Wall clock time and date at job start Tue Mar 31 2020 05:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21212 * 120.00018 * 2 1 4 4 C 1.47558 * 120.00128 * 179.97438 * 2 1 3 5 5 C 1.39309 * 119.67682 * 179.97438 * 4 2 1 6 6 C 1.39926 * 118.86875 * 179.97438 * 5 4 2 7 7 C 1.48014 * 120.88895 * 179.97438 * 6 5 4 8 8 C 1.39939 * 119.87828 * 310.00560 * 7 6 5 9 9 C 1.36251 * 120.12217 * 180.27524 * 8 7 6 10 10 C 1.40944 * 119.87715 * 359.47789 * 9 8 7 11 11 C 1.41035 * 120.12441 * 180.25774 * 10 9 8 12 12 H 1.07997 * 120.00066 * 204.82143 * 11 10 9 13 13 C 1.40075 * 119.99880 * 24.81900 * 11 10 9 14 14 N 1.30760 * 119.99847 * 17.78442 * 13 11 10 15 15 Si 1.86794 * 119.99963 * 197.78348 * 13 11 10 16 16 H 1.48494 * 109.47336 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47337 * 120.00395 * 15 13 11 18 18 H 1.48499 * 109.46932 * 240.00053 * 15 13 11 19 19 C 1.40908 * 119.75701 * 0.53609 * 10 9 8 20 20 C 1.36285 * 119.87756 * 359.71780 * 19 10 9 21 21 C 1.50702 * 119.93952 * 179.97438 * 20 19 10 22 22 C 1.39962 * 118.22328 * 0.25425 * 6 5 4 23 23 C 1.38369 * 119.22972 * 359.49917 * 22 6 5 24 24 N 1.31528 * 121.07248 * 0.51340 * 23 22 6 25 25 H 1.09005 * 109.46995 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47149 * 299.99594 * 1 2 3 27 27 H 1.08999 * 109.47510 * 60.00419 * 1 2 3 28 28 H 1.07997 * 120.56283 * 359.95873 * 5 4 2 29 29 H 1.08001 * 119.93995 * 359.97438 * 8 7 6 30 30 H 1.08000 * 120.06527 * 179.71665 * 9 8 7 31 31 H 0.96999 * 119.99648 * 179.97438 * 14 13 11 32 32 H 1.08005 * 120.06440 * 179.73330 * 19 10 9 33 33 H 1.08997 * 109.46824 * 270.01898 * 21 20 19 34 34 H 1.08999 * 109.47114 * 30.01969 * 21 20 19 35 35 H 1.09004 * 109.47242 * 150.02129 * 21 20 19 36 36 H 1.08004 * 120.38468 * 179.72141 * 22 6 5 37 37 H 1.07991 * 119.46298 * 180.23098 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1130 1.0497 0.0000 4 6 2.2448 -1.2779 0.0006 5 6 3.6378 -1.2700 0.0000 6 6 4.3203 -2.4915 0.0011 7 6 5.7998 -2.5353 0.0000 8 6 6.5190 -1.7775 -0.9310 9 6 7.8809 -1.8184 -0.9401 10 6 8.5655 -2.6174 -0.0023 11 6 9.9753 -2.6594 -0.0035 12 1 10.4902 -3.5193 0.3987 13 6 10.7075 -1.5859 -0.5266 14 7 10.1348 -0.4218 -0.6899 15 14 12.5020 -1.8174 -0.9907 16 1 12.9092 -3.2176 -0.7103 17 1 12.6805 -1.5294 -2.4365 18 1 13.3431 -0.8888 -0.1936 19 6 7.8363 -3.3787 0.9326 20 6 6.4742 -3.3344 0.9295 21 6 5.6928 -4.1484 1.9284 22 6 3.5666 -3.6709 -0.0027 23 6 2.1853 -3.5899 0.0031 24 7 1.5735 -2.4256 0.0021 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 4.1817 -0.3370 -0.0015 29 1 5.9935 -1.1628 -1.6468 30 1 8.4349 -1.2367 -1.6619 31 1 10.6419 0.3216 -1.0517 32 1 8.3558 -3.9960 1.6506 33 1 5.4807 -5.1319 1.5091 34 1 6.2771 -4.2612 2.8417 35 1 4.7555 -3.6410 2.1570 36 1 4.0575 -4.6329 -0.0066 37 1 1.6001 -4.4975 0.0039 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242610771.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:08 Heat of formation + Delta-G solvation = 2.354321 kcal Electronic energy + Delta-G solvation = -20500.782765 eV Core-core repulsion = 17400.119382 eV Total energy + Delta-G solvation = -3100.663382 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.25835 -38.71570 -37.73077 -34.49449 -32.60466 -31.70316 -31.21363 -29.75324 -29.28098 -26.03700 -25.75340 -23.81230 -22.92725 -20.90412 -20.37471 -19.30461 -17.15778 -16.82631 -16.20036 -15.52848 -15.43533 -15.08891 -14.58654 -14.41090 -14.00471 -13.98031 -13.61798 -13.16518 -12.85656 -12.68352 -12.24279 -12.13596 -12.06983 -11.82349 -11.71789 -11.56627 -11.20083 -11.09901 -10.75801 -10.48363 -10.08200 -9.99587 -9.69649 -9.49173 -9.15714 -9.01915 -8.91859 -7.62212 -7.35218 -6.99238 -4.54669 0.73642 1.45687 2.35150 2.67202 2.92934 2.96386 3.01268 3.06671 3.76593 3.92889 4.10417 4.41699 4.65246 5.10017 5.21599 5.36080 5.43245 5.43290 5.46212 5.58884 5.70314 5.83542 5.90102 5.99351 6.00898 6.18838 6.22172 6.35713 6.45218 6.62460 6.78765 6.86438 6.91054 7.09362 7.16986 7.43476 7.44759 7.70502 7.86681 7.92489 8.07174 8.09713 8.42407 8.65691 8.76399 9.93336 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025734 B = 0.003986 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.790601 B = 7022.101342 C = 7834.176405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.413 3.587 3 O -0.455 6.455 4 C 0.033 3.967 5 C -0.119 4.119 6 C 0.053 3.947 7 C -0.219 4.219 8 C -0.068 4.068 9 C -0.173 4.173 10 C 0.123 3.877 11 C -0.447 4.447 12 H 0.083 0.917 13 C 0.074 3.926 14 N -0.776 5.776 15 Si 0.911 3.089 16 H -0.258 1.258 17 H -0.269 1.269 18 H -0.272 1.272 19 C -0.228 4.228 20 C -0.029 4.029 21 C -0.110 4.110 22 C -0.155 4.155 23 C 0.090 3.910 24 N -0.470 5.470 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.140 0.860 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.285 0.715 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.136 0.864 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.598 -3.753 0.455 11.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.289 3.711 3 O -0.328 6.328 4 C -0.101 4.101 5 C -0.140 4.140 6 C 0.046 3.954 7 C -0.221 4.221 8 C -0.087 4.087 9 C -0.192 4.192 10 C 0.120 3.880 11 C -0.475 4.475 12 H 0.101 0.899 13 C -0.147 4.147 14 N -0.399 5.399 15 Si 0.735 3.265 16 H -0.182 1.182 17 H -0.194 1.194 18 H -0.197 1.197 19 C -0.247 4.247 20 C -0.029 4.029 21 C -0.166 4.166 22 C -0.175 4.175 23 C -0.069 4.069 24 N -0.184 5.184 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.158 0.842 29 H 0.108 0.892 30 H 0.137 0.863 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.154 0.846 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.141 -2.856 0.390 11.508 hybrid contribution 1.802 -0.098 -0.219 1.818 sum -9.339 -2.954 0.171 9.796 Atomic orbital electron populations 1.22090 0.93096 1.05779 1.03940 1.22423 0.91913 0.86451 0.70289 1.90543 1.72439 1.33613 1.36214 1.21465 0.91644 0.93770 1.03250 1.22532 0.93755 0.99691 0.97995 1.19347 0.94427 0.91378 0.90265 1.17734 0.88121 1.10227 1.05998 1.20410 0.94521 0.96780 0.96951 1.20981 0.92385 1.04511 1.01344 1.17710 0.93250 0.88826 0.88224 1.19755 0.91551 1.02701 1.33477 0.89902 1.26052 1.01525 0.94252 0.92828 1.69802 1.38883 1.00900 1.30336 0.86199 0.81150 0.80001 0.79144 1.18152 1.19438 1.19730 1.20523 0.92394 1.08718 1.03101 1.19037 0.93712 0.95302 0.94894 1.20828 0.99294 0.98724 0.97782 1.22624 0.94703 0.99596 1.00575 1.22561 0.92134 0.95174 0.97049 1.67439 1.40752 0.97805 1.12359 0.88499 0.89268 0.89269 0.84219 0.89231 0.86279 0.90382 0.88589 0.92318 0.92611 0.92803 0.84630 0.82763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 10.28 36.00 0.37 -1.67 16 2 C 0.41 6.20 7.24 -30.51 -0.22 5.98 16 3 O -0.46 -8.13 17.06 5.62 0.10 -8.03 16 4 C 0.03 0.54 6.73 -83.18 -0.56 -0.02 16 5 C -0.12 -2.17 9.17 -38.55 -0.35 -2.52 16 6 C 0.05 0.98 4.71 -104.61 -0.49 0.49 16 7 C -0.22 -4.66 5.54 -104.63 -0.58 -5.24 16 8 C -0.07 -1.55 9.47 -39.66 -0.38 -1.92 16 9 C -0.17 -4.31 8.63 -39.27 -0.34 -4.65 16 10 C 0.12 3.11 5.57 -106.80 -0.60 2.51 16 11 C -0.45 -11.17 9.03 -37.83 -0.34 -11.51 16 12 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 13 C 0.07 1.75 5.13 -17.32 -0.09 1.66 16 14 N -0.78 -19.08 10.96 55.55 0.61 -18.47 16 15 Si 0.91 17.56 29.60 -169.99 -5.03 12.53 16 16 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 17 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 18 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 19 C -0.23 -5.27 9.36 -39.27 -0.37 -5.64 16 20 C -0.03 -0.61 5.84 -104.70 -0.61 -1.22 16 21 C -0.11 -1.84 8.47 36.01 0.30 -1.53 16 22 C -0.16 -2.37 8.02 -38.89 -0.31 -2.68 16 23 C 0.09 1.22 11.17 -17.63 -0.20 1.02 16 24 N -0.47 -6.99 9.14 -9.98 -0.09 -7.08 16 25 H 0.10 0.99 7.07 -51.93 -0.37 0.62 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.14 2.68 7.64 -52.49 -0.40 2.28 16 29 H 0.09 1.91 8.05 -52.49 -0.42 1.48 16 30 H 0.12 3.06 6.17 -52.49 -0.32 2.74 16 31 H 0.29 6.33 8.29 -40.82 -0.34 5.99 16 32 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 33 H 0.06 0.86 7.53 -51.93 -0.39 0.47 16 34 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.05 0.88 6.45 -51.93 -0.33 0.54 16 36 H 0.14 1.88 6.94 -52.48 -0.36 1.51 16 37 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 318.96 15.07 4.81 4.81 Total: -1.00 -27.35 318.96 -8.63 -35.99 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -4.26 Total: 7.21 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -4.76 Total: -26.95 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.52 Total: -25.55 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.10 Total: -8.03 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.35 -8.63 -35.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242610771.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.343 kcal (2) G-P(sol) polarization free energy of solvation -27.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds