Wall clock time and date at job start Tue Mar 31 2020 05:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38868 * 119.24350 * 2 1 4 4 C 1.36885 * 119.81689 * 179.97438 * 3 2 1 5 5 C 1.41115 * 118.40000 * 359.97438 * 4 3 2 6 6 C 1.40846 * 120.71891 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99667 * 150.71416 * 6 5 4 8 8 C 1.40045 * 120.00194 * 330.71230 * 6 5 4 9 9 N 1.30792 * 120.00109 * 163.05508 * 8 6 5 10 10 Si 1.86798 * 120.00223 * 343.05368 * 8 6 5 11 11 H 1.48496 * 109.47205 * 90.38058 * 10 8 6 12 12 H 1.48504 * 109.47322 * 210.38624 * 10 8 6 13 13 H 1.48505 * 109.46957 * 330.38280 * 10 8 6 14 14 C 1.41940 * 118.55412 * 0.02562 * 5 4 3 15 15 C 1.47646 * 119.99576 * 179.97438 * 14 5 4 16 16 C 1.39531 * 120.05229 * 310.50833 * 15 14 5 17 17 C 1.37826 * 120.17678 * 179.97438 * 16 15 14 18 18 C 1.38635 * 119.96648 * 359.81836 * 17 16 15 19 19 C 1.37780 * 120.32086 * 0.02562 * 18 17 16 20 20 C 1.38751 * 120.87122 * 0.32437 * 19 18 17 21 21 O 1.35956 * 111.32101 * 178.96307 * 20 19 18 22 22 C 1.43877 * 109.25641 * 19.01634 * 21 20 19 23 23 C 1.51677 * 132.11770 * 180.37006 * 19 18 17 24 24 N 1.31736 * 119.23964 * 180.25379 * 2 1 3 25 25 H 1.09002 * 109.47133 * 90.00255 * 1 2 3 26 26 H 1.09005 * 109.47265 * 210.00423 * 1 2 3 27 27 H 1.09002 * 109.47103 * 330.00286 * 1 2 3 28 28 H 1.08003 * 120.09666 * 359.97438 * 3 2 1 29 29 H 1.08005 * 120.79865 * 179.97438 * 4 3 2 30 30 H 0.97001 * 120.00483 * 180.02562 * 9 8 6 31 31 H 1.08004 * 119.91322 * 359.97438 * 16 15 14 32 32 H 1.07995 * 120.01630 * 179.87136 * 17 16 15 33 33 H 1.07993 * 119.83957 * 179.97438 * 18 17 16 34 34 H 1.09001 * 110.78233 * 213.97833 * 22 21 20 35 35 H 1.08997 * 110.76702 * 90.57694 * 22 21 20 36 36 H 1.08998 * 110.94356 * 282.73845 * 23 19 18 37 37 H 1.08998 * 110.94060 * 46.39658 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2117 0.0000 4 6 3.5542 1.2254 0.0005 5 6 4.2377 -0.0091 0.0016 6 6 5.6455 -0.0520 0.0017 7 1 6.1604 -0.8835 0.4599 8 6 6.3777 0.9834 -0.5925 9 7 7.6480 1.1279 -0.3168 10 14 5.5401 2.1581 -1.7791 11 1 4.9983 3.3184 -1.0272 12 1 6.5258 2.6348 -2.7823 13 1 4.4302 1.4548 -2.4711 14 6 3.4757 -1.2066 0.0016 15 6 4.1581 -2.5159 0.0021 16 6 5.1772 -2.7731 -0.9157 17 6 5.8163 -3.9942 -0.9171 18 6 5.4493 -4.9690 -0.0022 19 6 4.4465 -4.7241 0.9104 20 6 3.7822 -3.5061 0.9285 21 8 2.8188 -3.4827 1.8875 22 6 3.0814 -4.5199 2.8494 23 6 3.8449 -5.5741 2.0132 24 7 2.1505 -1.1495 -0.0051 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6346 2.1407 -0.0004 29 1 4.0979 2.1586 0.0001 30 1 8.1551 1.8453 -0.7280 31 1 5.4659 -2.0133 -1.6269 32 1 6.6033 -4.1912 -1.6299 33 1 5.9512 -5.9252 -0.0054 34 1 2.1501 -4.9340 3.2357 35 1 3.7050 -4.1454 3.6611 36 1 3.1602 -6.3166 1.6032 37 1 4.6247 -6.0516 2.6064 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242008591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:00 Heat of formation + Delta-G solvation = 14.847575 kcal Electronic energy + Delta-G solvation = -21582.984396 eV Core-core repulsion = 18482.862762 eV Total energy + Delta-G solvation = -3100.121634 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.51495 -38.73489 -36.70308 -34.23426 -32.84074 -31.68389 -31.06430 -29.01365 -28.75875 -27.79376 -24.44208 -23.04210 -22.42281 -21.45426 -21.01156 -19.80460 -17.51595 -16.80712 -16.28917 -15.80839 -15.73321 -15.00072 -14.76714 -14.18037 -13.60501 -13.50039 -13.20834 -12.98289 -12.70800 -12.62714 -12.22846 -12.08352 -11.90037 -11.75622 -11.53678 -11.39307 -11.14492 -11.11322 -10.79080 -10.52508 -10.40576 -10.23216 -9.87081 -9.50949 -8.64541 -8.25415 -8.00405 -7.74969 -7.25741 -7.11821 -4.58804 1.73126 1.98333 2.44407 2.70011 2.98557 3.09320 3.19605 3.81229 3.82497 4.29539 4.45291 4.76052 4.93810 5.20161 5.26897 5.30143 5.50715 5.62964 5.67103 5.85564 5.87710 5.93684 5.98915 6.08902 6.17589 6.22856 6.33317 6.35511 6.45802 6.61585 6.63732 6.84603 6.90408 6.98273 7.09299 7.20031 7.29339 7.42754 7.58235 7.78175 7.84541 8.16719 8.41101 8.57654 9.44625 9.87771 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015269 B = 0.007713 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.365616 B = 3629.141137 C = 4952.453316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.016 4.016 3 C -0.115 4.115 4 C -0.211 4.211 5 C 0.060 3.940 6 C -0.423 4.423 7 H 0.101 0.899 8 C 0.084 3.916 9 N -0.792 5.792 10 Si 0.910 3.090 11 H -0.267 1.267 12 H -0.287 1.287 13 H -0.246 1.246 14 C 0.044 3.956 15 C 0.000 4.000 16 C -0.053 4.053 17 C -0.155 4.155 18 C -0.085 4.085 19 C -0.192 4.192 20 C 0.120 3.880 21 O -0.288 6.288 22 C 0.047 3.953 23 C -0.104 4.104 24 N -0.429 5.429 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.289 0.711 31 H 0.137 0.863 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 -6.995 1.062 8.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.155 4.155 3 C -0.135 4.135 4 C -0.236 4.236 5 C 0.055 3.945 6 C -0.451 4.451 7 H 0.119 0.881 8 C -0.137 4.137 9 N -0.414 5.414 10 Si 0.736 3.264 11 H -0.193 1.193 12 H -0.214 1.214 13 H -0.169 1.169 14 C -0.097 4.097 15 C -0.001 4.001 16 C -0.072 4.072 17 C -0.174 4.174 18 C -0.103 4.103 19 C -0.193 4.193 20 C 0.073 3.927 21 O -0.201 6.201 22 C -0.028 4.028 23 C -0.141 4.141 24 N -0.137 5.137 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.121 0.879 29 H 0.130 0.870 30 H 0.099 0.901 31 H 0.154 0.846 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.271 -7.496 1.090 8.695 hybrid contribution 0.492 1.386 -0.300 1.501 sum -3.779 -6.110 0.790 7.227 Atomic orbital electron populations 1.20278 0.91205 1.01063 1.00546 1.20272 0.95101 0.88251 1.11908 1.21169 0.94792 0.97571 1.00007 1.21174 0.94079 0.97556 1.10796 1.18424 0.94398 0.90977 0.90665 1.19459 0.89448 1.06125 1.30027 0.88140 1.26221 0.94777 0.96535 0.96215 1.69658 1.08865 1.28377 1.34532 0.86372 0.79657 0.80371 0.79965 1.19293 1.21444 1.16947 1.19303 0.88212 0.90910 1.11278 1.17665 0.96478 0.90503 0.95489 1.21099 0.93262 0.96233 0.96643 1.20842 1.01925 0.93980 1.00605 1.20142 0.96266 0.98994 0.94906 1.20590 1.01697 0.95185 1.01799 1.19606 0.88826 0.93271 0.90949 1.86936 1.44405 1.53882 1.34887 1.23779 1.00515 0.86793 0.91754 1.21693 0.99440 0.97806 0.95147 1.66966 1.09454 1.29060 1.08235 0.93121 0.92333 0.92856 0.87898 0.87011 0.90058 0.84552 0.86027 0.86810 0.88353 0.91154 0.89905 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.15 36.01 0.37 -0.94 16 2 C -0.02 -0.37 6.79 -82.40 -0.56 -0.93 16 3 C -0.12 -2.56 9.64 -39.84 -0.38 -2.95 16 4 C -0.21 -5.09 7.31 -38.98 -0.28 -5.38 16 5 C 0.06 1.54 5.13 -106.40 -0.55 1.00 16 6 C -0.42 -10.91 7.52 -37.92 -0.29 -11.19 16 7 H 0.10 2.75 6.94 -52.49 -0.36 2.38 16 8 C 0.08 2.07 5.44 -17.32 -0.09 1.98 16 9 N -0.79 -19.88 13.93 55.55 0.77 -19.11 16 10 Si 0.91 19.89 24.53 -169.99 -4.17 15.72 16 11 H -0.27 -5.67 6.46 56.52 0.37 -5.30 16 12 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 13 H -0.25 -5.60 6.99 56.52 0.40 -5.21 16 14 C 0.04 1.11 6.32 -82.26 -0.52 0.59 16 15 C 0.00 0.00 5.10 -104.64 -0.53 -0.53 16 16 C -0.05 -1.11 8.00 -39.25 -0.31 -1.42 16 17 C -0.16 -2.71 10.05 -39.59 -0.40 -3.11 16 18 C -0.08 -1.38 10.03 -39.60 -0.40 -1.78 16 19 C -0.19 -3.38 6.27 -104.12 -0.65 -4.03 16 20 C 0.12 2.53 6.74 -38.46 -0.26 2.27 16 21 O -0.29 -5.91 11.06 -19.60 -0.22 -6.13 16 22 C 0.05 0.68 8.02 38.06 0.31 0.99 16 23 C -0.10 -1.40 7.12 -26.50 -0.19 -1.59 16 24 N -0.43 -10.64 10.13 -5.47 -0.06 -10.70 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 28 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 29 H 0.11 2.62 4.51 -52.48 -0.24 2.38 16 30 H 0.29 6.55 8.30 -40.82 -0.34 6.21 16 31 H 0.14 2.88 7.24 -52.48 -0.38 2.50 16 32 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 307.90 15.07 4.64 4.64 Total: -1.00 -29.41 307.90 -8.16 -37.57 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.38 Total: 5.02 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -4.75 Total: -27.02 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: 0.72 Total: -29.80 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.22 Total: -6.13 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.17 Total: 15.72 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.41 -8.16 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242008591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.416 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds