Wall clock time and date at job start Tue Mar 31 2020 05:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31254 * 119.79638 * 2 1 4 4 C 1.33077 * 121.71333 * 180.02562 * 3 2 1 5 5 C 1.47802 * 119.45554 * 179.72374 * 4 3 2 6 6 C 1.39459 * 120.04188 * 179.97438 * 5 4 3 7 7 C 1.37845 * 120.18682 * 180.02562 * 6 5 4 8 8 C 1.38621 * 119.95196 * 0.19933 * 7 6 5 9 9 C 1.37771 * 120.30895 * 359.93578 * 8 7 6 10 10 C 1.38768 * 120.86634 * 359.41033 * 9 8 7 11 11 O 1.35960 * 111.30749 * 180.82698 * 10 9 8 12 12 C 1.43780 * 109.31890 * 341.27946 * 11 10 9 13 13 C 1.51681 * 132.11457 * 179.43734 * 9 8 7 14 14 C 1.39977 * 121.08689 * 359.97438 * 4 3 2 15 15 C 1.36556 * 119.46554 * 359.97438 * 14 4 3 16 16 C 1.40948 * 119.79287 * 179.97438 * 2 1 3 17 17 C 1.41025 * 120.55164 * 359.96893 * 16 2 1 18 18 H 1.08001 * 119.99668 * 24.93507 * 17 16 2 19 19 C 1.40000 * 120.00456 * 204.93145 * 17 16 2 20 20 N 1.30809 * 120.00072 * 14.74798 * 19 17 16 21 21 Si 1.86797 * 120.00214 * 194.74884 * 19 17 16 22 22 H 1.48500 * 109.47240 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47251 * 119.99938 * 21 19 17 24 24 H 1.48500 * 109.47490 * 240.00191 * 21 19 17 25 25 H 1.08995 * 109.47444 * 89.99769 * 1 2 3 26 26 H 1.08999 * 109.47412 * 210.00068 * 1 2 3 27 27 H 1.09008 * 109.46516 * 329.99516 * 1 2 3 28 28 H 1.08001 * 119.91047 * 0.02562 * 6 5 4 29 29 H 1.07996 * 120.02840 * 180.22191 * 7 6 5 30 30 H 1.08008 * 119.84466 * 179.97438 * 8 7 6 31 31 H 1.09002 * 110.75128 * 269.22021 * 12 11 10 32 32 H 1.08995 * 110.76178 * 145.84752 * 12 11 10 33 33 H 1.08998 * 110.93591 * 313.63970 * 13 9 8 34 34 H 1.08998 * 110.94183 * 77.29724 * 13 9 8 35 35 H 1.08000 * 120.27197 * 180.02562 * 14 4 3 36 36 H 1.08002 * 120.79292 * 179.97438 * 15 14 4 37 37 H 0.96994 * 120.00632 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1390 0.0000 4 6 3.4893 1.1835 -0.0005 5 6 4.1726 2.4941 -0.0067 6 6 5.5659 2.5550 -0.0067 7 6 6.2063 3.7756 -0.0120 8 6 5.4643 4.9465 -0.0130 9 6 4.0874 4.8971 -0.0102 10 6 3.4187 3.6812 -0.0185 11 8 2.0708 3.8589 -0.0322 12 6 1.7626 5.1945 0.4018 13 6 3.0306 5.9850 0.0007 14 6 4.2517 0.0096 -0.0005 15 6 3.6205 -1.2013 0.0005 16 6 2.2073 -1.2232 0.0005 17 6 1.5096 -2.4487 0.0018 18 1 0.5052 -2.4986 -0.3921 19 6 2.1188 -3.6007 0.5134 20 7 3.1991 -3.4998 1.2440 21 14 1.3891 -5.2820 0.1526 22 1 0.1766 -5.1249 -0.6903 23 1 2.3883 -6.1111 -0.5680 24 1 1.0223 -5.9467 1.4289 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5140 28 1 6.1448 1.6433 -0.0027 29 1 7.2853 3.8198 -0.0156 30 1 5.9678 5.9020 -0.0167 31 1 1.6136 5.2252 1.4811 32 1 0.8867 5.5783 -0.1212 33 1 3.2649 6.7483 0.7427 34 1 2.9174 6.4281 -0.9888 35 1 5.3305 0.0611 -0.0005 36 1 4.1877 -2.1204 0.0001 37 1 3.6211 -4.2978 1.5988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242008506.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:57 Heat of formation + Delta-G solvation = -2.392954 kcal Electronic energy + Delta-G solvation = -21062.278264 eV Core-core repulsion = 17961.409025 eV Total energy + Delta-G solvation = -3100.869240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.85116 -40.29237 -38.15796 -36.08472 -34.28019 -32.99165 -32.41953 -30.67824 -30.06430 -28.69258 -26.77577 -24.51770 -23.70871 -23.09237 -22.08813 -21.22464 -19.27342 -18.24185 -17.73911 -17.06614 -17.00184 -16.71485 -16.13359 -15.55982 -15.49616 -14.96221 -14.33167 -14.30731 -14.04987 -13.81030 -13.63631 -13.50837 -13.37100 -13.32193 -12.88159 -12.77822 -12.64318 -12.51060 -12.42516 -12.18116 -11.72712 -11.62327 -11.54230 -11.25393 -10.25275 -10.00857 -9.83077 -9.18907 -8.80405 -8.61957 -6.38100 0.06088 0.51262 0.97309 1.16328 1.38773 1.54185 1.56523 2.16240 2.55963 2.66443 3.01026 3.58499 3.72192 3.73455 3.82593 4.06230 4.22435 4.35538 4.39886 4.53162 4.55831 4.58161 4.67080 4.77213 4.90458 4.93928 4.96518 4.99055 5.03446 5.10192 5.20158 5.27615 5.48604 5.50231 5.54821 5.62844 5.83424 5.90748 5.99560 6.05871 6.46622 6.50230 6.70984 6.79478 7.79696 8.19450 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029117 B = 0.004550 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.399525 B = 6153.000971 C = 7013.197229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.021 4.021 3 N -0.448 5.448 4 C -0.008 4.008 5 C -0.052 4.052 6 C -0.106 4.106 7 C -0.140 4.140 8 C -0.085 4.085 9 C -0.187 4.187 10 C 0.090 3.910 11 O -0.309 6.309 12 C 0.033 3.967 13 C -0.095 4.095 14 C -0.138 4.138 15 C -0.162 4.162 16 C 0.041 3.959 17 C -0.459 4.459 18 H 0.093 0.907 19 C 0.032 3.968 20 N -0.814 5.814 21 Si 0.990 3.010 22 H -0.253 1.253 23 H -0.264 1.264 24 H -0.264 1.264 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.134 0.866 29 H 0.160 0.840 30 H 0.157 0.843 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.819 11.663 -1.156 12.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.166 4.166 3 N -0.156 5.156 4 C -0.143 4.143 5 C -0.054 4.054 6 C -0.125 4.125 7 C -0.158 4.158 8 C -0.103 4.103 9 C -0.188 4.188 10 C 0.044 3.956 11 O -0.223 6.223 12 C -0.041 4.041 13 C -0.131 4.131 14 C -0.158 4.158 15 C -0.187 4.187 16 C 0.036 3.964 17 C -0.487 4.487 18 H 0.111 0.889 19 C -0.184 4.184 20 N -0.438 5.438 21 Si 0.810 3.190 22 H -0.176 1.176 23 H -0.188 1.188 24 H -0.189 1.189 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.151 0.849 29 H 0.177 0.823 30 H 0.175 0.825 31 H 0.091 0.909 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.119 0.881 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.333 12.157 -1.063 12.424 hybrid contribution 0.296 -1.785 0.098 1.812 sum 2.629 10.372 -0.965 10.743 Atomic orbital electron populations 1.20193 0.89042 1.01415 1.01103 1.21618 0.96959 0.88006 1.09968 1.67027 1.09099 1.30003 1.09514 1.19360 0.89276 0.92194 1.13425 1.18304 0.92956 0.89056 1.05035 1.21141 0.91108 0.99844 1.00419 1.21237 1.01166 0.90810 1.02598 1.20662 0.90915 0.99775 0.98916 1.21221 0.96002 0.93905 1.07670 1.19842 0.83772 0.94183 0.97845 1.87003 1.19517 1.33964 1.81786 1.24132 0.99700 0.79525 1.00782 1.21801 0.90400 0.96422 1.04523 1.21557 0.99842 0.92971 1.01404 1.21396 0.94985 0.96974 1.05377 1.18806 0.93153 0.94223 0.90205 1.19939 1.02007 0.92530 1.34238 0.88895 1.26970 0.94465 1.05441 0.91566 1.69835 1.17772 1.33653 1.22552 0.85021 0.79486 0.75134 0.79344 1.17595 1.18820 1.18887 0.92255 0.91273 0.92636 0.84877 0.82251 0.82495 0.90850 0.85994 0.86668 0.88083 0.85683 0.86223 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.70 9.58 71.24 0.68 -2.01 16 2 C -0.02 -1.12 6.86 43.31 0.30 -0.82 16 3 N -0.45 -24.29 8.74 -171.03 -1.49 -25.79 16 4 C -0.01 -0.39 6.74 41.91 0.28 -0.10 16 5 C -0.05 -2.27 5.90 -19.87 -0.12 -2.39 16 6 C -0.11 -3.72 9.39 22.47 0.21 -3.50 16 7 C -0.14 -3.75 10.05 22.27 0.22 -3.53 16 8 C -0.08 -2.14 10.03 22.25 0.22 -1.91 16 9 C -0.19 -5.65 6.27 -19.54 -0.12 -5.78 16 10 C 0.09 3.63 6.72 22.98 0.15 3.79 16 11 O -0.31 -12.64 9.91 -93.10 -0.92 -13.56 16 12 C 0.03 0.89 8.01 72.56 0.58 1.47 16 13 C -0.09 -2.08 7.12 30.74 0.22 -1.86 16 14 C -0.14 -6.91 9.38 22.30 0.21 -6.70 16 15 C -0.16 -8.80 8.73 22.64 0.20 -8.61 16 16 C 0.04 2.26 5.59 -21.17 -0.12 2.14 16 17 C -0.46 -23.87 8.16 23.38 0.19 -23.68 16 18 H 0.09 4.56 6.84 -2.91 -0.02 4.54 16 19 C 0.03 1.56 5.22 85.27 0.45 2.01 16 20 N -0.81 -41.04 10.83 21.84 0.24 -40.81 16 21 Si 0.99 36.17 29.58 68.60 2.03 38.20 16 22 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 23 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 24 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.07 2.98 6.75 -2.39 -0.02 2.96 16 27 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 28 H 0.13 4.34 6.12 -2.91 -0.02 4.32 16 29 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 30 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.13 5.38 6.13 -2.91 -0.02 5.36 16 36 H 0.12 6.54 6.17 -2.91 -0.02 6.52 16 37 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 Total: -1.00 -68.83 309.38 4.51 -64.32 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 1.10 Total: 29.14 kcal Atomic # 6 Polarization: -55.06 SS G_CDS: 3.56 Total: -51.51 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: -1.26 Total: -66.60 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.92 Total: -13.56 kcal Atomic # 14 Polarization: 36.17 SS G_CDS: 2.03 Total: 38.20 kcal Total: -68.83 4.51 -64.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242008506.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.928 kcal (2) G-P(sol) polarization free energy of solvation -68.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds