83 -0.34 -12.55 16 14 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 15 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 16 N -0.80 -20.61 10.96 55.55 0.61 -20.01 16 17 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 18 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 21 C -0.20 -4.82 9.74 -39.25 -0.38 -5.20 16 22 C -0.17 -3.69 8.96 -39.83 -0.36 -4.05 16 23 C 0.13 1.74 10.85 -17.58 -0.19 1.54 16 24 N -0.48 -6.69 9.31 -9.88 -0.09 -6.78 16 25 H 0.10 0.63 8.06 -52.49 -0.42 0.20 16 26 H 0.11 1.13 7.37 -52.49 -0.39 0.74 16 27 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 29 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.06 0.90 7.60 -51.93 -0.39 0.51 16 31 H 0.06 0.94 7.59 -51.93 -0.39 0.55 16 32 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 33 H 0.13 3.34 6.17 -52.49 -0.32 3.01 16 34 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 35 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 36 H 0.09 1.79 6.27 -52.49 -0.33 1.46 16 37 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 324.44 15.07 4.89 4.89 Total: -1.00 -29.28 324.44 -8.79 -38.07 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -4.34 Total: 6.19 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -4.64 Total: -29.22 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.52 Total: -26.79 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.19 Total: -6.71 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.28 -8.79 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240828830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.146 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds