Wall clock time and date at job start Tue Mar 31 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31264 * 119.79914 * 2 1 4 4 C 1.33015 * 121.73029 * 179.97438 * 3 2 1 5 5 C 1.47968 * 119.45481 * 179.97438 * 4 3 2 6 6 C 1.39646 * 119.98561 * 179.97438 * 5 4 3 7 7 C 1.38028 * 119.62933 * 180.18873 * 6 5 4 8 8 C 1.37936 * 120.16518 * 359.91861 * 7 6 5 9 9 C 1.39055 * 121.02553 * 359.78006 * 8 7 6 10 10 C 1.39017 * 119.02170 * 0.42888 * 9 8 7 11 11 O 1.36159 * 111.21707 * 180.68199 * 9 8 7 12 12 C 1.43751 * 109.25676 * 341.06090 * 11 9 8 13 13 C 1.51706 * 131.99257 * 179.45121 * 8 7 6 14 14 C 1.39900 * 121.09473 * 0.25338 * 4 3 2 15 15 C 1.36604 * 119.46692 * 359.49249 * 14 4 3 16 16 C 1.40946 * 119.80179 * 179.97438 * 2 1 3 17 17 C 1.41053 * 120.55451 * 359.97438 * 16 2 1 18 18 H 1.08004 * 119.99870 * 329.70270 * 17 16 2 19 19 C 1.40027 * 120.00554 * 149.69455 * 17 16 2 20 20 N 1.30786 * 120.00446 * 162.34882 * 19 17 16 21 21 Si 1.86803 * 119.99370 * 342.35558 * 19 17 16 22 22 H 1.48504 * 109.47146 * 95.35788 * 21 19 17 23 23 H 1.48506 * 109.46632 * 215.35343 * 21 19 17 24 24 H 1.48495 * 109.47349 * 335.35132 * 21 19 17 25 25 H 1.09000 * 109.47148 * 89.99795 * 1 2 3 26 26 H 1.09001 * 109.46628 * 210.00199 * 1 2 3 27 27 H 1.08997 * 109.47040 * 329.99444 * 1 2 3 28 28 H 1.08005 * 120.18394 * 0.16775 * 6 5 4 29 29 H 1.07999 * 119.91667 * 180.18966 * 7 6 5 30 30 H 1.07994 * 119.93522 * 179.68051 * 10 9 8 31 31 H 1.08999 * 110.74609 * 269.42900 * 12 11 9 32 32 H 1.09000 * 110.89992 * 146.16506 * 12 11 9 33 33 H 1.09002 * 110.93268 * 313.96327 * 13 8 7 34 34 H 1.09001 * 110.94120 * 77.60698 * 13 8 7 35 35 H 1.07999 * 120.26261 * 179.74181 * 14 4 3 36 36 H 1.08007 * 120.79256 * 180.22192 * 15 14 4 37 37 H 0.96993 * 119.99912 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1391 0.0000 4 6 3.4887 1.1839 0.0005 5 6 4.1725 2.4961 -0.0001 6 6 5.5677 2.5561 0.0010 7 6 6.1979 3.7841 0.0043 8 6 5.4534 4.9453 0.0050 9 6 4.0634 4.9054 -0.0023 10 6 3.4241 3.6710 -0.0013 11 8 3.5346 6.1601 -0.0154 12 6 4.5308 7.0991 0.4230 13 6 5.8546 6.4082 0.0191 14 6 4.2512 0.0110 -0.0042 15 6 3.6203 -1.2007 0.0011 16 6 2.2075 -1.2231 0.0005 17 6 1.5099 -2.4490 0.0016 18 1 0.5410 -2.5185 0.4739 19 6 2.0731 -3.5758 -0.6097 20 7 1.6198 -4.7692 -0.3257 21 14 3.4723 -3.3743 -1.8309 22 1 4.7698 -3.5535 -1.1311 23 1 3.3435 -4.3931 -2.9036 24 1 3.4158 -2.0162 -2.4288 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3632 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 6.1503 1.6467 -0.0005 29 1 7.2766 3.8359 0.0021 30 1 2.3452 3.6229 -0.0017 31 1 4.4816 7.2381 1.5030 32 1 4.4200 8.0528 -0.0930 33 1 6.6319 6.5917 0.7610 34 1 6.1783 6.7330 -0.9698 35 1 5.3299 0.0630 -0.0080 36 1 4.1879 -2.1196 0.0012 37 1 2.0103 -5.5497 -0.7489 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241211148.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:51 Heat of formation + Delta-G solvation = 11.479520 kcal Electronic energy + Delta-G solvation = -20667.755176 eV Core-core repulsion = 17567.487492 eV Total energy + Delta-G solvation = -3100.267684 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.77215 -39.00854 -36.97573 -34.24535 -32.78697 -31.93621 -31.40075 -29.74519 -28.84672 -27.24071 -25.13773 -23.11117 -22.25796 -21.95474 -20.93080 -20.04442 -17.75116 -16.99041 -16.42119 -16.08064 -16.00493 -15.11579 -14.93395 -14.15918 -13.62902 -13.49537 -13.42275 -13.18162 -13.01146 -12.86076 -12.52440 -12.27883 -12.01000 -11.74060 -11.63248 -11.54321 -11.31639 -11.18054 -10.92625 -10.72792 -10.48134 -10.30274 -9.96410 -9.65698 -8.74390 -8.50160 -8.25564 -7.97813 -7.36508 -7.26473 -4.70223 1.30734 1.77936 2.42213 2.61227 2.93151 3.04115 3.14092 3.45637 3.74991 4.00019 4.48798 4.53093 4.69935 4.95889 5.07472 5.22200 5.25899 5.39356 5.47291 5.62132 5.68685 5.76583 5.88411 5.98617 6.01519 6.13608 6.32253 6.44699 6.52442 6.56264 6.65970 6.69948 6.75118 6.78585 6.83902 7.00722 7.18463 7.35450 7.47895 7.54731 7.65058 8.01497 8.26541 8.42748 9.32063 9.71953 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031939 B = 0.004155 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.460888 B = 6737.285333 C = 7415.428046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.034 3.966 3 N -0.438 5.438 4 C -0.008 4.008 5 C 0.053 3.947 6 C -0.161 4.161 7 C -0.066 4.066 8 C -0.207 4.207 9 C 0.102 3.898 10 C -0.128 4.128 11 O -0.309 6.309 12 C 0.052 3.948 13 C -0.104 4.104 14 C -0.095 4.095 15 C -0.216 4.216 16 C 0.052 3.948 17 C -0.411 4.411 18 H 0.104 0.896 19 C 0.082 3.918 20 N -0.784 5.784 21 Si 0.912 3.088 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.243 1.243 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.126 0.874 29 H 0.118 0.882 30 H 0.135 0.865 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.298 12.547 -0.158 14.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 N -0.146 5.146 4 C -0.140 4.140 5 C 0.052 3.948 6 C -0.180 4.180 7 C -0.084 4.084 8 C -0.208 4.208 9 C 0.058 3.942 10 C -0.148 4.148 11 O -0.223 6.223 12 C -0.024 4.024 13 C -0.141 4.141 14 C -0.115 4.115 15 C -0.240 4.240 16 C 0.047 3.953 17 C -0.438 4.438 18 H 0.121 0.879 19 C -0.141 4.141 20 N -0.406 5.406 21 Si 0.737 3.263 22 H -0.192 1.192 23 H -0.212 1.212 24 H -0.166 1.166 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.144 0.856 29 H 0.136 0.864 30 H 0.153 0.847 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.600 13.112 -0.219 14.681 hybrid contribution 1.380 -0.972 -0.444 1.745 sum 7.980 12.139 -0.663 14.542 Atomic orbital electron populations 1.20317 0.90328 1.01355 1.01213 1.21071 0.95490 0.87458 1.07439 1.66790 1.08601 1.30333 1.08915 1.18629 0.89035 0.90356 1.15953 1.18283 0.91786 0.91115 0.93571 1.21059 0.93704 0.97230 1.06010 1.20032 0.98839 0.90552 0.99022 1.20626 0.93703 0.94869 1.11610 1.19467 0.91406 0.85644 0.97684 1.20327 1.01046 0.87488 1.05898 1.86805 1.38773 1.14109 1.82625 1.23732 0.85879 0.92685 1.00065 1.21682 0.98087 0.91684 1.02626 1.21218 0.98880 0.93035 0.98391 1.21019 0.94710 0.96639 1.11649 1.18513 0.91960 0.94268 0.90587 1.19642 1.05299 0.90848 1.28045 0.87865 1.26306 0.97066 0.94158 0.96565 1.69649 1.37421 0.99461 1.34102 0.86273 0.80024 0.80221 0.79746 1.19184 1.21169 1.16626 0.92453 0.91263 0.92881 0.85597 0.86440 0.84706 0.90987 0.88171 0.89768 0.89887 0.87396 0.87151 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 9.79 36.01 0.35 -1.14 16 2 C 0.03 0.80 6.86 -81.81 -0.56 0.24 16 3 N -0.44 -10.28 9.28 -5.39 -0.05 -10.33 16 4 C -0.01 -0.19 6.74 -82.75 -0.56 -0.75 16 5 C 0.05 1.05 5.87 -104.99 -0.62 0.44 16 6 C -0.16 -2.69 9.42 -39.13 -0.37 -3.06 16 7 C -0.07 -0.97 10.02 -39.77 -0.40 -1.37 16 8 C -0.21 -3.09 6.28 -103.93 -0.65 -3.74 16 9 C 0.10 1.77 7.02 -38.99 -0.27 1.49 16 10 C -0.13 -2.47 9.59 -38.90 -0.37 -2.85 16 11 O -0.31 -4.88 11.10 -20.25 -0.22 -5.10 16 12 C 0.05 0.56 8.00 38.05 0.30 0.86 16 13 C -0.10 -1.12 7.12 -26.50 -0.19 -1.31 16 14 C -0.10 -2.06 9.38 -39.55 -0.37 -2.43 16 15 C -0.22 -5.01 7.21 -39.01 -0.28 -5.29 16 16 C 0.05 1.27 5.10 -106.64 -0.54 0.72 16 17 C -0.41 -10.17 8.91 -37.84 -0.34 -10.51 16 18 H 0.10 2.61 6.55 -52.48 -0.34 2.26 16 19 C 0.08 1.96 5.42 -17.33 -0.09 1.87 16 20 N -0.78 -19.09 13.93 55.55 0.77 -18.32 16 21 Si 0.91 19.38 24.53 -169.99 -4.17 15.21 16 22 H -0.27 -5.44 6.71 56.52 0.38 -5.07 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.24 -5.45 6.85 56.52 0.39 -5.06 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.07 1.35 6.31 -51.93 -0.33 1.02 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.13 1.90 6.14 -52.48 -0.32 1.58 16 29 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 30 H 0.14 2.72 7.49 -52.49 -0.39 2.32 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.11 1.98 6.14 -52.49 -0.32 1.65 16 36 H 0.11 2.47 4.83 -52.48 -0.25 2.22 16 37 H 0.29 6.39 8.29 -40.82 -0.34 6.05 16 LS Contribution 304.90 15.07 4.59 4.59 Total: -1.00 -27.59 304.90 -8.13 -35.72 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.09 Total: 5.03 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -4.96 Total: -26.81 kcal Atomic # 7 Polarization: -29.38 SS G_CDS: 0.72 Total: -28.65 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.22 Total: -5.10 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.17 Total: 15.21 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.59 -8.13 -35.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241211148.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.201 kcal (2) G-P(sol) polarization free energy of solvation -27.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds