Wall clock time and date at job start Tue Mar 31 2020 05:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21212 * 120.00018 * 2 1 4 4 C 1.47558 * 120.00128 * 179.97438 * 2 1 3 5 5 C 1.39309 * 119.67682 * 179.97438 * 4 2 1 6 6 C 1.39926 * 118.86875 * 179.97438 * 5 4 2 7 7 C 1.48014 * 120.88895 * 179.97438 * 6 5 4 8 8 C 1.39939 * 119.87828 * 310.00560 * 7 6 5 9 9 C 1.36251 * 120.12217 * 180.27524 * 8 7 6 10 10 C 1.40944 * 119.87715 * 359.47789 * 9 8 7 11 11 C 1.41035 * 120.12441 * 180.25774 * 10 9 8 12 12 H 1.07997 * 120.00066 * 204.82143 * 11 10 9 13 13 C 1.40075 * 119.99880 * 24.81900 * 11 10 9 14 14 N 1.30760 * 119.99847 * 17.78442 * 13 11 10 15 15 Si 1.86794 * 119.99963 * 197.78348 * 13 11 10 16 16 H 1.48494 * 109.47336 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47337 * 120.00395 * 15 13 11 18 18 H 1.48499 * 109.46932 * 240.00053 * 15 13 11 19 19 C 1.40908 * 119.75701 * 0.53609 * 10 9 8 20 20 C 1.36285 * 119.87756 * 359.71780 * 19 10 9 21 21 C 1.50702 * 119.93952 * 179.97438 * 20 19 10 22 22 C 1.39962 * 118.22328 * 0.25425 * 6 5 4 23 23 C 1.38369 * 119.22972 * 359.49917 * 22 6 5 24 24 N 1.31528 * 121.07248 * 0.51340 * 23 22 6 25 25 H 1.09005 * 109.46995 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47149 * 299.99594 * 1 2 3 27 27 H 1.08999 * 109.47510 * 60.00419 * 1 2 3 28 28 H 1.07997 * 120.56283 * 359.95873 * 5 4 2 29 29 H 1.08001 * 119.93995 * 359.97438 * 8 7 6 30 30 H 1.08000 * 120.06527 * 179.71665 * 9 8 7 31 31 H 0.96999 * 119.99648 * 179.97438 * 14 13 11 32 32 H 1.08005 * 120.06440 * 179.73330 * 19 10 9 33 33 H 1.08997 * 109.46824 * 270.01898 * 21 20 19 34 34 H 1.08999 * 109.47114 * 30.01969 * 21 20 19 35 35 H 1.09004 * 109.47242 * 150.02129 * 21 20 19 36 36 H 1.08004 * 120.38468 * 179.72141 * 22 6 5 37 37 H 1.07991 * 119.46298 * 180.23098 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1130 1.0497 0.0000 4 6 2.2448 -1.2779 0.0006 5 6 3.6378 -1.2700 0.0000 6 6 4.3203 -2.4915 0.0011 7 6 5.7998 -2.5353 0.0000 8 6 6.5190 -1.7775 -0.9310 9 6 7.8809 -1.8184 -0.9401 10 6 8.5655 -2.6174 -0.0023 11 6 9.9753 -2.6594 -0.0035 12 1 10.4902 -3.5193 0.3987 13 6 10.7075 -1.5859 -0.5266 14 7 10.1348 -0.4218 -0.6899 15 14 12.5020 -1.8174 -0.9907 16 1 12.9092 -3.2176 -0.7103 17 1 12.6805 -1.5294 -2.4365 18 1 13.3431 -0.8888 -0.1936 19 6 7.8363 -3.3787 0.9326 20 6 6.4742 -3.3344 0.9295 21 6 5.6928 -4.1484 1.9284 22 6 3.5666 -3.6709 -0.0027 23 6 2.1853 -3.5899 0.0031 24 7 1.5735 -2.4256 0.0021 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 4.1817 -0.3370 -0.0015 29 1 5.9935 -1.1628 -1.6468 30 1 8.4349 -1.2367 -1.6619 31 1 10.6419 0.3216 -1.0517 32 1 8.3558 -3.9960 1.6506 33 1 5.4807 -5.1319 1.5091 34 1 6.2771 -4.2612 2.8417 35 1 4.7555 -3.6410 2.1570 36 1 4.0575 -4.6329 -0.0066 37 1 1.6001 -4.4975 0.0039 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242610771.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:07 Heat of formation + Delta-G solvation = -10.877447 kcal Electronic energy + Delta-G solvation = -20501.356537 eV Core-core repulsion = 17400.119382 eV Total energy + Delta-G solvation = -3101.237155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.54872 -40.11156 -39.29542 -36.18101 -34.12045 -33.22948 -32.55561 -31.23806 -30.52425 -27.62595 -27.40654 -25.07380 -24.34739 -22.46181 -22.07746 -20.69641 -18.91962 -18.19177 -17.48426 -17.11568 -16.80362 -16.28621 -16.08395 -15.75638 -15.54987 -15.45044 -14.99102 -14.47439 -14.33398 -14.22383 -13.79196 -13.43005 -13.34711 -13.06995 -13.02914 -12.95909 -12.75662 -12.73611 -12.28160 -12.14493 -11.67882 -11.43153 -11.29151 -11.16695 -10.58945 -10.41370 -10.16293 -9.41806 -9.10348 -8.75101 -6.41640 -0.52727 0.08739 0.90273 1.10688 1.26876 1.36151 1.49795 1.52259 2.15208 2.59505 2.79057 2.89518 3.48798 3.62863 3.89223 4.02695 4.08488 4.17694 4.28970 4.31970 4.48756 4.61807 4.65449 4.66477 4.79518 4.89667 4.90542 5.03217 5.05578 5.10051 5.17414 5.19176 5.39018 5.41568 5.64631 5.66279 5.93968 6.04844 6.12438 6.27378 6.30087 6.59543 6.82309 6.86374 6.94045 8.20794 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025734 B = 0.003986 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.790601 B = 7022.101342 C = 7834.176405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.410 3.590 3 O -0.494 6.494 4 C 0.028 3.972 5 C -0.139 4.139 6 C 0.030 3.970 7 C -0.212 4.212 8 C -0.079 4.079 9 C -0.198 4.198 10 C 0.093 3.907 11 C -0.486 4.486 12 H 0.083 0.917 13 C 0.034 3.966 14 N -0.815 5.815 15 Si 0.986 3.014 16 H -0.253 1.253 17 H -0.264 1.264 18 H -0.265 1.265 19 C -0.244 4.244 20 C -0.033 4.033 21 C -0.103 4.103 22 C -0.142 4.142 23 C 0.104 3.896 24 N -0.457 5.457 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.291 0.709 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.157 0.843 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.242 -5.843 0.974 14.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.290 3.710 3 O -0.370 6.370 4 C -0.106 4.106 5 C -0.160 4.160 6 C 0.022 3.978 7 C -0.213 4.213 8 C -0.098 4.098 9 C -0.217 4.217 10 C 0.090 3.910 11 C -0.514 4.514 12 H 0.101 0.899 13 C -0.183 4.183 14 N -0.440 5.440 15 Si 0.806 3.194 16 H -0.177 1.177 17 H -0.189 1.189 18 H -0.190 1.190 19 C -0.263 4.263 20 C -0.033 4.033 21 C -0.159 4.159 22 C -0.161 4.161 23 C -0.056 4.056 24 N -0.170 5.170 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.132 0.868 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.175 0.825 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -13.809 -4.958 0.917 14.701 hybrid contribution 2.323 0.497 -0.359 2.402 sum -11.486 -4.461 0.558 12.335 Atomic orbital electron populations 1.22106 0.89051 1.06965 1.05625 1.23076 0.93920 0.85298 0.68748 1.90539 1.73579 1.34668 1.38183 1.21705 0.90849 0.95188 1.02897 1.22420 0.94989 0.98826 0.99733 1.19242 0.92861 0.92891 0.92809 1.18066 0.90153 1.08518 1.04609 1.20586 0.94070 0.97332 0.97819 1.20907 0.93224 1.05692 1.01920 1.18044 0.94051 0.89803 0.89078 1.19982 0.91976 1.03605 1.35841 0.89860 1.26911 1.05902 0.93427 0.92028 1.69864 1.40839 1.01789 1.31521 0.85100 0.75435 0.80026 0.78862 1.17668 1.18878 1.18974 1.20745 0.93593 1.08954 1.03040 1.19510 0.93357 0.95189 0.95270 1.20844 0.98898 0.99284 0.96903 1.22864 0.95489 0.99005 0.98757 1.23353 0.91721 0.96228 0.94259 1.67586 1.40289 0.97736 1.11386 0.87525 0.87401 0.87450 0.86772 0.88863 0.88238 0.89796 0.87794 0.89357 0.91712 0.92018 0.82537 0.77750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 10.28 71.23 0.73 -2.54 16 2 C 0.41 11.80 7.24 28.15 0.20 12.01 16 3 O -0.49 -17.80 17.06 -2.82 -0.05 -17.85 16 4 C 0.03 0.86 6.73 41.69 0.28 1.14 16 5 C -0.14 -5.06 9.17 22.94 0.21 -4.85 16 6 C 0.03 1.05 4.71 -19.86 -0.09 0.96 16 7 C -0.21 -9.11 5.54 -19.87 -0.11 -9.22 16 8 C -0.08 -3.82 9.47 22.22 0.21 -3.61 16 9 C -0.20 -10.55 8.63 22.47 0.19 -10.36 16 10 C 0.09 4.96 5.57 -21.28 -0.12 4.84 16 11 C -0.49 -25.59 9.03 23.40 0.21 -25.37 16 12 H 0.08 4.18 7.91 -2.91 -0.02 4.15 16 13 C 0.03 1.68 5.13 85.30 0.44 2.12 16 14 N -0.82 -42.48 10.96 21.85 0.24 -42.24 16 15 Si 0.99 37.15 29.60 68.60 2.03 39.18 16 16 H -0.25 -9.23 7.11 99.48 0.71 -8.53 16 17 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 18 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 19 C -0.24 -11.58 9.36 22.47 0.21 -11.37 16 20 C -0.03 -1.37 5.84 -19.92 -0.12 -1.49 16 21 C -0.10 -3.16 8.47 71.24 0.60 -2.55 16 22 C -0.14 -3.78 8.02 22.72 0.18 -3.60 16 23 C 0.10 2.27 11.17 84.77 0.95 3.22 16 24 N -0.46 -11.79 9.14 -185.48 -1.69 -13.48 16 25 H 0.11 1.74 7.07 -2.38 -0.02 1.72 16 26 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.11 4.67 7.64 -2.91 -0.02 4.65 16 29 H 0.09 4.25 8.05 -2.91 -0.02 4.23 16 30 H 0.10 5.57 6.17 -2.91 -0.02 5.55 16 31 H 0.29 13.65 8.29 -92.71 -0.77 12.88 16 32 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 33 H 0.09 2.21 7.53 -2.39 -0.02 2.20 16 34 H 0.06 1.88 8.08 -2.39 -0.02 1.86 16 35 H 0.06 1.80 6.45 -2.38 -0.02 1.79 16 36 H 0.16 3.56 6.94 -2.91 -0.02 3.54 16 37 H 0.21 2.52 8.06 -2.92 -0.02 2.50 16 Total: -1.00 -64.17 318.96 5.60 -58.57 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 1.09 Total: 26.52 kcal Atomic # 6 Polarization: -54.67 SS G_CDS: 3.98 Total: -50.69 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -1.46 Total: -55.73 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.05 Total: -17.85 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Total: -64.17 5.60 -58.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242610771.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.691 kcal (2) G-P(sol) polarization free energy of solvation -64.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds