Wall clock time and date at job start Tue Mar 31 2020 05:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21256 * 119.99792 * 2 1 4 4 C 1.47304 * 120.00261 * 180.27043 * 2 1 3 5 5 C 1.39793 * 119.58715 * 179.72797 * 4 2 1 6 6 C 1.38125 * 119.19074 * 179.97438 * 5 4 2 7 7 C 1.40082 * 118.38253 * 359.97438 * 6 5 4 8 8 C 1.47800 * 120.44394 * 179.97438 * 7 6 5 9 9 C 1.40057 * 119.88912 * 309.72784 * 8 7 6 10 10 C 1.36189 * 120.11575 * 179.71877 * 9 8 7 11 11 C 1.40993 * 119.88068 * 0.55509 * 10 9 8 12 12 C 1.40939 * 120.11000 * 179.74439 * 11 10 9 13 13 H 1.08000 * 119.99980 * 204.66612 * 12 11 10 14 14 C 1.40140 * 120.00157 * 24.65495 * 12 11 10 15 15 N 1.30713 * 119.99926 * 17.94359 * 14 12 11 16 16 Si 1.86798 * 120.00250 * 197.94420 * 14 12 11 17 17 H 1.48506 * 109.46812 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47598 * 119.99935 * 16 14 12 19 19 H 1.48508 * 109.47166 * 240.00393 * 16 14 12 20 20 C 1.40962 * 119.78004 * 359.71622 * 11 10 9 21 21 C 1.36221 * 119.88300 * 0.02562 * 20 11 10 22 22 C 1.50703 * 119.94279 * 179.97438 * 21 20 11 23 23 C 1.40079 * 119.11080 * 0.02562 * 7 6 5 24 24 N 1.31189 * 120.71951 * 359.74549 * 23 7 6 25 25 H 1.08996 * 109.47541 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47255 * 120.00883 * 1 2 3 27 27 H 1.09000 * 109.46901 * 240.00184 * 1 2 3 28 28 H 1.08002 * 120.40610 * 359.94867 * 5 4 2 29 29 H 1.08003 * 120.80838 * 180.02562 * 6 5 4 30 30 H 1.08010 * 119.94112 * 359.97438 * 9 8 7 31 31 H 1.07998 * 120.05786 * 180.24945 * 10 9 8 32 32 H 0.97000 * 120.00426 * 179.97438 * 15 14 12 33 33 H 1.08000 * 120.06077 * 180.02562 * 20 11 10 34 34 H 1.09003 * 109.46611 * 270.01912 * 22 21 20 35 35 H 1.08994 * 109.46999 * 30.01568 * 22 21 20 36 36 H 1.08997 * 109.47570 * 150.02234 * 22 21 20 37 37 H 1.07997 * 119.63964 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2436 -1.2756 -0.0060 5 6 3.6414 -1.2655 -0.0117 6 6 4.3238 -2.4664 -0.0168 7 6 3.5813 -3.6542 -0.0155 8 6 4.2648 -4.9647 -0.0213 9 6 5.2711 -5.2228 -0.9606 10 6 5.9079 -6.4266 -0.9665 11 6 5.5444 -7.4181 -0.0323 12 6 6.1965 -8.6676 -0.0375 13 1 5.6987 -9.5381 0.3634 14 6 7.4906 -8.7803 -0.5631 15 7 8.2269 -7.7120 -0.7221 16 14 8.1637 -10.4573 -1.0365 17 1 7.1404 -11.4974 -0.7599 18 1 8.5001 -10.4655 -2.4829 19 1 9.3858 -10.7424 -0.2424 20 6 4.5270 -7.1554 0.9073 21 6 3.8998 -5.9461 0.9083 22 6 2.8115 -5.6640 1.9118 23 6 2.1823 -3.5833 -0.0096 24 7 1.5701 -2.4231 -0.0004 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3634 -0.5140 -0.8899 27 1 -0.3633 -0.5138 0.8900 28 1 4.1813 -0.3301 -0.0126 29 1 5.4036 -2.4890 -0.0209 30 1 5.5455 -4.4643 -1.6790 31 1 6.6865 -6.6232 -1.6886 32 1 9.1228 -7.7901 -1.0856 33 1 4.2452 -7.9114 1.6252 34 1 1.8482 -5.9593 1.4958 35 1 3.0024 -6.2300 2.8235 36 1 2.7966 -4.5987 2.1419 37 1 1.6014 -4.4938 -0.0090 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242401391.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:04 Heat of formation + Delta-G solvation = -11.808398 kcal Electronic energy + Delta-G solvation = -20362.292381 eV Core-core repulsion = 17261.014857 eV Total energy + Delta-G solvation = -3101.277524 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.54067 -40.11837 -39.19416 -36.08810 -34.04478 -33.40698 -32.54838 -31.59154 -30.24017 -27.61598 -27.29112 -25.02673 -24.14683 -22.43668 -21.79175 -21.16357 -18.89170 -18.20614 -17.56861 -17.31835 -16.89743 -16.25400 -15.72593 -15.59642 -15.44096 -15.41318 -14.72050 -14.49673 -14.24237 -14.07991 -13.93429 -13.74271 -13.27742 -13.14945 -13.00626 -12.98270 -12.73870 -12.71336 -12.24519 -12.16676 -11.58465 -11.35623 -11.27010 -11.13505 -10.83088 -10.46913 -10.10571 -9.35525 -9.01043 -8.73145 -6.37521 -0.60799 0.26361 0.79967 1.15840 1.28488 1.38455 1.52269 1.54196 2.16895 2.61565 2.83252 2.87862 3.47302 3.64738 3.90172 3.96395 4.07790 4.16333 4.28010 4.36619 4.44333 4.63956 4.65580 4.71835 4.72362 4.91800 4.97706 5.05140 5.06706 5.13506 5.19414 5.22043 5.35257 5.43565 5.59389 5.69818 5.97615 6.08322 6.15980 6.29765 6.31330 6.62900 6.84953 6.85590 6.97973 8.21906 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.040563 B = 0.003437 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.116670 B = 8143.990489 C = 8599.755680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.418 3.582 3 O -0.490 6.490 4 C -0.006 4.006 5 C -0.107 4.107 6 C -0.105 4.105 7 C -0.010 4.010 8 C -0.208 4.208 9 C -0.074 4.074 10 C -0.198 4.198 11 C 0.093 3.907 12 C -0.484 4.484 13 H 0.081 0.919 14 C 0.036 3.964 15 N -0.811 5.811 16 Si 0.982 3.018 17 H -0.256 1.256 18 H -0.264 1.264 19 H -0.265 1.265 20 C -0.244 4.244 21 C -0.032 4.032 22 C -0.105 4.105 23 C 0.088 3.912 24 N -0.435 5.435 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.149 0.851 29 H 0.140 0.860 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.292 0.708 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.298 6.457 0.814 11.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.297 3.703 3 O -0.365 6.365 4 C -0.141 4.141 5 C -0.127 4.127 6 C -0.131 4.131 7 C -0.012 4.012 8 C -0.210 4.210 9 C -0.093 4.093 10 C -0.217 4.217 11 C 0.091 3.909 12 C -0.512 4.512 13 H 0.099 0.901 14 C -0.181 4.181 15 N -0.435 5.435 16 Si 0.803 3.197 17 H -0.179 1.179 18 H -0.189 1.189 19 H -0.190 1.190 20 C -0.263 4.263 21 C -0.032 4.032 22 C -0.161 4.161 23 C -0.073 4.073 24 N -0.146 5.146 25 H 0.110 0.890 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.166 0.834 29 H 0.158 0.842 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.667 7.199 0.766 12.077 hybrid contribution 1.952 -0.959 -0.308 2.197 sum -7.715 6.239 0.459 9.932 Atomic orbital electron populations 1.22070 0.89845 1.05213 1.06234 1.22735 0.93515 0.85207 0.68840 1.90523 1.73385 1.34164 1.38470 1.21853 0.91950 0.94521 1.05757 1.22269 0.94740 0.99358 0.96287 1.21883 1.01222 0.91273 0.98680 1.20152 0.94596 0.93224 0.93242 1.17985 1.04757 0.93842 1.04436 1.20619 0.94804 0.96315 0.97527 1.20912 1.03516 0.95442 1.01852 1.18045 0.90632 0.93136 0.89125 1.19973 0.99788 0.95846 1.35624 0.90080 1.26852 0.96661 1.02471 0.92135 1.69821 1.09517 1.32874 1.31300 0.85147 0.78583 0.77118 0.78873 1.17916 1.18876 1.19012 1.20716 1.04794 0.97813 1.02973 1.19491 0.95924 0.92445 0.95343 1.20848 0.96748 1.01415 0.97104 1.23226 0.91153 0.95736 0.97203 1.67549 1.40274 0.97624 1.09164 0.89026 0.87519 0.87401 0.83360 0.84249 0.87951 0.88104 0.89739 0.88055 0.89719 0.91619 0.92238 0.80859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 9.79 71.24 0.70 -2.29 16 2 C 0.42 10.48 7.23 28.07 0.20 10.69 16 3 O -0.49 -14.68 17.04 -2.95 -0.05 -14.73 16 4 C -0.01 -0.18 6.73 41.72 0.28 0.10 16 5 C -0.11 -3.06 9.61 22.62 0.22 -2.85 16 6 C -0.11 -3.30 9.66 22.69 0.22 -3.08 16 7 C -0.01 -0.34 4.72 -19.85 -0.09 -0.43 16 8 C -0.21 -8.34 5.51 -19.87 -0.11 -8.45 16 9 C -0.07 -3.28 9.46 22.23 0.21 -3.07 16 10 C -0.20 -9.93 8.63 22.47 0.19 -9.74 16 11 C 0.09 4.77 5.57 -21.28 -0.12 4.66 16 12 C -0.48 -24.70 9.03 23.39 0.21 -24.49 16 13 H 0.08 3.98 7.91 -2.91 -0.02 3.95 16 14 C 0.04 1.72 5.13 85.32 0.44 2.15 16 15 N -0.81 -40.31 10.96 21.86 0.24 -40.07 16 16 Si 0.98 36.00 29.60 68.60 2.03 38.03 16 17 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 18 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 19 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 20 C -0.24 -11.15 9.36 22.47 0.21 -10.94 16 21 C -0.03 -1.27 5.84 -19.90 -0.12 -1.39 16 22 C -0.10 -3.19 8.44 71.24 0.60 -2.58 16 23 C 0.09 2.62 9.07 85.24 0.77 3.40 16 24 N -0.44 -12.21 9.76 -184.14 -1.80 -14.00 16 25 H 0.09 1.31 8.12 -2.39 -0.02 1.29 16 26 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.15 3.88 7.62 -2.91 -0.02 3.86 16 29 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 30 H 0.10 4.12 8.05 -2.91 -0.02 4.10 16 31 H 0.10 5.32 6.16 -2.91 -0.02 5.30 16 32 H 0.29 13.01 8.29 -92.71 -0.77 12.24 16 33 H 0.10 4.39 8.06 -2.91 -0.02 4.36 16 34 H 0.08 2.19 7.49 -2.39 -0.02 2.17 16 35 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 36 H 0.06 1.74 6.44 -2.39 -0.02 1.73 16 37 H 0.17 4.62 6.84 -2.91 -0.02 4.60 16 Total: -1.00 -57.31 319.86 5.33 -51.98 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 1.09 Total: 27.12 kcal Atomic # 6 Polarization: -52.13 SS G_CDS: 3.82 Total: -48.31 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -1.56 Total: -54.08 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.05 Total: -14.73 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Total: -57.31 5.33 -51.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242401391.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.170 kcal (2) G-P(sol) polarization free energy of solvation -57.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds