Wall clock time and date at job start Tue Mar 31 2020 05:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38873 * 119.24664 * 2 1 4 4 C 1.36882 * 119.79660 * 179.72712 * 3 2 1 5 5 C 1.41129 * 118.39443 * 0.52854 * 4 3 2 6 6 C 1.40887 * 120.71615 * 179.70877 * 5 4 3 7 7 H 1.08007 * 119.99529 * 151.34035 * 6 5 4 8 8 C 1.40065 * 120.00439 * 331.34392 * 6 5 4 9 9 N 1.30778 * 119.99908 * 348.77414 * 8 6 5 10 10 Si 1.86799 * 120.00164 * 168.77500 * 8 6 5 11 11 H 1.48495 * 109.47213 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47239 * 120.00118 * 10 8 6 13 13 H 1.48502 * 109.47095 * 239.99794 * 10 8 6 14 14 C 1.41861 * 118.56084 * 359.73873 * 5 4 3 15 15 C 1.47825 * 119.98860 * 180.02562 * 14 5 4 16 16 C 1.39717 * 119.98860 * 315.92577 * 15 14 5 17 17 C 1.38009 * 119.61685 * 179.57957 * 16 15 14 18 18 C 1.37955 * 120.17734 * 0.52290 * 17 16 15 19 19 C 1.39063 * 121.03343 * 0.02562 * 18 17 16 20 20 C 1.38990 * 119.02882 * 359.64416 * 19 18 17 21 21 O 1.36167 * 111.21642 * 179.28850 * 19 18 17 22 22 C 1.43759 * 109.25679 * 18.90404 * 21 19 18 23 23 C 1.51703 * 131.98144 * 180.24914 * 18 17 16 24 24 N 1.31744 * 119.24699 * 180.26890 * 2 1 3 25 25 H 1.09000 * 109.47255 * 269.72733 * 1 2 3 26 26 H 1.09002 * 109.47362 * 149.72910 * 1 2 3 27 27 H 1.09002 * 109.47099 * 29.73405 * 1 2 3 28 28 H 1.08003 * 120.09818 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.80435 * 180.26386 * 4 3 2 30 30 H 0.96998 * 119.99989 * 179.97438 * 9 8 6 31 31 H 1.07999 * 120.18817 * 359.85161 * 16 15 14 32 32 H 1.07999 * 119.91405 * 180.20186 * 17 16 15 33 33 H 1.08005 * 119.93886 * 180.16068 * 20 19 18 34 34 H 1.08997 * 110.74571 * 90.58414 * 22 21 19 35 35 H 1.08996 * 110.73930 * 213.73489 * 22 21 19 36 36 H 1.08996 * 110.93910 * 46.08961 * 23 18 17 37 37 H 1.09004 * 110.93962 * 282.40197 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2117 0.0000 4 6 3.5542 1.2248 0.0057 5 6 4.2373 -0.0101 -0.0001 6 6 5.6455 -0.0536 -0.0008 7 1 6.1600 -0.8927 0.4439 8 6 6.3782 0.9912 -0.5781 9 7 5.7703 1.8922 -1.3053 10 14 8.2237 1.0975 -0.3094 11 1 8.6657 -0.0345 0.5439 12 1 8.9194 1.0302 -1.6197 13 1 8.5532 2.3812 0.3605 14 6 3.4752 -1.2066 -0.0058 15 6 4.1582 -2.5176 -0.0113 16 6 5.2523 -2.7315 -0.8535 17 6 5.8896 -3.9556 -0.8461 18 6 5.4421 -4.9655 -0.0197 19 6 4.3478 -4.7752 0.8171 20 6 3.7065 -3.5421 0.8188 21 8 4.0708 -5.9017 1.5301 22 6 5.2253 -6.7583 1.5307 23 6 5.9310 -6.3838 0.2059 24 7 2.1506 -1.1495 -0.0054 25 1 -0.3634 -0.0049 1.0276 26 1 -0.3634 -0.8875 -0.5180 27 1 -0.3633 0.8924 -0.5097 28 1 1.6348 2.1408 -0.0004 29 1 4.0983 2.1577 0.0100 30 1 6.2777 2.6160 -1.7048 31 1 5.5999 -1.9421 -1.5033 32 1 6.7378 -4.1251 -1.4928 33 1 2.8567 -3.3773 1.4648 34 1 5.8667 -6.5412 2.3849 35 1 4.9279 -7.8069 1.5298 36 1 7.0146 -6.4085 0.3213 37 1 5.6119 -7.0394 -0.6044 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241212998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:53 Heat of formation + Delta-G solvation = -5.485595 kcal Electronic energy + Delta-G solvation = -21109.936347 eV Core-core repulsion = 18008.933000 eV Total energy + Delta-G solvation = -3101.003347 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.89125 -40.48220 -38.13810 -36.13735 -34.10150 -32.89520 -32.44185 -30.98737 -29.91746 -29.25836 -26.19150 -24.65295 -23.52523 -22.97617 -22.34801 -21.64891 -19.27721 -18.16432 -17.54921 -17.36392 -17.00769 -16.72551 -16.01144 -15.75732 -15.28845 -15.02448 -14.58498 -14.33092 -14.17306 -13.91449 -13.68703 -13.55509 -13.30208 -13.15877 -13.03445 -12.78262 -12.64997 -12.63283 -12.41894 -12.19400 -11.83312 -11.62361 -11.50408 -11.18838 -10.27590 -9.97006 -9.81315 -9.24319 -8.89187 -8.65384 -6.39665 0.11821 0.54600 0.84326 1.14589 1.38582 1.48589 1.53189 2.17312 2.39769 2.68435 2.87010 3.57632 3.63464 3.76626 3.86391 4.06555 4.24716 4.34172 4.43975 4.54234 4.56665 4.60931 4.64027 4.73743 4.88808 4.94759 4.96080 4.98241 5.03912 5.18306 5.19374 5.23145 5.31901 5.45955 5.54948 5.70897 5.74649 5.86838 6.01233 6.06052 6.34221 6.49799 6.72527 6.78767 7.70682 8.23703 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.007020 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.695211 B = 3987.872734 C = 5897.889274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.018 4.018 3 C -0.147 4.147 4 C -0.146 4.146 5 C 0.056 3.944 6 C -0.455 4.455 7 H 0.084 0.916 8 C 0.038 3.962 9 N -0.818 5.818 10 Si 0.979 3.021 11 H -0.257 1.257 12 H -0.262 1.262 13 H -0.264 1.264 14 C -0.003 4.003 15 C 0.031 3.969 16 C -0.131 4.131 17 C -0.073 4.073 18 C -0.190 4.190 19 C 0.085 3.915 20 C -0.145 4.145 21 O -0.330 6.330 22 C 0.044 3.956 23 C -0.097 4.097 24 N -0.470 5.470 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.120 0.880 30 H 0.293 0.707 31 H 0.123 0.877 32 H 0.152 0.848 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.134 0.866 36 H 0.113 0.887 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.721 -9.427 1.439 10.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.160 4.160 3 C -0.166 4.166 4 C -0.172 4.172 5 C 0.051 3.949 6 C -0.484 4.484 7 H 0.102 0.898 8 C -0.178 4.178 9 N -0.443 5.443 10 Si 0.799 3.201 11 H -0.180 1.180 12 H -0.186 1.186 13 H -0.189 1.189 14 C -0.140 4.140 15 C 0.030 3.970 16 C -0.150 4.150 17 C -0.091 4.091 18 C -0.192 4.192 19 C 0.040 3.960 20 C -0.164 4.164 21 O -0.245 6.245 22 C -0.030 4.030 23 C -0.133 4.133 24 N -0.179 5.179 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.147 0.853 29 H 0.138 0.862 30 H 0.104 0.896 31 H 0.141 0.859 32 H 0.170 0.830 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.152 0.848 36 H 0.132 0.868 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.081 -10.052 1.409 10.607 hybrid contribution 0.960 1.471 0.013 1.757 sum 4.041 -8.581 1.422 9.590 Atomic orbital electron populations 1.20351 0.88059 1.02294 1.01954 1.21112 0.97302 0.88085 1.09514 1.21591 0.94973 0.98561 1.01520 1.21510 0.93665 0.98453 1.03569 1.18672 0.95139 0.91293 0.89777 1.19720 0.90866 1.05538 1.32261 0.89790 1.26773 1.05901 0.93204 0.91931 1.69788 1.40603 1.11402 1.22539 0.85176 0.75758 0.79604 0.79512 1.18027 1.18599 1.18881 1.19847 0.88761 0.92198 1.13223 1.18141 0.94213 0.90486 0.94191 1.21290 0.96190 0.97683 0.99809 1.20424 0.99786 0.90716 0.98172 1.21178 0.99492 0.98081 1.00404 1.19433 0.95910 0.87254 0.93395 1.20225 1.02497 0.90483 1.03243 1.86769 1.39009 1.27732 1.70978 1.24163 0.85156 0.95654 0.98058 1.21836 1.02905 0.90424 0.98177 1.66965 1.09756 1.30333 1.10819 0.91448 0.92467 0.90264 0.85280 0.86205 0.89629 0.85925 0.83013 0.87757 0.89806 0.84775 0.86836 0.87873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.44 10.15 71.24 0.72 -1.72 16 2 C -0.02 -0.84 6.79 42.72 0.29 -0.55 16 3 C -0.15 -6.81 9.64 22.10 0.21 -6.60 16 4 C -0.15 -7.57 8.71 22.66 0.20 -7.37 16 5 C 0.06 3.00 5.54 -21.02 -0.12 2.88 16 6 C -0.45 -23.29 6.73 23.36 0.16 -23.13 16 7 H 0.08 4.26 6.50 -2.91 -0.02 4.24 16 8 C 0.04 1.80 5.27 85.29 0.45 2.25 16 9 N -0.82 -40.16 10.90 21.85 0.24 -39.92 16 10 Si 0.98 35.95 29.58 68.60 2.03 37.98 16 11 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 12 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 13 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 14 C 0.00 -0.16 6.42 42.47 0.27 0.12 16 15 C 0.03 1.46 5.24 -20.11 -0.11 1.36 16 16 C -0.13 -5.58 7.86 22.57 0.18 -5.40 16 17 C -0.07 -2.49 10.02 22.15 0.22 -2.27 16 18 C -0.19 -6.14 6.28 -19.41 -0.12 -6.27 16 19 C 0.08 3.22 7.02 22.65 0.16 3.38 16 20 C -0.14 -6.47 9.66 22.72 0.22 -6.25 16 21 O -0.33 -10.94 11.10 -95.46 -1.06 -12.00 16 22 C 0.04 0.91 8.01 72.56 0.58 1.50 16 23 C -0.10 -2.02 7.12 30.75 0.22 -1.80 16 24 N -0.47 -24.24 10.05 -171.14 -1.72 -25.96 16 25 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 27 H 0.08 2.36 8.07 -2.39 -0.02 2.34 16 28 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 29 H 0.12 6.28 6.33 -2.91 -0.02 6.26 16 30 H 0.29 12.89 8.29 -92.71 -0.77 12.12 16 31 H 0.12 5.56 6.78 -2.91 -0.02 5.54 16 32 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 33 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -64.25 312.40 4.11 -60.13 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 1.09 Total: 29.65 kcal Atomic # 6 Polarization: -53.42 SS G_CDS: 3.54 Total: -49.88 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: -1.48 Total: -65.88 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -1.06 Total: -12.00 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 2.03 Total: 37.98 kcal Total: -64.25 4.11 -60.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241212998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.648 kcal (2) G-P(sol) polarization free energy of solvation -64.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds