Wall clock time and date at job start Tue Mar 31 2020 05:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21215 * 119.99958 * 2 1 4 4 C 1.47551 * 120.00241 * 180.02562 * 2 1 3 5 5 C 1.39308 * 119.67852 * 179.97438 * 4 2 1 6 6 C 1.39925 * 118.86626 * 179.97438 * 5 4 2 7 7 C 1.48024 * 120.88439 * 179.97438 * 6 5 4 8 8 C 1.39931 * 119.88173 * 0.02562 * 7 6 5 9 9 C 1.36255 * 120.12796 * 179.69333 * 8 7 6 10 10 C 1.40948 * 119.86767 * 0.53814 * 9 8 7 11 11 C 1.41041 * 120.11552 * 179.73440 * 10 9 8 12 12 H 1.07997 * 119.99993 * 209.60750 * 11 10 9 13 13 C 1.40075 * 119.99677 * 29.61374 * 11 10 9 14 14 N 1.30756 * 119.99438 * 197.07372 * 13 11 10 15 15 Si 1.86800 * 120.00292 * 17.07600 * 13 11 10 16 16 H 1.48499 * 109.47134 * 270.00316 * 15 13 11 17 17 H 1.48504 * 109.46974 * 30.00071 * 15 13 11 18 18 H 1.48494 * 109.46973 * 149.99820 * 15 13 11 19 19 C 1.40907 * 119.76548 * 359.46897 * 10 9 8 20 20 C 1.50696 * 120.06341 * 180.29740 * 19 10 9 21 21 C 1.36295 * 119.87257 * 0.26779 * 19 10 9 22 22 C 1.39964 * 118.22957 * 0.25485 * 6 5 4 23 23 C 1.38369 * 119.22200 * 359.47170 * 22 6 5 24 24 N 1.31522 * 121.07685 * 0.54673 * 23 22 6 25 25 H 1.09005 * 109.46648 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46900 * 299.99388 * 1 2 3 27 27 H 1.08994 * 109.47277 * 59.99802 * 1 2 3 28 28 H 1.07995 * 120.56451 * 0.02562 * 5 4 2 29 29 H 1.08001 * 119.93550 * 359.96069 * 8 7 6 30 30 H 1.07990 * 120.06897 * 180.28433 * 9 8 7 31 31 H 0.96992 * 120.00296 * 355.43829 * 14 13 11 32 32 H 1.08994 * 109.47274 * 89.99937 * 20 19 10 33 33 H 1.09003 * 109.47042 * 209.99571 * 20 19 10 34 34 H 1.09004 * 109.46933 * 329.99261 * 20 19 10 35 35 H 1.07996 * 119.93459 * 180.02562 * 21 19 10 36 36 H 1.07997 * 120.39038 * 179.72625 * 22 6 5 37 37 H 1.08003 * 119.45779 * 180.29868 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0498 0.0000 4 6 2.2448 -1.2778 -0.0006 5 6 3.6379 -1.2699 -0.0011 6 6 4.3203 -2.4915 -0.0011 7 6 5.7999 -2.5352 -0.0022 8 6 6.5326 -1.3431 -0.0028 9 6 7.8947 -1.3775 0.0025 10 6 8.5656 -2.6171 -0.0030 11 6 9.9754 -2.6588 -0.0032 12 1 10.4911 -3.4855 -0.4689 13 6 10.7066 -1.6280 0.6007 14 7 11.9758 -1.4783 0.3246 15 14 9.8685 -0.4672 1.8006 16 1 9.3152 0.6952 1.0604 17 1 8.7670 -1.1825 2.4937 18 1 10.8569 0.0082 2.8016 19 6 7.8228 -3.8145 -0.0025 20 6 8.5331 -5.1435 -0.0016 21 6 6.4606 -3.7684 -0.0023 22 6 3.5666 -3.6709 -0.0060 23 6 2.1853 -3.5899 0.0004 24 7 1.5736 -2.4256 0.0003 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 4.1818 -0.3369 -0.0007 29 1 6.0175 -0.3939 -0.0030 30 1 8.4592 -0.4569 0.0067 31 1 12.4269 -2.1197 -0.2463 32 1 8.7041 -5.4634 1.0262 33 1 7.9196 -5.8838 -0.5151 34 1 9.4894 -5.0447 -0.5153 35 1 5.8903 -4.6855 -0.0016 36 1 4.0574 -4.6329 -0.0106 37 1 1.6001 -4.4975 0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242611331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:38 Heat of formation + Delta-G solvation = -13.048194 kcal Electronic energy + Delta-G solvation = -20494.520248 eV Core-core repulsion = 17393.188963 eV Total energy + Delta-G solvation = -3101.331286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53568 -40.20230 -39.48002 -36.10112 -34.59487 -33.36119 -32.52514 -31.48214 -30.53588 -28.15057 -26.82982 -25.08306 -24.20144 -23.21733 -21.57030 -20.67423 -20.00392 -18.34222 -17.47137 -17.17604 -16.52846 -16.30428 -16.25777 -15.85765 -15.59566 -15.40866 -15.05599 -14.80086 -14.56099 -14.08521 -13.95908 -13.77228 -13.31651 -13.07466 -13.01110 -12.98962 -12.74331 -12.71251 -12.36246 -11.96016 -11.74646 -11.30088 -11.24579 -11.11557 -10.77832 -10.42617 -10.19481 -9.54895 -9.52732 -9.08787 -6.58732 -0.55706 -0.11808 0.83126 0.90254 1.27717 1.35918 1.53141 1.69587 2.09197 2.51974 2.78593 2.94121 3.42926 3.47655 3.78056 3.96518 4.04069 4.12275 4.17759 4.22810 4.43483 4.56162 4.65569 4.66390 4.71191 4.81315 4.84182 4.93850 4.96684 5.08765 5.11797 5.17033 5.25965 5.40742 5.51234 5.61367 5.73191 5.83048 5.93200 6.02962 6.29759 6.34068 6.55348 6.71743 6.88376 7.89937 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022422 B = 0.004532 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.498312 B = 6177.198430 C = 7235.554411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.411 3.589 3 O -0.491 6.491 4 C 0.031 3.969 5 C -0.150 4.150 6 C 0.025 3.975 7 C -0.201 4.201 8 C -0.060 4.060 9 C -0.262 4.262 10 C 0.087 3.913 11 C -0.523 4.523 12 H 0.067 0.933 13 C 0.015 3.985 14 N -0.831 5.831 15 Si 1.099 2.901 16 H -0.264 1.264 17 H -0.264 1.264 18 H -0.279 1.279 19 C -0.200 4.200 20 C -0.083 4.083 21 C -0.049 4.049 22 C -0.159 4.159 23 C 0.107 3.893 24 N -0.466 5.466 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.127 0.873 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.283 0.717 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.139 0.861 36 H 0.161 0.839 37 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.343 -4.515 0.661 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.290 3.710 3 O -0.367 6.367 4 C -0.103 4.103 5 C -0.170 4.170 6 C 0.018 3.982 7 C -0.202 4.202 8 C -0.078 4.078 9 C -0.281 4.281 10 C 0.084 3.916 11 C -0.551 4.551 12 H 0.085 0.915 13 C -0.201 4.201 14 N -0.454 5.454 15 Si 0.921 3.079 16 H -0.190 1.190 17 H -0.189 1.189 18 H -0.205 1.205 19 C -0.201 4.201 20 C -0.140 4.140 21 C -0.067 4.067 22 C -0.178 4.178 23 C -0.052 4.052 24 N -0.179 5.179 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.144 0.856 29 H 0.131 0.869 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.157 0.843 36 H 0.179 0.821 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -18.565 -2.581 1.538 18.807 hybrid contribution 1.806 -1.209 -1.266 2.515 sum -16.760 -3.790 0.273 17.185 Atomic orbital electron populations 1.22109 0.89314 1.06873 1.05602 1.23030 0.93826 0.85340 0.68780 1.90532 1.73495 1.34563 1.38100 1.21705 0.91030 0.95099 1.02444 1.22373 0.95003 0.99038 1.00629 1.19302 0.92684 0.93307 0.92902 1.18275 0.90417 0.93568 1.17916 1.20727 0.93530 0.97434 0.96126 1.20937 0.94830 0.97226 1.15105 1.17972 0.93462 0.91989 0.88142 1.20771 0.92550 1.08352 1.33448 0.91493 1.28167 0.95493 0.98478 0.97966 1.70558 1.12331 1.32754 1.29794 0.83240 0.74746 0.75187 0.74714 1.19049 1.18894 1.20537 1.19911 0.93858 0.95222 1.11089 1.20435 0.99250 0.93083 1.01201 1.20688 0.93209 0.96681 0.96114 1.22761 0.95616 0.99083 1.00367 1.23306 0.91835 0.96188 0.93868 1.67579 1.40439 0.97832 1.12086 0.87684 0.87457 0.87463 0.85559 0.86903 0.87943 0.90570 0.92365 0.90731 0.93895 0.84312 0.82124 0.78035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 10.28 71.24 0.73 -2.32 16 2 C 0.41 10.94 7.24 28.15 0.20 11.14 16 3 O -0.49 -16.30 17.06 -2.83 -0.05 -16.35 16 4 C 0.03 0.90 6.73 41.69 0.28 1.18 16 5 C -0.15 -4.92 9.02 22.94 0.21 -4.71 16 6 C 0.03 0.82 5.91 -19.85 -0.12 0.70 16 7 C -0.20 -7.65 5.90 -19.87 -0.12 -7.77 16 8 C -0.06 -2.52 9.38 22.22 0.21 -2.31 16 9 C -0.26 -12.29 7.19 22.47 0.16 -12.12 16 10 C 0.09 4.25 5.13 -21.27 -0.11 4.14 16 11 C -0.52 -27.26 8.77 23.40 0.21 -27.05 16 12 H 0.07 3.61 6.51 -2.91 -0.02 3.59 16 13 C 0.01 0.77 5.42 85.30 0.46 1.24 16 14 N -0.83 -44.25 13.65 21.85 0.30 -43.95 16 15 Si 1.10 48.60 24.90 68.60 1.71 50.31 16 16 H -0.26 -11.13 6.45 99.48 0.64 -10.49 16 17 H -0.26 -11.66 7.02 99.48 0.70 -10.96 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 19 C -0.20 -8.42 5.90 -19.66 -0.12 -8.54 16 20 C -0.08 -2.99 9.61 71.23 0.68 -2.31 16 21 C -0.05 -1.79 9.02 22.22 0.20 -1.59 16 22 C -0.16 -3.86 9.51 22.72 0.22 -3.65 16 23 C 0.11 2.20 11.17 84.77 0.95 3.15 16 24 N -0.47 -11.39 9.14 -185.48 -1.69 -13.09 16 25 H 0.10 1.61 7.07 -2.38 -0.02 1.59 16 26 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.13 4.42 5.90 -2.91 -0.02 4.40 16 29 H 0.11 4.36 6.27 -2.91 -0.02 4.34 16 30 H 0.10 4.84 4.45 -2.92 -0.01 4.83 16 31 H 0.28 14.76 8.72 -92.71 -0.81 13.95 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.07 2.15 8.08 -2.39 -0.02 2.13 16 34 H 0.04 1.68 6.29 -2.38 -0.01 1.66 16 35 H 0.14 3.92 6.26 -2.91 -0.02 3.90 16 36 H 0.16 3.08 6.30 -2.91 -0.02 3.07 16 37 H 0.20 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -61.11 309.81 5.31 -55.80 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.00 Total: 18.10 kcal Atomic # 6 Polarization: -54.87 SS G_CDS: 4.05 Total: -50.82 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -1.40 Total: -57.04 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.05 Total: -16.35 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.71 Total: 50.31 kcal Total: -61.11 5.31 -55.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242611331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.747 kcal (2) G-P(sol) polarization free energy of solvation -61.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds