Wall clock time and date at job start Tue Mar 31 2020 05:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21288 * 120.00227 * 2 1 4 4 C 1.46893 * 119.99892 * 180.02562 * 2 1 3 5 5 C 1.39735 * 120.25003 * 256.55128 * 4 2 1 6 6 C 1.37931 * 119.96134 * 180.02562 * 5 4 2 7 7 C 1.38613 * 120.48593 * 0.02562 * 6 5 4 8 8 C 1.38006 * 120.50669 * 359.71893 * 7 6 5 9 9 C 1.39423 * 120.01950 * 0.55509 * 8 7 6 10 10 C 1.47731 * 120.23951 * 179.72129 * 9 8 7 11 11 C 1.39987 * 119.45302 * 6.48692 * 10 9 8 12 12 C 1.36590 * 119.46435 * 180.02562 * 11 10 9 13 13 C 1.41322 * 118.40995 * 359.97438 * 12 11 10 14 14 C 1.40958 * 120.54907 * 179.73129 * 13 12 11 15 15 H 1.07997 * 119.99959 * 146.87231 * 14 13 12 16 16 C 1.40141 * 119.99702 * 326.86893 * 14 13 12 17 17 N 1.30720 * 119.99992 * 353.73488 * 16 14 13 18 18 Si 1.86804 * 120.00085 * 173.73379 * 16 14 13 19 19 H 1.48496 * 109.46932 * 59.99937 * 18 16 14 20 20 H 1.48502 * 109.47216 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47150 * 300.00277 * 18 16 14 22 22 C 1.41046 * 118.90343 * 0.02562 * 13 12 11 23 23 C 1.50701 * 119.79894 * 179.97438 * 22 13 12 24 24 N 1.31179 * 120.40495 * 0.02562 * 22 13 12 25 25 H 1.08998 * 109.47004 * 240.00245 * 1 2 3 26 26 H 1.09005 * 109.46671 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47186 * 119.99789 * 1 2 3 28 28 H 1.08001 * 120.01906 * 0.02562 * 5 4 2 29 29 H 1.08002 * 119.75672 * 179.97438 * 6 5 4 30 30 H 1.07991 * 119.74700 * 180.02562 * 7 6 5 31 31 H 1.07998 * 119.99310 * 180.27822 * 8 7 6 32 32 H 1.08002 * 120.26823 * 0.04394 * 11 10 9 33 33 H 1.08000 * 120.79146 * 179.97438 * 12 11 10 34 34 H 0.97005 * 119.99564 * 179.97438 * 17 16 14 35 35 H 1.09000 * 109.46883 * 89.99901 * 23 22 13 36 36 H 1.08999 * 109.47007 * 210.00313 * 23 22 13 37 37 H 1.08998 * 109.47317 * 330.00496 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2414 -1.2721 -0.0006 5 6 2.8365 -1.7419 1.1732 6 6 3.5252 -2.9370 1.1658 7 6 3.6334 -3.6791 0.0000 8 6 3.0489 -3.2362 -1.1691 9 6 2.3527 -2.0284 -1.1869 10 6 1.7303 -1.5468 -2.4372 11 6 1.7268 -2.3732 -3.5671 12 6 1.1519 -1.9279 -4.7234 13 6 0.5765 -0.6372 -4.7345 14 6 -0.0237 -0.1304 -5.9049 15 1 -0.8755 0.5296 -5.8326 16 6 0.4850 -0.4829 -7.1623 17 7 1.5871 -1.1804 -7.2493 18 14 -0.4119 0.0439 -8.7139 19 1 -0.4903 1.5260 -8.7613 20 1 0.3257 -0.4506 -9.9041 21 1 -1.7839 -0.5244 -8.7097 22 6 0.6183 0.1381 -3.5569 23 6 0.0114 1.5174 -3.5464 24 7 1.1832 -0.3339 -2.4711 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 2.7573 -1.1696 2.0857 29 1 3.9842 -3.2968 2.0748 30 1 4.1750 -4.6133 0.0079 31 1 3.1345 -3.8233 -2.0716 32 1 2.1747 -3.3550 -3.5249 33 1 1.1375 -2.5474 -5.6079 34 1 1.9390 -1.4247 -8.1196 35 1 -1.0353 1.4515 -3.2496 36 1 0.5510 2.1464 -2.8384 37 1 0.0796 1.9520 -4.5437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241204718.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:14 Heat of formation + Delta-G solvation = -7.403308 kcal Electronic energy + Delta-G solvation = -21300.550566 eV Core-core repulsion = 18199.464061 eV Total energy + Delta-G solvation = -3101.086505 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.21533 -39.97377 -38.87166 -36.07840 -34.08428 -33.16719 -32.20624 -31.31505 -30.23111 -28.78286 -26.94589 -24.56058 -24.14184 -22.76901 -21.65824 -20.57820 -19.30086 -18.04209 -17.38284 -16.93328 -16.78185 -15.98272 -15.87761 -15.69441 -15.45079 -15.11588 -14.74343 -14.65206 -14.24841 -13.69413 -13.58559 -13.42047 -13.40257 -13.18130 -12.96720 -12.92085 -12.75145 -12.64873 -12.49752 -12.25389 -11.97585 -11.68676 -11.24580 -10.55756 -10.28363 -10.09680 -9.98525 -9.79151 -8.93996 -8.69668 -6.46040 -0.06903 0.36254 0.91431 1.13265 1.23655 1.39183 1.50748 1.55035 2.16011 2.60890 2.95093 3.34238 3.57789 3.67307 3.92117 4.14210 4.27818 4.34957 4.41231 4.52280 4.52931 4.62473 4.72645 4.76636 4.86158 4.93150 4.97668 5.00198 5.05993 5.13493 5.21786 5.27126 5.46170 5.49012 5.57283 5.58948 5.77754 5.92532 5.99360 6.09583 6.43140 6.68795 6.70885 6.73354 7.60068 8.21220 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024924 B = 0.005140 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.163175 B = 5446.082873 C = 6348.898529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.442 3.558 3 O -0.511 6.511 4 C -0.174 4.174 5 C -0.094 4.094 6 C -0.130 4.130 7 C -0.096 4.096 8 C -0.137 4.137 9 C 0.009 3.991 10 C -0.013 4.013 11 C -0.128 4.128 12 C -0.149 4.149 13 C 0.048 3.952 14 C -0.460 4.460 15 H 0.093 0.907 16 C 0.032 3.968 17 N -0.821 5.821 18 Si 0.990 3.010 19 H -0.258 1.258 20 H -0.270 1.270 21 H -0.255 1.255 22 C -0.001 4.001 23 C -0.065 4.065 24 N -0.459 5.459 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.139 0.861 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.117 0.883 34 H 0.293 0.707 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.789 -5.209 8.547 10.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.322 3.678 3 O -0.389 6.389 4 C -0.176 4.176 5 C -0.112 4.112 6 C -0.148 4.148 7 C -0.114 4.114 8 C -0.155 4.155 9 C 0.008 3.992 10 C -0.147 4.147 11 C -0.148 4.148 12 C -0.174 4.174 13 C 0.044 3.956 14 C -0.489 4.489 15 H 0.111 0.889 16 C -0.184 4.184 17 N -0.446 5.446 18 Si 0.810 3.190 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.179 1.179 22 C -0.145 4.145 23 C -0.123 4.123 24 N -0.168 5.168 25 H 0.125 0.875 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.157 0.843 29 H 0.179 0.821 30 H 0.177 0.823 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.285 -4.270 9.102 10.058 hybrid contribution -0.181 -0.331 -1.916 1.952 sum -0.466 -4.601 7.186 8.545 Atomic orbital electron populations 1.22121 0.92581 1.04405 1.04278 1.22326 0.92461 0.86996 0.66056 1.90450 1.73269 1.35563 1.39570 1.20661 1.03785 0.97770 0.95341 1.21303 0.96566 0.97208 0.96123 1.21428 0.99506 0.94236 0.99605 1.21530 0.97751 1.00592 0.91521 1.21376 0.98937 0.95130 1.00106 1.18755 0.96122 0.94177 0.90130 1.19358 1.08253 0.93040 0.94034 1.21539 0.99970 1.00156 0.93133 1.21368 1.02888 0.96040 0.97107 1.18765 0.91503 0.91561 0.93781 1.19852 1.13497 1.25232 0.90308 0.88856 1.26921 0.94540 0.92756 1.04196 1.69758 1.17518 1.28508 1.28859 0.85112 0.79007 0.79807 0.75088 1.18216 1.19464 1.17934 1.21534 1.04882 0.97730 0.90365 1.20251 0.99333 0.90977 1.01711 1.66657 1.07964 1.13218 1.28943 0.87469 0.90428 0.89990 0.84287 0.82105 0.82337 0.84883 0.85318 0.86541 0.89646 0.91272 0.93217 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.90 9.72 71.24 0.69 -5.21 16 2 C 0.44 17.55 4.36 27.95 0.12 17.67 16 3 O -0.51 -23.70 17.85 -3.06 -0.05 -23.75 16 4 C -0.17 -6.43 5.58 -19.94 -0.11 -6.54 16 5 C -0.09 -2.67 9.79 22.56 0.22 -2.45 16 6 C -0.13 -2.95 10.02 22.29 0.22 -2.73 16 7 C -0.10 -2.30 10.02 22.30 0.22 -2.07 16 8 C -0.14 -4.30 9.40 22.50 0.21 -4.09 16 9 C 0.01 0.36 5.91 -19.77 -0.12 0.25 16 10 C -0.01 -0.60 6.66 41.89 0.28 -0.32 16 11 C -0.13 -5.84 9.37 22.31 0.21 -5.63 16 12 C -0.15 -7.50 8.67 22.64 0.20 -7.30 16 13 C 0.05 2.50 5.52 -21.17 -0.12 2.38 16 14 C -0.46 -22.69 7.93 23.40 0.19 -22.50 16 15 H 0.09 4.31 7.17 -2.91 -0.02 4.29 16 16 C 0.03 1.49 5.32 85.32 0.45 1.94 16 17 N -0.82 -40.36 10.95 21.86 0.24 -40.12 16 18 Si 0.99 35.20 29.57 68.60 2.03 37.22 16 19 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 20 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 21 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 22 C 0.00 -0.03 6.86 43.35 0.30 0.27 16 23 C -0.07 -2.75 9.61 71.24 0.68 -2.07 16 24 N -0.46 -22.22 5.39 -171.04 -0.92 -23.14 16 25 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 26 H 0.08 2.49 8.12 -2.38 -0.02 2.47 16 27 H 0.08 3.09 6.56 -2.39 -0.02 3.07 16 28 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 29 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 30 H 0.16 2.55 8.06 -2.92 -0.02 2.52 16 31 H 0.13 3.88 6.20 -2.91 -0.02 3.86 16 32 H 0.13 4.99 6.20 -2.91 -0.02 4.97 16 33 H 0.12 5.98 6.50 -2.91 -0.02 5.96 16 34 H 0.29 13.03 8.29 -92.70 -0.77 12.26 16 35 H 0.07 2.58 8.14 -2.39 -0.02 2.57 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.07 2.86 6.90 -2.39 -0.02 2.84 16 Total: -1.00 -63.85 314.36 6.04 -57.81 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 1.10 Total: 30.37 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 3.65 Total: -38.39 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -0.68 Total: -63.26 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.05 Total: -23.75 kcal Atomic # 14 Polarization: 35.20 SS G_CDS: 2.03 Total: 37.22 kcal Total: -63.85 6.04 -57.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241204718.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.410 kcal (2) G-P(sol) polarization free energy of solvation -63.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds