Wall clock time and date at job start Tue Mar 31 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32607 * 1 3 3 C 1.47755 * 120.00230 * 2 1 4 4 C 1.39541 * 119.74773 * 180.02562 * 3 2 1 5 5 C 1.38339 * 119.05289 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.52935 * 359.97438 * 5 4 3 7 7 C 1.50692 * 120.29954 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47231 * 90.00540 * 7 6 5 9 9 C 1.35672 * 117.00494 * 179.97438 * 8 7 6 10 10 C 1.39311 * 119.81787 * 179.97438 * 9 8 7 11 11 C 1.36444 * 120.18284 * 180.27547 * 10 9 8 12 12 C 1.40831 * 119.80941 * 359.50037 * 11 10 9 13 13 C 1.41217 * 120.17754 * 180.22537 * 12 11 10 14 14 H 1.08003 * 120.00517 * 204.70445 * 13 12 11 15 15 C 1.39895 * 119.99935 * 24.71470 * 13 12 11 16 16 N 1.30879 * 120.00135 * 17.78648 * 15 13 12 17 17 Si 1.86799 * 119.99868 * 197.79097 * 15 13 12 18 18 H 1.48499 * 109.47287 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.46896 * 119.99819 * 17 15 13 20 20 H 1.48501 * 109.46845 * 239.99449 * 17 15 13 21 21 C 1.40831 * 119.64514 * 0.50352 * 12 11 10 22 22 C 1.36435 * 119.81054 * 359.74684 * 21 12 11 23 23 C 1.38263 * 119.39997 * 0.25942 * 6 5 4 24 24 N 1.31745 * 120.91327 * 359.44264 * 23 6 5 25 25 H 1.07997 * 119.99935 * 179.97438 * 1 2 3 26 26 H 1.07993 * 119.99619 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99808 * 180.02562 * 2 1 3 28 28 H 1.08004 * 120.47074 * 0.02562 * 4 3 2 29 29 H 1.08001 * 120.73987 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.47610 * 330.00601 * 7 6 5 31 31 H 1.09001 * 109.47476 * 209.99954 * 7 6 5 32 32 H 1.07997 * 119.91292 * 0.02562 * 10 9 8 33 33 H 1.07996 * 120.09288 * 179.72467 * 11 10 9 34 34 H 0.97001 * 120.00430 * 180.02562 * 16 15 13 35 35 H 1.07999 * 120.09616 * 179.73126 * 21 12 11 36 36 H 1.07993 * 119.91274 * 179.97438 * 22 21 12 37 37 H 1.07997 * 119.54284 * 179.74584 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0649 1.2796 0.0000 4 6 3.4603 1.2734 -0.0005 5 6 4.1375 2.4797 0.0000 6 6 3.3985 3.6549 0.0005 7 6 4.0951 4.9911 0.0017 8 8 4.3158 5.4145 -1.3452 9 6 4.9372 6.6075 -1.5220 10 6 5.1823 7.0766 -2.8106 11 6 5.8117 8.2728 -2.9970 12 6 6.2044 9.0385 -1.8822 13 6 6.8521 10.2798 -2.0661 14 1 7.4940 10.6740 -1.2921 15 6 6.6622 10.9990 -3.2509 16 7 5.6464 10.7227 -4.0285 17 14 7.8586 12.3536 -3.7231 18 1 8.9125 12.4680 -2.6832 19 1 8.4850 12.0275 -5.0295 20 1 7.1291 13.6425 -3.8320 21 6 5.9530 8.5569 -0.5829 22 6 5.3272 7.3564 -0.4138 23 6 2.0174 3.5882 0.0060 24 7 1.3959 2.4267 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8660 -0.9353 -0.0004 28 1 4.0038 0.3401 -0.0014 29 1 5.2171 2.5067 -0.0008 30 1 5.0521 4.9015 0.5157 31 1 3.4738 5.7244 0.5158 32 1 4.8769 6.4901 -3.6644 33 1 6.0049 8.6330 -3.9966 34 1 5.5149 11.2211 -4.8502 35 1 6.2549 9.1360 0.2772 36 1 5.1339 6.9853 0.5818 37 1 1.4403 4.5010 0.0105 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240828830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:29 Heat of formation + Delta-G solvation = 18.494027 kcal Electronic energy + Delta-G solvation = -19755.153542 eV Core-core repulsion = 16655.190030 eV Total energy + Delta-G solvation = -3099.963512 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.34148 -40.37474 -38.21885 -35.57481 -35.05024 -33.46167 -32.18768 -31.43164 -30.81945 -27.70596 -26.48654 -24.96538 -23.80951 -22.62317 -22.28123 -21.06210 -19.26305 -18.71730 -18.03694 -17.32712 -17.06619 -16.72368 -15.95723 -15.75500 -15.60424 -15.21267 -15.04324 -14.75735 -14.33484 -14.06702 -13.91037 -13.77691 -13.63907 -13.08199 -12.91093 -12.75682 -12.47401 -12.38876 -12.16902 -11.76638 -11.60459 -11.42927 -11.16930 -10.89212 -10.82030 -10.50952 -9.56190 -9.41209 -8.93203 -8.59895 -6.23036 -0.31592 0.26854 0.94260 1.02738 1.40177 1.46046 1.50974 1.55419 2.23000 2.58898 2.72494 3.07148 3.27663 3.68597 3.71330 3.78734 3.88274 3.96735 4.26924 4.31284 4.37086 4.43348 4.44565 4.56450 4.76044 4.85882 4.87474 5.06700 5.13739 5.21716 5.22911 5.28398 5.57720 5.58178 5.64182 5.66535 5.79692 5.88542 6.05925 6.26241 6.56044 6.79422 6.91626 6.95136 7.09071 8.36889 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.054254 B = 0.002673 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.963167 B =10472.523967 C =10631.476755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.144 4.144 3 C 0.138 3.862 4 C -0.161 4.161 5 C -0.057 4.057 6 C -0.154 4.154 7 C 0.108 3.892 8 O -0.333 6.333 9 C 0.001 3.999 10 C -0.132 4.132 11 C -0.153 4.153 12 C 0.055 3.945 13 C -0.497 4.497 14 H 0.077 0.923 15 C 0.032 3.968 16 N -0.832 5.832 17 Si 0.982 3.018 18 H -0.258 1.258 19 H -0.265 1.265 20 H -0.267 1.267 21 C -0.207 4.207 22 C -0.163 4.163 23 C 0.113 3.887 24 N -0.506 5.506 25 H 0.134 0.866 26 H 0.093 0.907 27 H 0.156 0.844 28 H 0.171 0.829 29 H 0.154 0.846 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.287 0.713 35 H 0.107 0.893 36 H 0.131 0.869 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.444 -17.009 7.222 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.162 4.162 3 C 0.003 3.997 4 C -0.180 4.180 5 C -0.083 4.083 6 C -0.156 4.156 7 C 0.033 3.967 8 O -0.250 6.250 9 C -0.043 4.043 10 C -0.151 4.151 11 C -0.173 4.173 12 C 0.053 3.947 13 C -0.527 4.527 14 H 0.095 0.905 15 C -0.182 4.182 16 N -0.459 5.459 17 Si 0.803 3.197 18 H -0.181 1.181 19 H -0.190 1.190 20 H -0.192 1.192 21 C -0.227 4.227 22 C -0.181 4.181 23 C -0.045 4.045 24 N -0.215 5.215 25 H 0.152 0.848 26 H 0.112 0.888 27 H 0.174 0.826 28 H 0.188 0.812 29 H 0.172 0.828 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.148 0.852 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.538 -17.075 6.877 19.223 hybrid contribution 1.239 1.138 -0.250 1.701 sum -4.299 -15.937 6.626 17.787 Atomic orbital electron populations 1.24723 0.95851 1.03270 0.93165 1.21906 0.95765 0.93834 1.04688 1.20846 0.91701 0.92976 0.94214 1.22450 0.94287 0.99913 1.01344 1.21796 1.01746 0.91382 0.93353 1.20674 0.95240 0.95213 1.04504 1.21386 0.99891 0.92363 0.83104 1.85893 1.75822 1.34755 1.28507 1.18633 1.04159 0.87663 0.93840 1.19992 1.03560 0.97251 0.94329 1.20896 1.03538 0.93600 0.99249 1.17964 0.91731 0.93412 0.91621 1.19742 1.26565 1.03742 1.02682 0.90530 1.26754 0.95873 1.00453 0.95081 1.69895 1.25184 1.38699 1.12085 0.85158 0.78549 0.76980 0.78992 1.18106 1.19012 1.19224 1.20820 1.07201 0.98339 0.96349 1.20712 1.03755 0.96564 0.97113 1.22788 0.91697 0.96132 0.93875 1.67772 1.41276 0.98452 1.14048 0.84815 0.88819 0.82602 0.81190 0.82791 0.90586 0.91098 0.87597 0.87276 0.90231 0.87518 0.85163 0.82117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 14.28 66.66 0.95 -1.03 16 2 C -0.14 -2.31 9.89 23.63 0.23 -2.08 16 3 C 0.14 3.11 6.71 41.83 0.28 3.39 16 4 C -0.16 -3.10 9.83 22.61 0.22 -2.88 16 5 C -0.06 -1.28 9.84 22.43 0.22 -1.06 16 6 C -0.15 -4.12 5.53 -19.72 -0.11 -4.23 16 7 C 0.11 3.21 4.88 71.23 0.35 3.55 16 8 O -0.33 -13.15 10.10 -89.89 -0.91 -14.06 16 9 C 0.00 0.03 6.71 22.79 0.15 0.19 16 10 C -0.13 -6.51 9.92 22.11 0.22 -6.29 16 11 C -0.15 -8.26 8.64 22.49 0.19 -8.07 16 12 C 0.05 2.99 5.57 -21.28 -0.12 2.87 16 13 C -0.50 -26.95 9.04 23.40 0.21 -26.74 16 14 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 15 C 0.03 1.64 5.14 85.24 0.44 2.08 16 16 N -0.83 -44.15 10.96 21.82 0.24 -43.91 16 17 Si 0.98 38.48 29.59 68.60 2.03 40.51 16 18 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 19 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 21 C -0.21 -10.10 9.74 22.48 0.22 -9.88 16 22 C -0.16 -7.05 8.96 22.11 0.20 -6.86 16 23 C 0.11 3.06 10.85 84.71 0.92 3.98 16 24 N -0.51 -13.66 9.31 -185.16 -1.72 -15.38 16 25 H 0.13 1.17 8.06 -2.91 -0.02 1.15 16 26 H 0.09 1.79 7.37 -2.91 -0.02 1.77 16 27 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 28 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 29 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.08 2.04 7.60 -2.39 -0.02 2.02 16 31 H 0.07 1.99 7.59 -2.39 -0.02 1.97 16 32 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 33 H 0.11 6.11 6.17 -2.91 -0.02 6.09 16 34 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 35 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 36 H 0.13 4.61 6.27 -2.91 -0.02 4.60 16 37 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -64.57 324.44 5.29 -59.28 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 1.07 Total: 26.62 kcal Atomic # 6 Polarization: -57.64 SS G_CDS: 4.58 Total: -53.06 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -1.49 Total: -59.29 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.91 Total: -14.06 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -64.57 5.29 -59.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240828830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.775 kcal (2) G-P(sol) polarization free energy of solvation -64.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds