Wall clock time and date at job start Tue Mar 31 2020 05:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38873 * 119.24664 * 2 1 4 4 C 1.36882 * 119.79660 * 179.72712 * 3 2 1 5 5 C 1.41129 * 118.39443 * 0.52854 * 4 3 2 6 6 C 1.40887 * 120.71615 * 179.70877 * 5 4 3 7 7 H 1.08007 * 119.99529 * 151.34035 * 6 5 4 8 8 C 1.40065 * 120.00439 * 331.34392 * 6 5 4 9 9 N 1.30778 * 119.99908 * 348.77414 * 8 6 5 10 10 Si 1.86799 * 120.00164 * 168.77500 * 8 6 5 11 11 H 1.48495 * 109.47213 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47239 * 120.00118 * 10 8 6 13 13 H 1.48502 * 109.47095 * 239.99794 * 10 8 6 14 14 C 1.41861 * 118.56084 * 359.73873 * 5 4 3 15 15 C 1.47825 * 119.98860 * 180.02562 * 14 5 4 16 16 C 1.39717 * 119.98860 * 315.92577 * 15 14 5 17 17 C 1.38009 * 119.61685 * 179.57957 * 16 15 14 18 18 C 1.37955 * 120.17734 * 0.52290 * 17 16 15 19 19 C 1.39063 * 121.03343 * 0.02562 * 18 17 16 20 20 C 1.38990 * 119.02882 * 359.64416 * 19 18 17 21 21 O 1.36167 * 111.21642 * 179.28850 * 19 18 17 22 22 C 1.43759 * 109.25679 * 18.90404 * 21 19 18 23 23 C 1.51703 * 131.98144 * 180.24914 * 18 17 16 24 24 N 1.31744 * 119.24699 * 180.26890 * 2 1 3 25 25 H 1.09000 * 109.47255 * 269.72733 * 1 2 3 26 26 H 1.09002 * 109.47362 * 149.72910 * 1 2 3 27 27 H 1.09002 * 109.47099 * 29.73405 * 1 2 3 28 28 H 1.08003 * 120.09818 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.80435 * 180.26386 * 4 3 2 30 30 H 0.96998 * 119.99989 * 179.97438 * 9 8 6 31 31 H 1.07999 * 120.18817 * 359.85161 * 16 15 14 32 32 H 1.07999 * 119.91405 * 180.20186 * 17 16 15 33 33 H 1.08005 * 119.93886 * 180.16068 * 20 19 18 34 34 H 1.08997 * 110.74571 * 90.58414 * 22 21 19 35 35 H 1.08996 * 110.73930 * 213.73489 * 22 21 19 36 36 H 1.08996 * 110.93910 * 46.08961 * 23 18 17 37 37 H 1.09004 * 110.93962 * 282.40197 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2117 0.0000 4 6 3.5542 1.2248 0.0057 5 6 4.2373 -0.0101 -0.0001 6 6 5.6455 -0.0536 -0.0008 7 1 6.1600 -0.8927 0.4439 8 6 6.3782 0.9912 -0.5781 9 7 5.7703 1.8922 -1.3053 10 14 8.2237 1.0975 -0.3094 11 1 8.6657 -0.0345 0.5439 12 1 8.9194 1.0302 -1.6197 13 1 8.5532 2.3812 0.3605 14 6 3.4752 -1.2066 -0.0058 15 6 4.1582 -2.5176 -0.0113 16 6 5.2523 -2.7315 -0.8535 17 6 5.8896 -3.9556 -0.8461 18 6 5.4421 -4.9655 -0.0197 19 6 4.3478 -4.7752 0.8171 20 6 3.7065 -3.5421 0.8188 21 8 4.0708 -5.9017 1.5301 22 6 5.2253 -6.7583 1.5307 23 6 5.9310 -6.3838 0.2059 24 7 2.1506 -1.1495 -0.0054 25 1 -0.3634 -0.0049 1.0276 26 1 -0.3634 -0.8875 -0.5180 27 1 -0.3633 0.8924 -0.5097 28 1 1.6348 2.1408 -0.0004 29 1 4.0983 2.1577 0.0100 30 1 6.2777 2.6160 -1.7048 31 1 5.5999 -1.9421 -1.5033 32 1 6.7378 -4.1251 -1.4928 33 1 2.8567 -3.3773 1.4648 34 1 5.8667 -6.5412 2.3849 35 1 4.9279 -7.8069 1.5298 36 1 7.0146 -6.4085 0.3213 37 1 5.6119 -7.0394 -0.6044 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241212998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:54 Heat of formation + Delta-G solvation = 8.948281 kcal Electronic energy + Delta-G solvation = -21109.310447 eV Core-core repulsion = 18008.933000 eV Total energy + Delta-G solvation = -3100.377447 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54964 -38.73269 -36.63554 -34.36003 -32.64212 -31.30720 -30.76606 -29.48909 -28.46664 -27.60821 -24.53232 -23.21520 -21.95189 -21.61069 -20.65079 -20.05663 -17.46456 -16.75664 -16.15809 -15.90054 -15.59181 -15.07645 -14.35074 -14.12938 -13.74273 -13.41812 -13.06141 -12.97274 -12.73668 -12.54059 -12.23092 -11.94534 -11.76094 -11.57707 -11.53016 -11.42826 -11.15386 -11.03173 -11.00070 -10.61150 -10.41602 -10.22572 -9.81957 -9.46812 -8.54160 -8.15225 -8.11248 -7.60493 -7.28086 -6.91751 -4.55414 1.70764 2.07979 2.56391 2.91452 2.97008 3.02926 3.09916 3.65368 3.77665 4.35024 4.50601 4.72642 4.89932 5.13265 5.30621 5.41164 5.54318 5.59851 5.70822 5.86146 6.00633 6.08167 6.13673 6.16106 6.21366 6.31249 6.38752 6.50783 6.66687 6.75587 6.84987 6.94228 6.97583 7.03870 7.15753 7.24067 7.42261 7.63053 7.73207 7.83358 7.88535 8.33245 8.54942 8.61408 9.53607 9.95530 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.007020 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.695211 B = 3987.872734 C = 5897.889274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.005 4.005 3 C -0.143 4.143 4 C -0.124 4.124 5 C 0.085 3.915 6 C -0.438 4.438 7 H 0.090 0.910 8 C 0.073 3.927 9 N -0.789 5.789 10 Si 0.910 3.090 11 H -0.257 1.257 12 H -0.271 1.271 13 H -0.270 1.270 14 C 0.014 3.986 15 C 0.059 3.941 16 C -0.118 4.118 17 C -0.080 4.080 18 C -0.198 4.198 19 C 0.090 3.910 20 C -0.125 4.125 21 O -0.312 6.312 22 C 0.052 3.948 23 C -0.104 4.104 24 N -0.448 5.448 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.129 0.871 30 H 0.284 0.716 31 H 0.140 0.860 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 -7.537 1.512 8.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.147 4.147 3 C -0.163 4.163 4 C -0.150 4.150 5 C 0.080 3.920 6 C -0.467 4.467 7 H 0.108 0.892 8 C -0.146 4.146 9 N -0.414 5.414 10 Si 0.734 3.266 11 H -0.180 1.180 12 H -0.196 1.196 13 H -0.195 1.195 14 C -0.123 4.123 15 C 0.058 3.942 16 C -0.136 4.136 17 C -0.099 4.099 18 C -0.200 4.200 19 C 0.046 3.954 20 C -0.144 4.144 21 O -0.226 6.226 22 C -0.023 4.023 23 C -0.141 4.141 24 N -0.156 5.156 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.118 0.882 29 H 0.147 0.853 30 H 0.095 0.905 31 H 0.158 0.842 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.619 -8.150 1.480 8.440 hybrid contribution 1.490 1.005 -0.034 1.798 sum 3.109 -7.145 1.446 7.925 Atomic orbital electron populations 1.20295 0.91467 1.00972 1.00498 1.20285 0.94904 0.88502 1.11039 1.21277 0.95471 0.97148 1.02411 1.21448 0.92576 0.98906 1.02058 1.18325 0.94154 0.90706 0.88767 1.19666 0.90977 1.04779 1.31269 0.89209 1.26003 1.01667 0.94091 0.92837 1.69748 1.38711 1.10825 1.22090 0.86198 0.81386 0.79654 0.79372 1.17998 1.19646 1.19547 1.19387 0.88373 0.91035 1.13544 1.18098 0.92900 0.90815 0.92376 1.21369 0.96008 0.96510 0.99755 1.20119 0.99565 0.92025 0.98157 1.20624 1.00904 0.95900 1.02531 1.19364 0.95783 0.87445 0.92805 1.20349 1.02168 0.89084 1.02811 1.86784 1.36442 1.28082 1.71332 1.23709 0.86365 0.94710 0.97527 1.21677 1.01090 0.93792 0.97530 1.66850 1.09575 1.29315 1.09854 0.93102 0.92533 0.92863 0.88238 0.85335 0.90457 0.84236 0.86566 0.85975 0.91159 0.88389 0.89843 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 10.15 36.00 0.37 -0.99 16 2 C -0.01 -0.12 6.79 -82.40 -0.56 -0.68 16 3 C -0.14 -3.25 9.64 -39.84 -0.38 -3.63 16 4 C -0.12 -3.08 8.71 -38.98 -0.34 -3.42 16 5 C 0.09 2.17 5.54 -106.41 -0.59 1.58 16 6 C -0.44 -10.72 6.73 -37.90 -0.25 -10.97 16 7 H 0.09 2.17 6.50 -52.48 -0.34 1.83 16 8 C 0.07 1.69 5.27 -17.32 -0.09 1.60 16 9 N -0.79 -18.86 10.90 55.55 0.61 -18.25 16 10 Si 0.91 17.48 29.58 -169.99 -5.03 12.45 16 11 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 12 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 13 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 14 C 0.01 0.36 6.42 -82.24 -0.53 -0.17 16 15 C 0.06 1.34 5.24 -105.00 -0.55 0.79 16 16 C -0.12 -2.44 7.86 -39.11 -0.31 -2.75 16 17 C -0.08 -1.43 10.02 -39.77 -0.40 -1.83 16 18 C -0.20 -3.43 6.28 -103.93 -0.65 -4.08 16 19 C 0.09 1.73 7.02 -39.00 -0.27 1.46 16 20 C -0.12 -2.67 9.66 -38.88 -0.38 -3.04 16 21 O -0.31 -5.43 11.10 -20.27 -0.23 -5.65 16 22 C 0.05 0.65 8.01 38.06 0.30 0.95 16 23 C -0.10 -1.32 7.12 -26.49 -0.19 -1.51 16 24 N -0.45 -11.05 10.05 -5.45 -0.05 -11.11 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.84 8.07 -51.93 -0.42 0.43 16 28 H 0.10 1.97 8.06 -52.48 -0.42 1.55 16 29 H 0.13 3.21 6.33 -52.49 -0.33 2.88 16 30 H 0.28 6.16 8.29 -40.82 -0.34 5.82 16 31 H 0.14 3.01 6.78 -52.49 -0.36 2.65 16 32 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 33 H 0.12 2.64 8.06 -52.48 -0.42 2.22 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -27.81 312.40 -9.20 -37.01 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.39 Total: 7.52 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -4.82 Total: -26.68 kcal Atomic # 7 Polarization: -29.91 SS G_CDS: 0.55 Total: -29.36 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.23 Total: -5.65 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.81 -9.20 -37.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241212998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.960 kcal (2) G-P(sol) polarization free energy of solvation -27.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds