Wall clock time and date at job start Tue Mar 31 2020 05:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21246 * 119.99661 * 2 1 4 4 C 1.47300 * 120.00047 * 179.97438 * 2 1 3 5 5 C 1.39795 * 119.58519 * 179.97438 * 4 2 1 6 6 C 1.38130 * 119.19032 * 180.02562 * 5 4 2 7 7 C 1.40081 * 118.38566 * 0.02562 * 6 5 4 8 8 C 1.47785 * 120.45054 * 180.02562 * 7 6 5 9 9 C 1.40066 * 119.88495 * 359.97438 * 8 7 6 10 10 C 1.36187 * 120.11552 * 180.02562 * 9 8 7 11 11 C 1.41002 * 119.88156 * 359.97087 * 10 9 8 12 12 C 1.40938 * 120.10954 * 180.30249 * 11 10 9 13 13 H 1.08005 * 120.00244 * 153.31178 * 12 11 10 14 14 C 1.40145 * 119.99858 * 333.30566 * 12 11 10 15 15 N 1.30713 * 120.00283 * 344.06059 * 14 12 11 16 16 Si 1.86804 * 119.99747 * 164.06055 * 14 12 11 17 17 H 1.48497 * 109.46998 * 90.00074 * 16 14 12 18 18 H 1.48496 * 109.47134 * 209.99944 * 16 14 12 19 19 H 1.48499 * 109.46997 * 329.99953 * 16 14 12 20 20 C 1.40956 * 119.77974 * 0.03003 * 11 10 9 21 21 C 1.50699 * 120.06137 * 180.02562 * 20 11 10 22 22 C 1.36231 * 119.88315 * 359.97438 * 20 11 10 23 23 C 1.40081 * 119.10447 * 0.27117 * 7 6 5 24 24 N 1.31181 * 120.72483 * 359.45021 * 23 7 6 25 25 H 1.09000 * 109.46950 * 239.99575 * 1 2 3 26 26 H 1.08994 * 109.47154 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46901 * 120.00270 * 1 2 3 28 28 H 1.07995 * 120.40742 * 359.97438 * 5 4 2 29 29 H 1.07998 * 120.81037 * 180.02562 * 6 5 4 30 30 H 1.07997 * 119.93942 * 0.02562 * 9 8 7 31 31 H 1.07993 * 120.05993 * 180.02562 * 10 9 8 32 32 H 0.96996 * 120.00331 * 180.02562 * 15 14 12 33 33 H 1.09001 * 109.47439 * 89.99608 * 21 20 11 34 34 H 1.09000 * 109.47744 * 209.99898 * 21 20 11 35 35 H 1.08996 * 109.46813 * 329.99917 * 21 20 11 36 36 H 1.08002 * 119.93784 * 179.97438 * 22 20 11 37 37 H 1.08006 * 119.63719 * 179.73198 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2436 -1.2757 0.0006 5 6 3.6415 -1.2655 0.0000 6 6 4.3239 -2.4665 0.0000 7 6 3.5814 -3.6543 0.0000 8 6 4.2647 -4.9647 0.0006 9 6 5.6642 -5.0220 0.0006 10 6 6.2988 -6.2270 0.0006 11 6 5.5443 -7.4182 0.0012 12 6 6.1961 -8.6679 0.0077 13 1 5.7031 -9.5319 0.4284 14 6 7.4837 -8.7894 -0.5320 15 7 7.9577 -7.8516 -1.3095 16 14 8.5226 -10.2916 -0.1403 17 1 8.2679 -11.3474 -1.1530 18 1 9.9600 -9.9193 -0.1642 19 1 8.1659 -10.8023 1.2077 20 6 4.1362 -7.3551 0.0012 21 6 3.3236 -8.6242 0.0024 22 6 3.5110 -6.1447 0.0011 23 6 2.1824 -3.5834 -0.0058 24 7 1.5701 -2.4232 -0.0003 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 4.1813 -0.3302 -0.0012 29 1 5.4036 -2.4892 0.0000 30 1 6.2410 -4.1090 0.0006 31 1 7.3778 -6.2701 0.0010 32 1 8.8488 -7.9359 -1.6834 33 1 3.1278 -8.9293 1.0304 34 1 2.3782 -8.4510 -0.5115 35 1 3.8773 -9.4105 -0.5106 36 1 2.4322 -6.0953 0.0007 37 1 1.6014 -4.4939 -0.0102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242401733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:36 Heat of formation + Delta-G solvation = -1.162200 kcal Electronic energy + Delta-G solvation = -20214.689257 eV Core-core repulsion = 17113.873386 eV Total energy + Delta-G solvation = -3100.815870 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.11096 -38.67781 -37.76963 -34.36641 -32.93418 -31.60966 -31.25839 -30.14731 -28.77813 -26.58687 -25.35810 -23.61737 -23.01462 -20.82807 -20.30977 -19.31720 -17.62147 -16.96326 -16.09175 -15.69182 -15.28930 -15.00434 -14.57976 -14.33332 -13.74292 -13.71283 -13.30586 -13.15488 -12.95421 -12.76063 -12.46107 -12.09036 -12.04318 -11.83833 -11.67388 -11.39773 -11.32325 -11.16522 -10.94727 -10.73646 -10.08607 -9.83587 -9.69407 -9.62093 -9.41987 -9.02336 -8.84526 -7.69359 -7.30937 -7.11406 -4.64699 0.68746 1.66237 2.19526 2.70854 2.85371 2.87423 2.90860 3.10537 3.63628 4.10192 4.12477 4.48643 4.75657 5.19020 5.30833 5.34515 5.36357 5.38919 5.54450 5.58554 5.78943 5.85305 6.00919 6.07126 6.17045 6.22126 6.40089 6.48119 6.50498 6.55661 6.69229 6.81119 6.95420 7.01426 7.13518 7.33530 7.51304 7.60201 7.72916 7.81340 7.93303 8.24752 8.26870 8.47983 8.61453 9.74874 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038549 B = 0.003406 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.171812 B = 8218.479983 C = 8857.059326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.417 3.583 3 O -0.472 6.472 4 C -0.031 4.031 5 C -0.091 4.091 6 C -0.133 4.133 7 C 0.017 3.983 8 C -0.215 4.215 9 C -0.070 4.070 10 C -0.170 4.170 11 C 0.126 3.874 12 C -0.428 4.428 13 H 0.089 0.911 14 C 0.071 3.929 15 N -0.767 5.767 16 Si 0.914 3.086 17 H -0.265 1.265 18 H -0.272 1.272 19 H -0.257 1.257 20 C -0.200 4.200 21 C -0.088 4.088 22 C -0.050 4.050 23 C 0.059 3.941 24 N -0.432 5.432 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.289 0.711 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.412 3.277 1.501 6.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.296 3.704 3 O -0.347 6.347 4 C -0.165 4.165 5 C -0.111 4.111 6 C -0.158 4.158 7 C 0.015 3.985 8 C -0.217 4.217 9 C -0.088 4.088 10 C -0.189 4.189 11 C 0.123 3.877 12 C -0.455 4.455 13 H 0.107 0.893 14 C -0.151 4.151 15 N -0.389 5.389 16 Si 0.737 3.263 17 H -0.190 1.190 18 H -0.197 1.197 19 H -0.180 1.180 20 C -0.201 4.201 21 C -0.144 4.144 22 C -0.068 4.068 23 C -0.105 4.105 24 N -0.143 5.143 25 H 0.112 0.888 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.151 0.849 29 H 0.153 0.847 30 H 0.111 0.889 31 H 0.138 0.862 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.790 3.998 1.344 7.163 hybrid contribution 1.569 -0.775 0.002 1.750 sum -4.221 3.223 1.346 5.479 Atomic orbital electron populations 1.22043 0.93375 1.03580 1.05054 1.22229 0.91779 0.86466 0.69912 1.90501 1.72558 1.33710 1.37973 1.21226 0.91610 0.93500 1.10117 1.22024 0.94401 0.99022 0.95665 1.21574 1.00663 0.91247 1.02274 1.20254 0.93971 0.94096 0.90194 1.17905 0.92946 0.89660 1.21232 1.20536 0.92803 0.97049 0.98447 1.20987 0.99880 0.91232 1.06825 1.17664 0.90415 0.93346 0.86285 1.19873 0.98444 0.96188 1.30988 0.89318 1.26145 0.98030 0.98273 0.92667 1.69754 1.17390 1.32381 1.19421 0.86195 0.78775 0.80790 0.80551 1.19029 1.19702 1.18026 1.19465 0.93926 0.93677 1.13069 1.20436 0.97689 0.96320 0.99986 1.20303 0.97159 0.91801 0.97562 1.22810 0.91651 0.94990 1.01020 1.67363 1.40810 0.97883 1.08231 0.88843 0.90649 0.88841 0.84863 0.84707 0.88851 0.86241 0.90017 0.93707 0.93970 0.91954 0.88530 0.82507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 9.79 36.01 0.35 -1.70 16 2 C 0.42 6.25 7.23 -30.62 -0.22 6.03 16 3 O -0.47 -8.05 17.04 5.59 0.10 -7.96 16 4 C -0.03 -0.52 6.73 -83.07 -0.56 -1.07 16 5 C -0.09 -1.49 9.61 -39.04 -0.38 -1.87 16 6 C -0.13 -2.27 9.52 -38.93 -0.37 -2.64 16 7 C 0.02 0.31 5.91 -104.61 -0.62 -0.30 16 8 C -0.22 -4.41 5.90 -104.64 -0.62 -5.02 16 9 C -0.07 -1.49 9.37 -39.63 -0.37 -1.86 16 10 C -0.17 -3.97 8.62 -39.27 -0.34 -4.31 16 11 C 0.13 2.98 5.56 -106.80 -0.59 2.38 16 12 C -0.43 -9.87 8.09 -37.84 -0.31 -10.18 16 13 H 0.09 1.94 6.89 -52.48 -0.36 1.57 16 14 C 0.07 1.56 5.16 -17.31 -0.09 1.47 16 15 N -0.77 -17.57 10.97 55.56 0.61 -16.96 16 16 Si 0.91 16.38 29.59 -169.99 -5.03 11.35 16 17 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 18 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 19 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 20 C -0.20 -4.31 5.90 -104.32 -0.62 -4.92 16 21 C -0.09 -1.60 9.38 36.01 0.34 -1.26 16 22 C -0.05 -1.01 9.01 -39.64 -0.36 -1.37 16 23 C 0.06 1.01 10.60 -17.14 -0.18 0.82 16 24 N -0.43 -7.20 9.76 -9.55 -0.09 -7.29 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 27 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.13 1.99 7.62 -52.49 -0.40 1.59 16 29 H 0.14 2.13 6.28 -52.49 -0.33 1.80 16 30 H 0.09 1.79 6.23 -52.49 -0.33 1.46 16 31 H 0.12 2.86 6.23 -52.49 -0.33 2.54 16 32 H 0.29 5.97 8.29 -40.82 -0.34 5.63 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.06 1.16 6.79 -51.93 -0.35 0.81 16 36 H 0.10 1.68 6.19 -52.49 -0.32 1.36 16 37 H 0.16 2.40 6.19 -52.48 -0.32 2.07 16 LS Contribution 316.39 15.07 4.77 4.77 Total: -1.00 -25.42 316.39 -8.57 -33.98 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -3.99 Total: 7.92 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -4.92 Total: -25.80 kcal Atomic # 7 Polarization: -24.77 SS G_CDS: 0.52 Total: -24.26 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.10 Total: -7.96 kcal Atomic # 14 Polarization: 16.38 SS G_CDS: -5.03 Total: 11.35 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -25.42 -8.57 -33.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242401733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.821 kcal (2) G-P(sol) polarization free energy of solvation -25.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds