Wall clock time and date at job start Tue Mar 31 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31264 * 119.79914 * 2 1 4 4 C 1.33015 * 121.73029 * 179.97438 * 3 2 1 5 5 C 1.47968 * 119.45481 * 179.97438 * 4 3 2 6 6 C 1.39646 * 119.98561 * 179.97438 * 5 4 3 7 7 C 1.38028 * 119.62933 * 180.18873 * 6 5 4 8 8 C 1.37936 * 120.16518 * 359.91861 * 7 6 5 9 9 C 1.39055 * 121.02553 * 359.78006 * 8 7 6 10 10 C 1.39017 * 119.02170 * 0.42888 * 9 8 7 11 11 O 1.36159 * 111.21707 * 180.68199 * 9 8 7 12 12 C 1.43751 * 109.25676 * 341.06090 * 11 9 8 13 13 C 1.51706 * 131.99257 * 179.45121 * 8 7 6 14 14 C 1.39900 * 121.09473 * 0.25338 * 4 3 2 15 15 C 1.36604 * 119.46692 * 359.49249 * 14 4 3 16 16 C 1.40946 * 119.80179 * 179.97438 * 2 1 3 17 17 C 1.41053 * 120.55451 * 359.97438 * 16 2 1 18 18 H 1.08004 * 119.99870 * 329.70270 * 17 16 2 19 19 C 1.40027 * 120.00554 * 149.69455 * 17 16 2 20 20 N 1.30786 * 120.00446 * 162.34882 * 19 17 16 21 21 Si 1.86803 * 119.99370 * 342.35558 * 19 17 16 22 22 H 1.48504 * 109.47146 * 95.35788 * 21 19 17 23 23 H 1.48506 * 109.46632 * 215.35343 * 21 19 17 24 24 H 1.48495 * 109.47349 * 335.35132 * 21 19 17 25 25 H 1.09000 * 109.47148 * 89.99795 * 1 2 3 26 26 H 1.09001 * 109.46628 * 210.00199 * 1 2 3 27 27 H 1.08997 * 109.47040 * 329.99444 * 1 2 3 28 28 H 1.08005 * 120.18394 * 0.16775 * 6 5 4 29 29 H 1.07999 * 119.91667 * 180.18966 * 7 6 5 30 30 H 1.07994 * 119.93522 * 179.68051 * 10 9 8 31 31 H 1.08999 * 110.74609 * 269.42900 * 12 11 9 32 32 H 1.09000 * 110.89992 * 146.16506 * 12 11 9 33 33 H 1.09002 * 110.93268 * 313.96327 * 13 8 7 34 34 H 1.09001 * 110.94120 * 77.60698 * 13 8 7 35 35 H 1.07999 * 120.26261 * 179.74181 * 14 4 3 36 36 H 1.08007 * 120.79256 * 180.22192 * 15 14 4 37 37 H 0.96993 * 119.99912 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1391 0.0000 4 6 3.4887 1.1839 0.0005 5 6 4.1725 2.4961 -0.0001 6 6 5.5677 2.5561 0.0010 7 6 6.1979 3.7841 0.0043 8 6 5.4534 4.9453 0.0050 9 6 4.0634 4.9054 -0.0023 10 6 3.4241 3.6710 -0.0013 11 8 3.5346 6.1601 -0.0154 12 6 4.5308 7.0991 0.4230 13 6 5.8546 6.4082 0.0191 14 6 4.2512 0.0110 -0.0042 15 6 3.6203 -1.2007 0.0011 16 6 2.2075 -1.2231 0.0005 17 6 1.5099 -2.4490 0.0016 18 1 0.5410 -2.5185 0.4739 19 6 2.0731 -3.5758 -0.6097 20 7 1.6198 -4.7692 -0.3257 21 14 3.4723 -3.3743 -1.8309 22 1 4.7698 -3.5535 -1.1311 23 1 3.3435 -4.3931 -2.9036 24 1 3.4158 -2.0162 -2.4288 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3632 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 6.1503 1.6467 -0.0005 29 1 7.2766 3.8359 0.0021 30 1 2.3452 3.6229 -0.0017 31 1 4.4816 7.2381 1.5030 32 1 4.4200 8.0528 -0.0930 33 1 6.6319 6.5917 0.7610 34 1 6.1783 6.7330 -0.9698 35 1 5.3299 0.0630 -0.0080 36 1 4.1879 -2.1196 0.0012 37 1 2.0103 -5.5497 -0.7489 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241211148.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:51 Heat of formation + Delta-G solvation = -3.827689 kcal Electronic energy + Delta-G solvation = -20668.418946 eV Core-core repulsion = 17567.487492 eV Total energy + Delta-G solvation = -3100.931455 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.93557 -40.70470 -38.30333 -35.97957 -34.19558 -33.58611 -32.86460 -31.02972 -30.12530 -28.94872 -26.67632 -24.48605 -23.69568 -23.24674 -22.34455 -21.59831 -19.51446 -18.33861 -17.64956 -17.58046 -17.10671 -16.75484 -16.42856 -15.58913 -15.25129 -15.21460 -14.76453 -14.59715 -14.34704 -14.03086 -13.85702 -13.75537 -13.56483 -13.39556 -13.04848 -12.88852 -12.70601 -12.59426 -12.46707 -12.16024 -11.80360 -11.71650 -11.62543 -11.37817 -10.36643 -10.09612 -10.00853 -9.36821 -9.04255 -8.86019 -6.54267 -0.14296 0.48751 0.71099 0.92140 1.22814 1.36107 1.43958 2.04111 2.35600 2.48261 2.89730 3.49322 3.53889 3.60755 3.77513 4.03681 4.06645 4.21361 4.23773 4.33548 4.43992 4.52102 4.62121 4.66882 4.76268 4.84489 4.92482 4.93008 4.95052 4.99697 5.07523 5.14336 5.31094 5.43573 5.46929 5.51401 5.61479 5.69572 5.81637 5.92589 6.17935 6.29940 6.47933 6.61037 7.54585 8.00404 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031939 B = 0.004155 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.460888 B = 6737.285333 C = 7415.428046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.012 3.988 3 N -0.459 5.459 4 C -0.003 4.003 5 C 0.017 3.983 6 C -0.156 4.156 7 C -0.061 4.061 8 C -0.194 4.194 9 C 0.086 3.914 10 C -0.148 4.148 11 O -0.332 6.332 12 C 0.042 3.958 13 C -0.098 4.098 14 C -0.103 4.103 15 C -0.223 4.223 16 C 0.035 3.965 17 C -0.443 4.443 18 H 0.081 0.919 19 C 0.054 3.946 20 N -0.820 5.820 21 Si 0.958 3.042 22 H -0.249 1.249 23 H -0.271 1.271 24 H -0.264 1.264 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.144 0.856 29 H 0.161 0.839 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.145 0.855 36 H 0.118 0.882 37 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.988 15.352 -0.492 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.134 4.134 3 N -0.167 5.167 4 C -0.136 4.136 5 C 0.017 3.983 6 C -0.175 4.175 7 C -0.079 4.079 8 C -0.195 4.195 9 C 0.041 3.959 10 C -0.168 4.168 11 O -0.247 6.247 12 C -0.032 4.032 13 C -0.134 4.134 14 C -0.122 4.122 15 C -0.247 4.247 16 C 0.030 3.970 17 C -0.472 4.472 18 H 0.099 0.901 19 C -0.165 4.165 20 N -0.444 5.444 21 Si 0.781 3.219 22 H -0.174 1.174 23 H -0.197 1.197 24 H -0.188 1.188 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.162 0.838 29 H 0.178 0.822 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.149 0.851 33 H 0.134 0.866 34 H 0.120 0.880 35 H 0.163 0.837 36 H 0.136 0.864 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.267 15.908 -0.542 18.942 hybrid contribution 0.349 -1.396 -0.290 1.468 sum 10.616 14.512 -0.832 18.000 Atomic orbital electron populations 1.20299 0.88750 1.01749 1.01834 1.21548 0.96980 0.87471 1.07424 1.66904 1.09642 1.30296 1.09868 1.19317 0.88947 0.92228 1.13068 1.18316 0.93282 0.89818 0.96928 1.21330 0.92290 0.99194 1.04656 1.20474 1.00930 0.89347 0.97117 1.21237 0.92585 0.97459 1.08198 1.19573 0.92704 0.85615 0.97962 1.20242 1.00094 0.89037 1.07423 1.86785 1.41016 1.14114 1.82826 1.24162 0.84870 0.92813 1.01398 1.21838 0.98672 0.88181 1.04754 1.21565 1.00798 0.92026 0.97853 1.21238 0.94404 0.97717 1.11372 1.18681 0.92853 0.94295 0.91205 1.19542 1.05181 0.91960 1.30507 0.90068 1.26811 0.98657 0.93697 0.97293 1.69653 1.39065 1.00058 1.35614 0.85591 0.78732 0.79148 0.78452 1.17378 1.19660 1.18819 0.91660 0.91472 0.91728 0.83800 0.82173 0.87233 0.89778 0.85094 0.86641 0.87981 0.83722 0.86442 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.89 9.79 71.24 0.70 -2.19 16 2 C 0.01 0.59 6.86 43.31 0.30 0.89 16 3 N -0.46 -22.16 9.28 -170.97 -1.59 -23.75 16 4 C 0.00 -0.12 6.74 41.95 0.28 0.16 16 5 C 0.02 0.68 5.87 -20.10 -0.12 0.56 16 6 C -0.16 -4.72 9.42 22.56 0.21 -4.51 16 7 C -0.06 -1.49 10.02 22.15 0.22 -1.27 16 8 C -0.19 -4.98 6.28 -19.42 -0.12 -5.10 16 9 C 0.09 2.83 7.02 22.65 0.16 2.99 16 10 C -0.15 -5.76 9.59 22.71 0.22 -5.54 16 11 O -0.33 -9.88 11.10 -95.36 -1.06 -10.94 16 12 C 0.04 0.73 8.00 72.56 0.58 1.31 16 13 C -0.10 -1.58 7.12 30.75 0.22 -1.36 16 14 C -0.10 -4.35 9.38 22.29 0.21 -4.14 16 15 C -0.22 -10.35 7.21 22.64 0.16 -10.18 16 16 C 0.03 1.74 5.10 -21.17 -0.11 1.63 16 17 C -0.44 -23.11 8.91 23.39 0.21 -22.90 16 18 H 0.08 4.43 6.55 -2.91 -0.02 4.41 16 19 C 0.05 2.69 5.42 85.28 0.46 3.15 16 20 N -0.82 -41.22 13.93 21.84 0.30 -40.91 16 21 Si 0.96 40.00 24.53 68.60 1.68 41.69 16 22 H -0.25 -9.61 6.71 99.48 0.67 -8.95 16 23 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 24 H -0.26 -11.81 6.85 99.48 0.68 -11.13 16 25 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.07 2.80 6.31 -2.39 -0.02 2.78 16 27 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.14 3.75 6.14 -2.91 -0.02 3.73 16 29 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 30 H 0.11 4.66 7.49 -2.91 -0.02 4.64 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.15 4.89 6.14 -2.91 -0.02 4.87 16 36 H 0.12 5.20 4.83 -2.91 -0.01 5.18 16 37 H 0.30 13.46 8.29 -92.71 -0.77 12.69 16 Total: -1.00 -63.13 304.90 3.97 -59.17 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 1.04 Total: 21.25 kcal Atomic # 6 Polarization: -50.08 SS G_CDS: 3.58 Total: -46.50 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -1.28 Total: -64.66 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.06 Total: -10.94 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 1.68 Total: 41.69 kcal Total: -63.13 3.97 -59.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241211148.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.339 kcal (2) G-P(sol) polarization free energy of solvation -63.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds