Wall clock time and date at job start Tue Mar 31 2020 05:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30770 * 1 3 3 Si 1.86803 * 120.00387 * 2 1 4 4 H 1.48495 * 109.47252 * 240.00530 * 3 2 1 5 5 H 1.48504 * 109.46618 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.46870 * 120.00204 * 3 2 1 7 7 C 1.40073 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99995 * 169.90907 * 7 2 1 9 9 C 1.40888 * 119.99934 * 349.91752 * 7 2 1 10 10 C 1.41122 * 120.71893 * 330.42889 * 9 7 2 11 11 C 1.36879 * 118.39688 * 180.24749 * 10 9 7 12 12 C 1.38872 * 119.79869 * 359.75278 * 11 10 9 13 13 N 1.31748 * 121.50166 * 359.97383 * 12 11 10 14 14 C 1.32576 * 121.72045 * 0.02562 * 13 12 11 15 15 C 1.47828 * 119.98769 * 179.97438 * 14 13 12 16 16 C 1.39719 * 120.12430 * 136.97703 * 15 14 13 17 17 C 1.37931 * 119.95675 * 180.24930 * 16 15 14 18 18 C 1.38319 * 120.20946 * 359.45585 * 17 16 15 19 19 C 1.38869 * 120.25523 * 0.29413 * 18 17 16 20 20 O 1.35904 * 119.98530 * 179.97438 * 19 18 17 21 21 C 1.42901 * 116.99618 * 355.26980 * 20 19 18 22 22 C 1.53002 * 117.49599 * 225.35801 * 21 20 19 23 23 C 1.53006 * 117.49675 * 156.70212 * 21 20 19 24 24 C 1.38446 * 120.03630 * 359.97438 * 19 18 17 25 25 H 0.96999 * 119.99624 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.80140 * 359.97157 * 10 9 7 27 27 H 1.08001 * 120.10395 * 179.72412 * 11 10 9 28 28 H 1.07993 * 119.24976 * 179.97438 * 12 11 10 29 29 H 1.08004 * 120.02032 * 0.02562 * 16 15 14 30 30 H 1.07998 * 119.89118 * 179.72578 * 17 16 15 31 31 H 1.07998 * 119.87819 * 180.27647 * 18 17 16 32 32 H 1.09000 * 115.55143 * 11.03394 * 21 20 19 33 33 H 1.09002 * 117.49980 * 0.02562 * 22 21 20 34 34 H 1.09004 * 117.49552 * 145.02261 * 22 21 20 35 35 H 1.08997 * 117.49688 * 214.98256 * 23 21 20 36 36 H 1.09004 * 117.49805 * 0.02562 * 23 21 20 37 37 H 1.08006 * 120.10554 * 179.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 3.0955 1.6964 -1.2125 5 1 1.2768 2.7464 0.0006 6 1 3.0956 1.6962 1.2124 7 6 2.0080 -1.2131 -0.0005 8 1 3.0756 -1.2203 -0.1644 9 6 1.3199 -2.4239 0.2125 10 6 0.1518 -2.4596 1.0036 11 6 -0.4761 -3.6625 1.1835 12 6 0.0396 -4.8060 0.5876 13 7 1.1275 -4.7649 -0.1543 14 6 1.7830 -3.6325 -0.3681 15 6 3.0003 -3.6305 -1.2069 16 6 3.2011 -2.6183 -2.1489 17 6 4.3356 -2.6227 -2.9333 18 6 5.2819 -3.6202 -2.7828 19 6 5.0938 -4.6276 -1.8456 20 8 6.0269 -5.6053 -1.7028 21 6 7.1238 -5.5939 -2.6185 22 6 7.5292 -6.9264 -3.2518 23 6 8.4164 -6.2861 -2.1812 24 6 3.9561 -4.6364 -1.0567 25 1 -0.4849 0.8401 0.0004 26 1 -0.2349 -1.5603 1.4599 27 1 -1.3695 -3.7223 1.7874 28 1 -0.4627 -5.7505 0.7358 29 1 2.4666 -1.8351 -2.2653 30 1 4.4876 -1.8422 -3.6641 31 1 6.1705 -3.6159 -3.3967 32 1 7.2157 -4.6969 -3.2310 33 1 6.9590 -7.8116 -2.9703 34 1 7.8882 -6.9059 -4.2809 35 1 9.3585 -5.8447 -2.5062 36 1 8.4298 -6.7506 -1.1951 37 1 3.8084 -5.4196 -0.3278 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242803311.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:05 Heat of formation + Delta-G solvation = 31.092846 kcal Electronic energy + Delta-G solvation = -20730.276359 eV Core-core repulsion = 17630.859173 eV Total energy + Delta-G solvation = -3099.417187 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.16519 -40.26680 -38.52046 -36.18129 -35.95573 -33.30668 -32.49182 -31.11042 -29.90110 -27.58356 -25.10467 -23.87521 -23.33521 -23.13277 -22.86483 -21.22371 -19.42792 -19.18048 -17.48348 -17.09297 -16.82068 -16.70170 -16.15420 -15.88904 -15.66514 -15.26096 -15.02583 -14.61823 -14.27294 -14.18487 -13.77457 -13.37800 -13.25210 -13.18287 -12.88334 -12.78100 -12.43834 -12.42151 -12.21925 -11.92787 -11.60805 -11.30655 -11.19466 -10.93602 -10.34482 -9.98647 -9.92563 -9.23064 -8.93427 -8.66800 -6.43066 0.15514 0.61763 0.87699 1.16267 1.39568 1.50638 1.53281 2.12897 2.18118 2.71697 2.79960 3.00765 3.63941 3.67389 3.88155 3.96490 3.99995 4.06892 4.25222 4.38623 4.46503 4.56673 4.61979 4.71445 4.73241 4.80405 4.87023 4.98922 5.03476 5.14577 5.20523 5.20851 5.27001 5.42464 5.62109 5.75861 5.79099 5.95277 6.01785 6.03980 6.48189 6.58717 6.72071 6.78091 7.67152 8.23979 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.005086 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.109075 B = 5503.493178 C = 6760.661015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.039 3.961 3 Si 0.980 3.020 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.085 0.915 9 C 0.060 3.940 10 C -0.149 4.149 11 C -0.148 4.148 12 C -0.039 4.039 13 N -0.472 5.472 14 C -0.008 4.008 15 C 0.035 3.965 16 C -0.143 4.143 17 C -0.080 4.080 18 C -0.213 4.213 19 C 0.121 3.879 20 O -0.307 6.307 21 C -0.029 4.029 22 C -0.179 4.179 23 C -0.162 4.162 24 C -0.161 4.161 25 H 0.293 0.707 26 H 0.120 0.880 27 H 0.132 0.868 28 H 0.152 0.848 29 H 0.118 0.882 30 H 0.155 0.845 31 H 0.161 0.839 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.094 0.906 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.813 -2.451 -6.013 13.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.485 4.485 8 H 0.103 0.897 9 C 0.055 3.945 10 C -0.175 4.175 11 C -0.168 4.168 12 C -0.200 4.200 13 N -0.180 5.180 14 C -0.145 4.145 15 C 0.034 3.966 16 C -0.162 4.162 17 C -0.098 4.098 18 C -0.232 4.232 19 C 0.077 3.923 20 O -0.222 6.222 21 C -0.085 4.085 22 C -0.216 4.216 23 C -0.199 4.199 24 C -0.181 4.181 25 H 0.104 0.896 26 H 0.138 0.862 27 H 0.150 0.850 28 H 0.170 0.830 29 H 0.136 0.864 30 H 0.172 0.828 31 H 0.179 0.821 32 H 0.160 0.840 33 H 0.109 0.891 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.112 0.888 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.899 -3.223 -6.245 13.819 hybrid contribution -0.724 1.294 0.763 1.668 sum 11.175 -1.930 -5.482 12.595 Atomic orbital electron populations 1.69772 1.08968 1.31174 1.34394 1.26781 0.95525 1.04336 0.91138 0.85259 0.78870 0.75415 0.80465 1.17618 1.19051 1.18654 1.19690 0.96196 0.90496 1.42104 0.89706 1.18678 0.92682 0.93420 0.89686 1.21516 0.98417 0.97378 1.00178 1.21762 1.00496 0.93743 1.00791 1.22265 0.96392 0.98386 1.02955 1.67102 1.07718 1.29268 1.13919 1.19946 0.99621 0.90047 1.04929 1.18267 0.91273 0.93527 0.93541 1.21348 0.99509 0.98892 0.96493 1.21122 0.92315 0.98151 0.98200 1.21420 1.02878 0.96493 1.02369 1.18765 0.88707 0.89086 0.95787 1.85970 1.33199 1.48335 1.54658 1.23476 0.88055 0.99526 0.97429 1.23557 1.02458 0.95710 0.99830 1.23474 0.93949 1.02345 1.00109 1.20378 0.93534 1.01047 1.03131 0.89590 0.86191 0.84978 0.83047 0.86356 0.82758 0.82149 0.84050 0.89054 0.85269 0.84889 0.88792 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.09 10.90 21.85 0.24 -39.85 16 2 C 0.04 1.82 5.28 85.30 0.45 2.27 16 3 Si 0.98 35.79 29.57 68.60 2.03 37.82 16 4 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 5 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 6 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 7 C -0.46 -23.30 6.65 23.36 0.16 -23.15 16 8 H 0.08 4.27 6.53 -2.91 -0.02 4.25 16 9 C 0.06 3.22 5.54 -21.03 -0.12 3.10 16 10 C -0.15 -7.69 8.71 22.66 0.20 -7.49 16 11 C -0.15 -6.83 10.03 22.10 0.22 -6.60 16 12 C -0.04 -1.83 11.16 84.86 0.95 -0.89 16 13 N -0.47 -24.45 10.15 -182.92 -1.86 -26.31 16 14 C -0.01 -0.42 6.43 42.47 0.27 -0.15 16 15 C 0.03 1.66 5.27 -20.06 -0.11 1.55 16 16 C -0.14 -6.08 7.86 22.56 0.18 -5.90 16 17 C -0.08 -2.65 10.03 22.22 0.22 -2.43 16 18 C -0.21 -6.59 9.18 22.44 0.21 -6.39 16 19 C 0.12 4.47 6.67 22.47 0.15 4.62 16 20 O -0.31 -10.29 10.39 -92.47 -0.96 -11.25 16 21 C -0.03 -0.67 6.20 30.60 0.19 -0.48 16 22 C -0.18 -3.17 10.48 30.62 0.32 -2.85 16 23 C -0.16 -2.78 10.48 30.62 0.32 -2.46 16 24 C -0.16 -7.13 9.60 22.64 0.22 -6.91 16 25 H 0.29 12.96 8.29 -92.71 -0.77 12.19 16 26 H 0.12 6.26 6.36 -2.91 -0.02 6.24 16 27 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 28 H 0.15 5.95 8.06 -2.91 -0.02 5.93 16 29 H 0.12 5.37 6.71 -2.91 -0.02 5.35 16 30 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 31 H 0.16 3.56 5.50 -2.91 -0.02 3.54 16 32 H 0.14 2.62 5.33 -2.39 -0.01 2.60 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 37 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -63.00 315.42 4.37 -58.63 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 1.09 Total: 35.12 kcal Atomic # 6 Polarization: -57.98 SS G_CDS: 3.83 Total: -54.15 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -1.62 Total: -66.16 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.96 Total: -11.25 kcal Atomic # 14 Polarization: 35.79 SS G_CDS: 2.03 Total: 37.82 kcal Total: -63.00 4.37 -58.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242803311.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.724 kcal (2) G-P(sol) polarization free energy of solvation -63.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds