Wall clock time and date at job start Tue Mar 31 2020 05:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21215 * 119.99958 * 2 1 4 4 C 1.47551 * 120.00241 * 180.02562 * 2 1 3 5 5 C 1.39308 * 119.67852 * 179.97438 * 4 2 1 6 6 C 1.39925 * 118.86626 * 179.97438 * 5 4 2 7 7 C 1.48024 * 120.88439 * 179.97438 * 6 5 4 8 8 C 1.39931 * 119.88173 * 0.02562 * 7 6 5 9 9 C 1.36255 * 120.12796 * 179.69333 * 8 7 6 10 10 C 1.40948 * 119.86767 * 0.53814 * 9 8 7 11 11 C 1.41041 * 120.11552 * 179.73440 * 10 9 8 12 12 H 1.07997 * 119.99993 * 209.60750 * 11 10 9 13 13 C 1.40075 * 119.99677 * 29.61374 * 11 10 9 14 14 N 1.30756 * 119.99438 * 197.07372 * 13 11 10 15 15 Si 1.86800 * 120.00292 * 17.07600 * 13 11 10 16 16 H 1.48499 * 109.47134 * 270.00316 * 15 13 11 17 17 H 1.48504 * 109.46974 * 30.00071 * 15 13 11 18 18 H 1.48494 * 109.46973 * 149.99820 * 15 13 11 19 19 C 1.40907 * 119.76548 * 359.46897 * 10 9 8 20 20 C 1.50696 * 120.06341 * 180.29740 * 19 10 9 21 21 C 1.36295 * 119.87257 * 0.26779 * 19 10 9 22 22 C 1.39964 * 118.22957 * 0.25485 * 6 5 4 23 23 C 1.38369 * 119.22200 * 359.47170 * 22 6 5 24 24 N 1.31522 * 121.07685 * 0.54673 * 23 22 6 25 25 H 1.09005 * 109.46648 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46900 * 299.99388 * 1 2 3 27 27 H 1.08994 * 109.47277 * 59.99802 * 1 2 3 28 28 H 1.07995 * 120.56451 * 0.02562 * 5 4 2 29 29 H 1.08001 * 119.93550 * 359.96069 * 8 7 6 30 30 H 1.07990 * 120.06897 * 180.28433 * 9 8 7 31 31 H 0.96992 * 120.00296 * 355.43829 * 14 13 11 32 32 H 1.08994 * 109.47274 * 89.99937 * 20 19 10 33 33 H 1.09003 * 109.47042 * 209.99571 * 20 19 10 34 34 H 1.09004 * 109.46933 * 329.99261 * 20 19 10 35 35 H 1.07996 * 119.93459 * 180.02562 * 21 19 10 36 36 H 1.07997 * 120.39038 * 179.72625 * 22 6 5 37 37 H 1.08003 * 119.45779 * 180.29868 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0498 0.0000 4 6 2.2448 -1.2778 -0.0006 5 6 3.6379 -1.2699 -0.0011 6 6 4.3203 -2.4915 -0.0011 7 6 5.7999 -2.5352 -0.0022 8 6 6.5326 -1.3431 -0.0028 9 6 7.8947 -1.3775 0.0025 10 6 8.5656 -2.6171 -0.0030 11 6 9.9754 -2.6588 -0.0032 12 1 10.4911 -3.4855 -0.4689 13 6 10.7066 -1.6280 0.6007 14 7 11.9758 -1.4783 0.3246 15 14 9.8685 -0.4672 1.8006 16 1 9.3152 0.6952 1.0604 17 1 8.7670 -1.1825 2.4937 18 1 10.8569 0.0082 2.8016 19 6 7.8228 -3.8145 -0.0025 20 6 8.5331 -5.1435 -0.0016 21 6 6.4606 -3.7684 -0.0023 22 6 3.5666 -3.6709 -0.0060 23 6 2.1853 -3.5899 0.0004 24 7 1.5736 -2.4256 0.0003 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 4.1818 -0.3369 -0.0007 29 1 6.0175 -0.3939 -0.0030 30 1 8.4592 -0.4569 0.0067 31 1 12.4269 -2.1197 -0.2463 32 1 8.7041 -5.4634 1.0262 33 1 7.9196 -5.8838 -0.5151 34 1 9.4894 -5.0447 -0.5153 35 1 5.8903 -4.6855 -0.0016 36 1 4.0574 -4.6329 -0.0106 37 1 1.6001 -4.4975 0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242611331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:39 Heat of formation + Delta-G solvation = 0.598643 kcal Electronic energy + Delta-G solvation = -20493.928477 eV Core-core repulsion = 17393.188963 eV Total energy + Delta-G solvation = -3100.739514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.28625 -38.79654 -38.05262 -34.46183 -33.06329 -31.90061 -31.20457 -30.08777 -29.37401 -26.58380 -25.33919 -23.76384 -22.84547 -21.60823 -20.15780 -19.18036 -18.35413 -17.03453 -16.21407 -15.86463 -15.13090 -14.97247 -14.75578 -14.37531 -14.23308 -14.03370 -13.63139 -13.47007 -13.10220 -12.54237 -12.44300 -12.33171 -12.14627 -12.00332 -11.79768 -11.45545 -11.34659 -11.05689 -10.70731 -10.37142 -10.11728 -10.02452 -9.63953 -9.47422 -9.22706 -9.11652 -8.99905 -7.89195 -7.78149 -7.38317 -4.77102 0.66897 1.25590 2.23114 2.53453 2.72361 3.08233 3.23196 3.41236 3.82043 3.88382 4.02788 4.43695 4.60125 5.01736 5.13806 5.14235 5.30685 5.34745 5.39706 5.46869 5.60525 5.72613 5.83984 5.96185 6.00877 6.07369 6.17163 6.32507 6.37233 6.40506 6.62525 6.67613 6.76051 6.88469 7.16819 7.21368 7.36325 7.39659 7.50610 7.60444 7.71167 8.08282 8.10940 8.26079 8.45750 9.70091 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022422 B = 0.004532 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.498312 B = 6177.198430 C = 7235.554411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.413 3.587 3 O -0.456 6.456 4 C 0.041 3.959 5 C -0.137 4.137 6 C 0.054 3.946 7 C -0.219 4.219 8 C -0.041 4.041 9 C -0.248 4.248 10 C 0.109 3.891 11 C -0.485 4.485 12 H 0.086 0.914 13 C 0.041 3.959 14 N -0.795 5.795 15 Si 1.072 2.928 16 H -0.273 1.273 17 H -0.260 1.260 18 H -0.287 1.287 19 C -0.190 4.190 20 C -0.086 4.086 21 C -0.045 4.045 22 C -0.176 4.176 23 C 0.100 3.900 24 N -0.480 5.480 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.140 0.860 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.290 0.710 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.135 0.865 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.490 -2.808 0.417 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.290 3.710 3 O -0.330 6.330 4 C -0.093 4.093 5 C -0.158 4.158 6 C 0.047 3.953 7 C -0.221 4.221 8 C -0.060 4.060 9 C -0.267 4.267 10 C 0.106 3.894 11 C -0.512 4.512 12 H 0.104 0.896 13 C -0.181 4.181 14 N -0.416 5.416 15 Si 0.898 3.102 16 H -0.199 1.199 17 H -0.184 1.184 18 H -0.214 1.214 19 C -0.191 4.191 20 C -0.143 4.143 21 C -0.064 4.064 22 C -0.196 4.196 23 C -0.059 4.059 24 N -0.193 5.193 25 H 0.115 0.885 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.158 0.842 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.153 0.847 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.703 -0.867 1.300 13.792 hybrid contribution 0.877 -1.607 -1.138 2.155 sum -12.827 -2.474 0.162 13.064 Atomic orbital electron populations 1.22092 0.93050 1.05827 1.03953 1.22434 0.91955 0.86428 0.70181 1.90533 1.72469 1.33641 1.36309 1.21417 0.91525 0.93810 1.02528 1.22329 0.93947 0.99393 1.00089 1.19299 0.93899 0.91811 0.90278 1.17864 0.88723 0.93836 1.21665 1.20486 0.93990 0.95952 0.95553 1.20843 0.93969 0.97474 1.14413 1.17747 0.93571 0.90710 0.87418 1.20909 0.91844 1.07930 1.30541 0.89579 1.27487 0.95432 0.97656 0.97555 1.70510 1.11692 1.31843 1.27549 0.83581 0.75300 0.75837 0.75516 1.19942 1.18438 1.21369 1.19477 0.92767 0.94775 1.12077 1.20432 0.99693 0.93697 1.00495 1.20320 0.93706 0.95296 0.97032 1.22389 0.94891 0.99239 1.03089 1.22514 0.92020 0.95183 0.96161 1.67450 1.40634 0.97754 1.13510 0.88464 0.89244 0.89245 0.84227 0.88138 0.87238 0.89810 0.93118 0.93957 0.92233 0.88256 0.84745 0.82803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.97 10.28 36.01 0.37 -1.60 16 2 C 0.41 5.99 7.24 -30.51 -0.22 5.77 16 3 O -0.46 -7.80 17.06 5.61 0.10 -7.71 16 4 C 0.04 0.65 6.73 -83.18 -0.56 0.09 16 5 C -0.14 -2.38 9.02 -38.55 -0.35 -2.73 16 6 C 0.05 0.96 5.91 -104.61 -0.62 0.34 16 7 C -0.22 -4.40 5.90 -104.63 -0.62 -5.02 16 8 C -0.04 -0.87 9.38 -39.66 -0.37 -1.24 16 9 C -0.25 -5.67 7.19 -39.27 -0.28 -5.96 16 10 C 0.11 2.58 5.13 -106.80 -0.55 2.03 16 11 C -0.49 -11.91 8.77 -37.83 -0.33 -12.24 16 12 H 0.09 2.14 6.51 -52.49 -0.34 1.80 16 13 C 0.04 0.99 5.42 -17.32 -0.09 0.90 16 14 N -0.80 -19.83 13.65 55.55 0.76 -19.07 16 15 Si 1.07 23.05 24.90 -169.99 -4.23 18.82 16 16 H -0.27 -5.62 6.45 56.52 0.36 -5.26 16 17 H -0.26 -5.61 7.02 56.52 0.40 -5.21 16 18 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 19 C -0.19 -4.07 5.90 -104.31 -0.62 -4.69 16 20 C -0.09 -1.60 9.61 36.00 0.35 -1.26 16 21 C -0.05 -0.89 9.02 -39.66 -0.36 -1.25 16 22 C -0.18 -2.62 9.51 -38.89 -0.37 -2.99 16 23 C 0.10 1.33 11.17 -17.64 -0.20 1.14 16 24 N -0.48 -7.03 9.14 -9.98 -0.09 -7.12 16 25 H 0.10 0.97 7.07 -51.93 -0.37 0.60 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.14 2.45 5.90 -52.49 -0.31 2.15 16 29 H 0.10 1.92 6.27 -52.49 -0.33 1.59 16 30 H 0.11 2.48 4.45 -52.49 -0.23 2.25 16 31 H 0.29 6.97 8.72 -40.82 -0.36 6.61 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.06 1.14 6.29 -51.93 -0.33 0.81 16 35 H 0.10 1.67 6.26 -52.49 -0.33 1.34 16 36 H 0.13 1.75 6.30 -52.49 -0.33 1.42 16 37 H 0.15 1.49 8.06 -52.48 -0.42 1.06 16 LS Contribution 309.81 15.07 4.67 4.67 Total: -1.00 -26.60 309.81 -7.49 -34.08 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -3.87 Total: 5.02 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -4.81 Total: -28.69 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.67 Total: -26.19 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.10 Total: -7.71 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.23 Total: 18.82 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.60 -7.49 -34.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242611331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.680 kcal (2) G-P(sol) polarization free energy of solvation -26.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds