Wall clock time and date at job start Tue Mar 31 2020 05:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21288 * 120.00227 * 2 1 4 4 C 1.46893 * 119.99892 * 180.02562 * 2 1 3 5 5 C 1.39735 * 120.25003 * 256.55128 * 4 2 1 6 6 C 1.37931 * 119.96134 * 180.02562 * 5 4 2 7 7 C 1.38613 * 120.48593 * 0.02562 * 6 5 4 8 8 C 1.38006 * 120.50669 * 359.71893 * 7 6 5 9 9 C 1.39423 * 120.01950 * 0.55509 * 8 7 6 10 10 C 1.47731 * 120.23951 * 179.72129 * 9 8 7 11 11 C 1.39987 * 119.45302 * 6.48692 * 10 9 8 12 12 C 1.36590 * 119.46435 * 180.02562 * 11 10 9 13 13 C 1.41322 * 118.40995 * 359.97438 * 12 11 10 14 14 C 1.40958 * 120.54907 * 179.73129 * 13 12 11 15 15 H 1.07997 * 119.99959 * 146.87231 * 14 13 12 16 16 C 1.40141 * 119.99702 * 326.86893 * 14 13 12 17 17 N 1.30720 * 119.99992 * 353.73488 * 16 14 13 18 18 Si 1.86804 * 120.00085 * 173.73379 * 16 14 13 19 19 H 1.48496 * 109.46932 * 59.99937 * 18 16 14 20 20 H 1.48502 * 109.47216 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47150 * 300.00277 * 18 16 14 22 22 C 1.41046 * 118.90343 * 0.02562 * 13 12 11 23 23 C 1.50701 * 119.79894 * 179.97438 * 22 13 12 24 24 N 1.31179 * 120.40495 * 0.02562 * 22 13 12 25 25 H 1.08998 * 109.47004 * 240.00245 * 1 2 3 26 26 H 1.09005 * 109.46671 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47186 * 119.99789 * 1 2 3 28 28 H 1.08001 * 120.01906 * 0.02562 * 5 4 2 29 29 H 1.08002 * 119.75672 * 179.97438 * 6 5 4 30 30 H 1.07991 * 119.74700 * 180.02562 * 7 6 5 31 31 H 1.07998 * 119.99310 * 180.27822 * 8 7 6 32 32 H 1.08002 * 120.26823 * 0.04394 * 11 10 9 33 33 H 1.08000 * 120.79146 * 179.97438 * 12 11 10 34 34 H 0.97005 * 119.99564 * 179.97438 * 17 16 14 35 35 H 1.09000 * 109.46883 * 89.99901 * 23 22 13 36 36 H 1.08999 * 109.47007 * 210.00313 * 23 22 13 37 37 H 1.08998 * 109.47317 * 330.00496 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2414 -1.2721 -0.0006 5 6 2.8365 -1.7419 1.1732 6 6 3.5252 -2.9370 1.1658 7 6 3.6334 -3.6791 0.0000 8 6 3.0489 -3.2362 -1.1691 9 6 2.3527 -2.0284 -1.1869 10 6 1.7303 -1.5468 -2.4372 11 6 1.7268 -2.3732 -3.5671 12 6 1.1519 -1.9279 -4.7234 13 6 0.5765 -0.6372 -4.7345 14 6 -0.0237 -0.1304 -5.9049 15 1 -0.8755 0.5296 -5.8326 16 6 0.4850 -0.4829 -7.1623 17 7 1.5871 -1.1804 -7.2493 18 14 -0.4119 0.0439 -8.7139 19 1 -0.4903 1.5260 -8.7613 20 1 0.3257 -0.4506 -9.9041 21 1 -1.7839 -0.5244 -8.7097 22 6 0.6183 0.1381 -3.5569 23 6 0.0114 1.5174 -3.5464 24 7 1.1832 -0.3339 -2.4711 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 2.7573 -1.1696 2.0857 29 1 3.9842 -3.2968 2.0748 30 1 4.1750 -4.6133 0.0079 31 1 3.1345 -3.8233 -2.0716 32 1 2.1747 -3.3550 -3.5249 33 1 1.1375 -2.5474 -5.6079 34 1 1.9390 -1.4247 -8.1196 35 1 -1.0353 1.4515 -3.2496 36 1 0.5510 2.1464 -2.8384 37 1 0.0796 1.9520 -4.5437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241204718.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:15 Heat of formation + Delta-G solvation = 5.573078 kcal Electronic energy + Delta-G solvation = -21299.987868 eV Core-core repulsion = 18199.464061 eV Total energy + Delta-G solvation = -3100.523807 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.69253 -38.30764 -37.44113 -34.38549 -32.47389 -31.59983 -30.69305 -29.81450 -28.86009 -27.06738 -25.32861 -23.11777 -22.67827 -21.09564 -20.06026 -19.15785 -17.55555 -16.60706 -15.80132 -15.50337 -15.17501 -14.45263 -14.29076 -14.19307 -14.06091 -13.50777 -13.32489 -13.16383 -12.66270 -12.27954 -12.08861 -11.85035 -11.72609 -11.70361 -11.48514 -11.38837 -11.26432 -11.07401 -10.98969 -10.83528 -10.60603 -9.99351 -9.59068 -9.03394 -8.75955 -8.52600 -8.37765 -8.22209 -7.28030 -7.01361 -4.67141 1.35902 1.63666 2.58049 2.75551 2.82563 2.90980 2.93056 3.05688 3.69922 4.06835 4.51650 4.74211 5.11865 5.21759 5.24258 5.39797 5.60768 5.73961 5.74855 5.85608 5.95573 6.09359 6.20953 6.26273 6.31536 6.40499 6.53770 6.56285 6.58636 6.73852 6.76834 6.79397 6.83582 6.90354 7.06038 7.20294 7.26676 7.55513 7.67381 7.76359 8.20225 8.23126 8.43402 8.50155 9.37291 9.87224 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024924 B = 0.005140 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.163175 B = 5446.082873 C = 6348.898529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.445 3.555 3 O -0.470 6.470 4 C -0.153 4.153 5 C -0.088 4.088 6 C -0.150 4.150 7 C -0.104 4.104 8 C -0.133 4.133 9 C 0.048 3.952 10 C -0.010 4.010 11 C -0.121 4.121 12 C -0.132 4.132 13 C 0.077 3.923 14 C -0.432 4.432 15 H 0.088 0.912 16 C 0.070 3.930 17 N -0.785 5.785 18 Si 0.919 3.081 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.261 1.261 22 C 0.023 3.977 23 C -0.075 4.075 24 N -0.448 5.448 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.287 0.713 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 -3.815 6.830 7.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.321 3.679 3 O -0.345 6.345 4 C -0.155 4.155 5 C -0.106 4.106 6 C -0.169 4.169 7 C -0.123 4.123 8 C -0.152 4.152 9 C 0.047 3.953 10 C -0.143 4.143 11 C -0.141 4.141 12 C -0.157 4.157 13 C 0.073 3.927 14 C -0.461 4.461 15 H 0.106 0.894 16 C -0.150 4.150 17 N -0.409 5.409 18 Si 0.743 3.257 19 H -0.186 1.186 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.123 4.123 23 C -0.133 4.133 24 N -0.157 5.157 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.118 0.882 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.122 0.878 33 H 0.145 0.855 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.757 -2.870 7.370 7.946 hybrid contribution -0.175 -0.618 -1.676 1.795 sum -0.931 -3.488 5.694 6.742 Atomic orbital electron populations 1.22167 0.94348 1.03913 1.03560 1.21794 0.91214 0.87046 0.67830 1.90474 1.72340 1.34209 1.37441 1.20534 1.02679 0.98022 0.94232 1.20951 0.97023 0.96144 0.96530 1.20878 1.01983 0.95875 0.98143 1.21054 0.99074 0.99399 0.92726 1.21151 0.99420 0.96257 0.98410 1.18687 0.93553 0.92142 0.90900 1.18739 1.09476 0.93443 0.92662 1.21286 1.00157 0.98992 0.93700 1.21335 1.01714 0.95883 0.96738 1.18447 0.90454 0.90963 0.92871 1.19636 1.12713 1.24013 0.89702 0.89378 1.26086 0.94202 0.93180 1.01550 1.69695 1.16165 1.27170 1.27883 0.86160 0.80215 0.80258 0.79069 1.18577 1.20065 1.18537 1.21070 1.04393 0.96544 0.90284 1.20304 0.98515 0.92575 1.01859 1.66533 1.07521 1.12643 1.28997 0.90999 0.90732 0.88245 0.86426 0.86441 0.86380 0.85619 0.87839 0.85490 0.90150 0.93139 0.92833 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 9.72 36.00 0.35 -2.73 16 2 C 0.44 8.84 4.36 -30.81 -0.13 8.71 16 3 O -0.47 -10.73 17.85 5.55 0.10 -10.63 16 4 C -0.15 -2.91 5.58 -104.74 -0.58 -3.50 16 5 C -0.09 -1.40 9.79 -39.14 -0.38 -1.78 16 6 C -0.15 -2.10 10.02 -39.56 -0.40 -2.49 16 7 C -0.10 -1.49 10.02 -39.53 -0.40 -1.89 16 8 C -0.13 -2.25 9.40 -39.23 -0.37 -2.62 16 9 C 0.05 0.96 5.91 -104.48 -0.62 0.35 16 10 C -0.01 -0.24 6.66 -82.78 -0.55 -0.79 16 11 C -0.12 -2.69 9.37 -39.52 -0.37 -3.06 16 12 C -0.13 -3.18 8.67 -39.01 -0.34 -3.52 16 13 C 0.08 1.91 5.52 -106.63 -0.59 1.32 16 14 C -0.43 -10.26 7.93 -37.84 -0.30 -10.56 16 15 H 0.09 1.97 7.17 -52.49 -0.38 1.59 16 16 C 0.07 1.58 5.32 -17.31 -0.09 1.49 16 17 N -0.79 -18.65 10.95 55.56 0.61 -18.04 16 18 Si 0.92 17.00 29.57 -169.99 -5.03 11.97 16 19 H -0.26 -4.81 7.11 56.52 0.40 -4.40 16 20 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 21 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 22 C 0.02 0.54 6.86 -81.81 -0.56 -0.02 16 23 C -0.07 -1.53 9.61 36.01 0.35 -1.19 16 24 N -0.45 -10.52 5.39 -5.41 -0.03 -10.55 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.20 8.12 -51.93 -0.42 0.77 16 27 H 0.10 1.84 6.56 -51.93 -0.34 1.50 16 28 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 29 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 31 H 0.13 1.96 6.20 -52.49 -0.33 1.63 16 32 H 0.10 2.00 6.20 -52.49 -0.33 1.67 16 33 H 0.13 3.09 6.50 -52.49 -0.34 2.75 16 34 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.39 6.90 -51.93 -0.36 1.03 16 LS Contribution 314.36 15.07 4.74 4.74 Total: -1.00 -27.93 314.36 -8.76 -36.69 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -4.16 Total: 8.09 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -4.99 Total: -22.27 kcal Atomic # 7 Polarization: -29.17 SS G_CDS: 0.58 Total: -28.59 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.10 Total: -10.63 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.93 -8.76 -36.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241204718.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.260 kcal (2) G-P(sol) polarization free energy of solvation -27.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds