Wall clock time and date at job start Tue Mar 31 2020 05:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21246 * 119.99661 * 2 1 4 4 C 1.47300 * 120.00047 * 179.97438 * 2 1 3 5 5 C 1.39795 * 119.58519 * 179.97438 * 4 2 1 6 6 C 1.38130 * 119.19032 * 180.02562 * 5 4 2 7 7 C 1.40081 * 118.38566 * 0.02562 * 6 5 4 8 8 C 1.47785 * 120.45054 * 180.02562 * 7 6 5 9 9 C 1.40066 * 119.88495 * 359.97438 * 8 7 6 10 10 C 1.36187 * 120.11552 * 180.02562 * 9 8 7 11 11 C 1.41002 * 119.88156 * 359.97087 * 10 9 8 12 12 C 1.40938 * 120.10954 * 180.30249 * 11 10 9 13 13 H 1.08005 * 120.00244 * 153.31178 * 12 11 10 14 14 C 1.40145 * 119.99858 * 333.30566 * 12 11 10 15 15 N 1.30713 * 120.00283 * 344.06059 * 14 12 11 16 16 Si 1.86804 * 119.99747 * 164.06055 * 14 12 11 17 17 H 1.48497 * 109.46998 * 90.00074 * 16 14 12 18 18 H 1.48496 * 109.47134 * 209.99944 * 16 14 12 19 19 H 1.48499 * 109.46997 * 329.99953 * 16 14 12 20 20 C 1.40956 * 119.77974 * 0.03003 * 11 10 9 21 21 C 1.50699 * 120.06137 * 180.02562 * 20 11 10 22 22 C 1.36231 * 119.88315 * 359.97438 * 20 11 10 23 23 C 1.40081 * 119.10447 * 0.27117 * 7 6 5 24 24 N 1.31181 * 120.72483 * 359.45021 * 23 7 6 25 25 H 1.09000 * 109.46950 * 239.99575 * 1 2 3 26 26 H 1.08994 * 109.47154 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46901 * 120.00270 * 1 2 3 28 28 H 1.07995 * 120.40742 * 359.97438 * 5 4 2 29 29 H 1.07998 * 120.81037 * 180.02562 * 6 5 4 30 30 H 1.07997 * 119.93942 * 0.02562 * 9 8 7 31 31 H 1.07993 * 120.05993 * 180.02562 * 10 9 8 32 32 H 0.96996 * 120.00331 * 180.02562 * 15 14 12 33 33 H 1.09001 * 109.47439 * 89.99608 * 21 20 11 34 34 H 1.09000 * 109.47744 * 209.99898 * 21 20 11 35 35 H 1.08996 * 109.46813 * 329.99917 * 21 20 11 36 36 H 1.08002 * 119.93784 * 179.97438 * 22 20 11 37 37 H 1.08006 * 119.63719 * 179.73198 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2436 -1.2757 0.0006 5 6 3.6415 -1.2655 0.0000 6 6 4.3239 -2.4665 0.0000 7 6 3.5814 -3.6543 0.0000 8 6 4.2647 -4.9647 0.0006 9 6 5.6642 -5.0220 0.0006 10 6 6.2988 -6.2270 0.0006 11 6 5.5443 -7.4182 0.0012 12 6 6.1961 -8.6679 0.0077 13 1 5.7031 -9.5319 0.4284 14 6 7.4837 -8.7894 -0.5320 15 7 7.9577 -7.8516 -1.3095 16 14 8.5226 -10.2916 -0.1403 17 1 8.2679 -11.3474 -1.1530 18 1 9.9600 -9.9193 -0.1642 19 1 8.1659 -10.8023 1.2077 20 6 4.1362 -7.3551 0.0012 21 6 3.3236 -8.6242 0.0024 22 6 3.5110 -6.1447 0.0011 23 6 2.1824 -3.5834 -0.0058 24 7 1.5701 -2.4232 -0.0003 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 4.1813 -0.3302 -0.0012 29 1 5.4036 -2.4892 0.0000 30 1 6.2410 -4.1090 0.0006 31 1 7.3778 -6.2701 0.0010 32 1 8.8488 -7.9359 -1.6834 33 1 3.1278 -8.9293 1.0304 34 1 2.3782 -8.4510 -0.5115 35 1 3.8773 -9.4105 -0.5106 36 1 2.4322 -6.0953 0.0007 37 1 1.6014 -4.4939 -0.0102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242401733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:35 Heat of formation + Delta-G solvation = -11.915015 kcal Electronic energy + Delta-G solvation = -20215.155534 eV Core-core repulsion = 17113.873386 eV Total energy + Delta-G solvation = -3101.282147 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.45928 -40.07360 -39.26019 -35.94105 -34.41877 -33.00015 -32.76197 -31.42737 -30.14163 -28.11658 -26.85688 -25.02847 -24.46039 -22.37973 -21.68983 -20.78411 -19.24274 -18.27325 -17.50231 -17.16889 -16.77253 -16.20635 -16.00212 -15.64220 -15.24015 -15.12632 -14.66187 -14.63071 -14.38452 -14.22251 -13.88652 -13.38605 -13.22786 -13.02873 -13.01077 -12.86255 -12.82943 -12.65680 -12.48352 -12.17998 -11.57080 -11.29047 -11.23248 -11.10840 -10.84857 -10.38085 -10.31336 -9.32217 -8.92231 -8.70870 -6.34261 -0.67304 0.29961 0.77934 1.17398 1.32583 1.39413 1.51862 1.64884 2.15517 2.61262 2.88329 3.00294 3.49071 3.70381 3.93403 3.96690 3.99089 4.16998 4.31452 4.38940 4.52166 4.64499 4.71097 4.72458 4.81265 4.91377 5.03289 5.06106 5.08324 5.13662 5.22872 5.32500 5.36457 5.46071 5.65203 5.71586 5.96189 6.09334 6.15549 6.29296 6.32833 6.59970 6.82606 6.89354 6.97060 8.18774 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038549 B = 0.003406 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.171812 B = 8218.479983 C = 8857.059326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.418 3.582 3 O -0.493 6.493 4 C -0.027 4.027 5 C -0.100 4.100 6 C -0.127 4.127 7 C -0.005 4.005 8 C -0.211 4.211 9 C -0.080 4.080 10 C -0.195 4.195 11 C 0.095 3.905 12 C -0.464 4.464 13 H 0.090 0.910 14 C 0.034 3.966 15 N -0.807 5.807 16 Si 0.981 3.019 17 H -0.260 1.260 18 H -0.269 1.269 19 H -0.256 1.256 20 C -0.215 4.215 21 C -0.083 4.083 22 C -0.058 4.058 23 C 0.066 3.934 24 N -0.430 5.430 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.147 0.853 29 H 0.143 0.857 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.293 0.707 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.127 0.873 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.572 4.249 1.771 8.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.370 6.370 4 C -0.161 4.161 5 C -0.120 4.120 6 C -0.152 4.152 7 C -0.007 4.007 8 C -0.213 4.213 9 C -0.099 4.099 10 C -0.215 4.215 11 C 0.092 3.908 12 C -0.491 4.491 13 H 0.108 0.892 14 C -0.184 4.184 15 N -0.431 5.431 16 Si 0.801 3.199 17 H -0.185 1.185 18 H -0.193 1.193 19 H -0.179 1.179 20 C -0.216 4.216 21 C -0.139 4.139 22 C -0.076 4.076 23 C -0.097 4.097 24 N -0.141 5.141 25 H 0.125 0.875 26 H 0.110 0.890 27 H 0.124 0.876 28 H 0.165 0.835 29 H 0.161 0.839 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.145 0.855 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.971 4.968 1.616 9.530 hybrid contribution 2.014 -0.690 -0.069 2.130 sum -5.957 4.278 1.547 7.495 Atomic orbital electron populations 1.22060 0.89983 1.05131 1.06129 1.22697 0.93470 0.85256 0.68804 1.90507 1.73401 1.34191 1.38890 1.21758 0.91996 0.94424 1.07916 1.22231 0.94743 0.99297 0.95685 1.21766 1.01306 0.91242 1.00847 1.20252 0.94792 0.93442 0.92243 1.18150 0.92631 0.90973 1.19538 1.20742 0.93767 0.96964 0.98383 1.20965 0.99273 0.92356 1.08866 1.18018 0.91776 0.93677 0.87303 1.20040 0.99782 0.96299 1.33010 0.89157 1.26901 0.98678 1.00829 0.91953 1.69810 1.18005 1.34373 1.20885 0.85198 0.77089 0.77375 0.80194 1.18486 1.19317 1.17909 1.19888 0.93593 0.95579 1.12562 1.20420 0.97994 0.94592 1.00913 1.20625 0.98734 0.91175 0.97107 1.23113 0.91195 0.95912 0.99456 1.67472 1.40421 0.97710 1.08490 0.87545 0.89036 0.87603 0.83524 0.83897 0.87428 0.88037 0.89634 0.92514 0.91652 0.92974 0.85494 0.80585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 9.79 71.24 0.70 -2.55 16 2 C 0.42 11.23 7.23 28.07 0.20 11.43 16 3 O -0.49 -15.59 17.04 -2.92 -0.05 -15.64 16 4 C -0.03 -0.81 6.73 41.72 0.28 -0.53 16 5 C -0.10 -3.04 9.61 22.62 0.22 -2.82 16 6 C -0.13 -4.12 9.52 22.69 0.22 -3.90 16 7 C -0.01 -0.18 5.91 -19.86 -0.12 -0.30 16 8 C -0.21 -8.49 5.90 -19.88 -0.12 -8.61 16 9 C -0.08 -3.49 9.37 22.24 0.21 -3.29 16 10 C -0.20 -9.56 8.62 22.47 0.19 -9.37 16 11 C 0.10 4.66 5.56 -21.27 -0.12 4.55 16 12 C -0.46 -22.34 8.09 23.39 0.19 -22.15 16 13 H 0.09 4.11 6.89 -2.91 -0.02 4.09 16 14 C 0.03 1.57 5.16 85.32 0.44 2.01 16 15 N -0.81 -38.87 10.97 21.86 0.24 -38.63 16 16 Si 0.98 34.55 29.59 68.60 2.03 36.58 16 17 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 18 H -0.27 -9.15 7.11 99.48 0.71 -8.45 16 19 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 20 C -0.22 -9.29 5.90 -19.67 -0.12 -9.40 16 21 C -0.08 -2.96 9.38 71.24 0.67 -2.29 16 22 C -0.06 -2.30 9.01 22.23 0.20 -2.10 16 23 C 0.07 2.06 10.60 85.24 0.90 2.96 16 24 N -0.43 -12.93 9.76 -184.13 -1.80 -14.72 16 25 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.09 1.43 8.12 -2.39 -0.02 1.41 16 27 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.15 4.07 7.62 -2.91 -0.02 4.04 16 29 H 0.14 4.34 6.28 -2.91 -0.02 4.32 16 30 H 0.11 4.19 6.23 -2.91 -0.02 4.17 16 31 H 0.10 5.22 6.23 -2.91 -0.02 5.20 16 32 H 0.29 12.73 8.29 -92.71 -0.77 11.96 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 35 H 0.05 1.95 6.79 -2.39 -0.02 1.93 16 36 H 0.13 4.08 6.19 -2.91 -0.02 4.06 16 37 H 0.18 4.74 6.19 -2.91 -0.02 4.73 16 Total: -1.00 -55.75 316.39 5.48 -50.27 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 1.11 Total: 28.49 kcal Atomic # 6 Polarization: -50.30 SS G_CDS: 3.95 Total: -46.35 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -1.56 Total: -53.35 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.05 Total: -15.64 kcal Atomic # 14 Polarization: 34.55 SS G_CDS: 2.03 Total: 36.58 kcal Total: -55.75 5.48 -50.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242401733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.357 kcal (2) G-P(sol) polarization free energy of solvation -55.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds