Wall clock time and date at job start Tue Mar 31 2020 05:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21256 * 119.99792 * 2 1 4 4 C 1.47304 * 120.00261 * 180.27043 * 2 1 3 5 5 C 1.39793 * 119.58715 * 179.72797 * 4 2 1 6 6 C 1.38125 * 119.19074 * 179.97438 * 5 4 2 7 7 C 1.40082 * 118.38253 * 359.97438 * 6 5 4 8 8 C 1.47800 * 120.44394 * 179.97438 * 7 6 5 9 9 C 1.40057 * 119.88912 * 309.72784 * 8 7 6 10 10 C 1.36189 * 120.11575 * 179.71877 * 9 8 7 11 11 C 1.40993 * 119.88068 * 0.55509 * 10 9 8 12 12 C 1.40939 * 120.11000 * 179.74439 * 11 10 9 13 13 H 1.08000 * 119.99980 * 204.66612 * 12 11 10 14 14 C 1.40140 * 120.00157 * 24.65495 * 12 11 10 15 15 N 1.30713 * 119.99926 * 17.94359 * 14 12 11 16 16 Si 1.86798 * 120.00250 * 197.94420 * 14 12 11 17 17 H 1.48506 * 109.46812 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47598 * 119.99935 * 16 14 12 19 19 H 1.48508 * 109.47166 * 240.00393 * 16 14 12 20 20 C 1.40962 * 119.78004 * 359.71622 * 11 10 9 21 21 C 1.36221 * 119.88300 * 0.02562 * 20 11 10 22 22 C 1.50703 * 119.94279 * 179.97438 * 21 20 11 23 23 C 1.40079 * 119.11080 * 0.02562 * 7 6 5 24 24 N 1.31189 * 120.71951 * 359.74549 * 23 7 6 25 25 H 1.08996 * 109.47541 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47255 * 120.00883 * 1 2 3 27 27 H 1.09000 * 109.46901 * 240.00184 * 1 2 3 28 28 H 1.08002 * 120.40610 * 359.94867 * 5 4 2 29 29 H 1.08003 * 120.80838 * 180.02562 * 6 5 4 30 30 H 1.08010 * 119.94112 * 359.97438 * 9 8 7 31 31 H 1.07998 * 120.05786 * 180.24945 * 10 9 8 32 32 H 0.97000 * 120.00426 * 179.97438 * 15 14 12 33 33 H 1.08000 * 120.06077 * 180.02562 * 20 11 10 34 34 H 1.09003 * 109.46611 * 270.01912 * 22 21 20 35 35 H 1.08994 * 109.46999 * 30.01568 * 22 21 20 36 36 H 1.08997 * 109.47570 * 150.02234 * 22 21 20 37 37 H 1.07997 * 119.63964 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2436 -1.2756 -0.0060 5 6 3.6414 -1.2655 -0.0117 6 6 4.3238 -2.4664 -0.0168 7 6 3.5813 -3.6542 -0.0155 8 6 4.2648 -4.9647 -0.0213 9 6 5.2711 -5.2228 -0.9606 10 6 5.9079 -6.4266 -0.9665 11 6 5.5444 -7.4181 -0.0323 12 6 6.1965 -8.6676 -0.0375 13 1 5.6987 -9.5381 0.3634 14 6 7.4906 -8.7803 -0.5631 15 7 8.2269 -7.7120 -0.7221 16 14 8.1637 -10.4573 -1.0365 17 1 7.1404 -11.4974 -0.7599 18 1 8.5001 -10.4655 -2.4829 19 1 9.3858 -10.7424 -0.2424 20 6 4.5270 -7.1554 0.9073 21 6 3.8998 -5.9461 0.9083 22 6 2.8115 -5.6640 1.9118 23 6 2.1823 -3.5833 -0.0096 24 7 1.5701 -2.4231 -0.0004 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3634 -0.5140 -0.8899 27 1 -0.3633 -0.5138 0.8900 28 1 4.1813 -0.3301 -0.0126 29 1 5.4036 -2.4890 -0.0209 30 1 5.5455 -4.4643 -1.6790 31 1 6.6865 -6.6232 -1.6886 32 1 9.1228 -7.7901 -1.0856 33 1 4.2452 -7.9114 1.6252 34 1 1.8482 -5.9593 1.4958 35 1 3.0024 -6.2300 2.8235 36 1 2.7966 -4.5987 2.1419 37 1 1.6014 -4.4938 -0.0090 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242401391.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:05 Heat of formation + Delta-G solvation = -0.467384 kcal Electronic energy + Delta-G solvation = -20361.800598 eV Core-core repulsion = 17261.014857 eV Total energy + Delta-G solvation = -3100.785741 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.25245 -38.77923 -37.67286 -34.44800 -32.64805 -31.89930 -31.10402 -30.33881 -28.89736 -26.05832 -25.78174 -23.63768 -22.80849 -20.85881 -20.16213 -19.88284 -17.18610 -16.96834 -16.23199 -15.82884 -15.33112 -15.10445 -14.39149 -14.28720 -14.07100 -13.90313 -13.27564 -13.11120 -12.91335 -12.66935 -12.48476 -12.20052 -12.12633 -12.07968 -11.69639 -11.62428 -11.22301 -11.13989 -10.69907 -10.60773 -10.04707 -9.97626 -9.70932 -9.59073 -9.38528 -9.17971 -8.68708 -7.65230 -7.34448 -7.04635 -4.57938 0.67237 1.55917 2.25172 2.66004 2.90330 2.93460 2.98227 3.03818 3.72628 3.98169 4.10353 4.38148 4.66803 5.11637 5.25046 5.28612 5.30645 5.46251 5.48164 5.51472 5.73188 5.83677 5.86217 5.94589 6.04576 6.18227 6.19685 6.36646 6.45036 6.54334 6.75271 6.81553 6.91849 7.03703 7.12947 7.39941 7.42052 7.66502 7.82607 7.88631 8.02747 8.14094 8.37854 8.60730 8.72179 9.87296 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.040563 B = 0.003437 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.116670 B = 8143.990489 C = 8599.755680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.416 3.584 3 O -0.467 6.467 4 C -0.010 4.010 5 C -0.102 4.102 6 C -0.110 4.110 7 C 0.012 3.988 8 C -0.220 4.220 9 C -0.068 4.068 10 C -0.174 4.174 11 C 0.123 3.877 12 C -0.443 4.443 13 H 0.084 0.916 14 C 0.074 3.926 15 N -0.774 5.774 16 Si 0.911 3.089 17 H -0.258 1.258 18 H -0.269 1.269 19 H -0.272 1.272 20 C -0.227 4.227 21 C -0.028 4.028 22 C -0.111 4.111 23 C 0.080 3.920 24 N -0.441 5.441 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.285 0.715 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.301 5.293 0.479 9.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.295 3.705 3 O -0.342 6.342 4 C -0.144 4.144 5 C -0.122 4.122 6 C -0.135 4.135 7 C 0.010 3.990 8 C -0.221 4.221 9 C -0.086 4.086 10 C -0.193 4.193 11 C 0.120 3.880 12 C -0.471 4.471 13 H 0.102 0.898 14 C -0.147 4.147 15 N -0.397 5.397 16 Si 0.735 3.265 17 H -0.181 1.181 18 H -0.194 1.194 19 H -0.197 1.197 20 C -0.246 4.246 21 C -0.028 4.028 22 C -0.168 4.168 23 C -0.082 4.082 24 N -0.152 5.152 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.108 0.892 31 H 0.137 0.863 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.650 6.028 0.425 9.749 hybrid contribution 1.505 -0.909 -0.230 1.773 sum -6.145 5.120 0.195 8.001 Atomic orbital electron populations 1.22048 0.93139 1.03736 1.05157 1.22287 0.91899 0.86409 0.69948 1.90517 1.72557 1.33652 1.37425 1.21370 0.91661 0.93671 1.07672 1.22105 0.94400 0.99254 0.96434 1.21794 1.00880 0.91205 0.99587 1.20272 0.93798 0.94264 0.90710 1.17737 1.05950 0.92692 1.05770 1.20419 0.94517 0.96834 0.96847 1.20972 1.02716 0.94207 1.01404 1.17720 0.89495 0.92588 0.88245 1.19782 0.98559 0.95695 1.33081 0.89824 1.26069 0.96923 0.98909 0.92812 1.69775 1.08921 1.30909 1.30113 0.86196 0.79348 0.81774 0.79174 1.18094 1.19405 1.19705 1.20527 1.04599 0.96529 1.02984 1.19072 0.95449 0.93387 0.94891 1.20847 0.97240 1.00888 0.97819 1.23065 0.91823 0.94918 0.98423 1.67450 1.40749 0.97869 1.09092 0.90527 0.88729 0.88734 0.84637 0.84551 0.89215 0.86302 0.90338 0.88539 0.92123 0.92521 0.92830 0.82301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 9.79 36.01 0.35 -1.56 16 2 C 0.42 5.87 7.23 -30.62 -0.22 5.65 16 3 O -0.47 -7.59 17.04 5.58 0.10 -7.49 16 4 C -0.01 -0.15 6.73 -83.07 -0.56 -0.71 16 5 C -0.10 -1.58 9.61 -39.04 -0.38 -1.96 16 6 C -0.11 -1.81 9.66 -38.93 -0.38 -2.19 16 7 C 0.01 0.21 4.72 -104.61 -0.49 -0.29 16 8 C -0.22 -4.46 5.51 -104.64 -0.58 -5.04 16 9 C -0.07 -1.46 9.46 -39.64 -0.38 -1.84 16 10 C -0.17 -4.16 8.63 -39.28 -0.34 -4.50 16 11 C 0.12 3.00 5.57 -106.80 -0.60 2.40 16 12 C -0.44 -10.77 9.03 -37.85 -0.34 -11.12 16 13 H 0.08 1.95 7.91 -52.49 -0.42 1.53 16 14 C 0.07 1.69 5.13 -17.31 -0.09 1.60 16 15 N -0.77 -18.39 10.96 55.56 0.61 -17.78 16 16 Si 0.91 17.08 29.60 -169.99 -5.03 12.05 16 17 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 18 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 20 C -0.23 -5.09 9.36 -39.28 -0.37 -5.46 16 21 C -0.03 -0.56 5.84 -104.68 -0.61 -1.18 16 22 C -0.11 -1.83 8.44 36.01 0.30 -1.52 16 23 C 0.08 1.30 9.07 -17.14 -0.16 1.15 16 24 N -0.44 -6.92 9.76 -9.55 -0.09 -7.01 16 25 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.14 1.92 7.62 -52.49 -0.40 1.52 16 29 H 0.14 2.14 8.06 -52.48 -0.42 1.72 16 30 H 0.09 1.78 8.05 -52.48 -0.42 1.36 16 31 H 0.12 2.94 6.16 -52.49 -0.32 2.62 16 32 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 33 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.06 0.88 7.49 -51.93 -0.39 0.49 16 35 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.05 0.86 6.44 -51.93 -0.33 0.53 16 37 H 0.16 2.39 6.84 -52.49 -0.36 2.03 16 LS Contribution 319.86 15.07 4.82 4.82 Total: -1.00 -25.94 319.86 -8.73 -34.67 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -4.31 Total: 7.28 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -4.82 Total: -26.54 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.52 Total: -24.79 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.10 Total: -7.49 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -25.94 -8.73 -34.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242401391.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.203 kcal (2) G-P(sol) polarization free energy of solvation -25.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds