Wall clock time and date at job start Tue Mar 31 2020 05:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30791 * 1 3 3 Si 1.86804 * 119.99960 * 2 1 4 4 H 1.48505 * 109.46536 * 85.68314 * 3 2 1 5 5 H 1.48499 * 109.47283 * 205.67975 * 3 2 1 6 6 H 1.48498 * 109.47217 * 325.68723 * 3 2 1 7 7 C 1.40027 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99887 * 198.52041 * 7 2 1 9 9 C 1.41045 * 120.00219 * 18.52995 * 7 2 1 10 10 C 1.41299 * 120.55347 * 200.42529 * 9 7 2 11 11 C 1.36613 * 118.41195 * 179.72354 * 10 9 7 12 12 C 1.39888 * 119.46799 * 0.52335 * 11 10 9 13 13 C 1.47971 * 119.45358 * 179.75904 * 12 11 10 14 14 C 1.39649 * 120.11505 * 4.97748 * 13 12 11 15 15 C 1.37951 * 119.96511 * 180.02562 * 14 13 12 16 16 C 1.38317 * 120.20080 * 0.02562 * 15 14 13 17 17 C 1.38852 * 120.23998 * 0.02562 * 16 15 14 18 18 O 1.35912 * 119.98514 * 180.02562 * 17 16 15 19 19 C 1.42901 * 116.99542 * 3.74796 * 18 17 16 20 20 C 1.52999 * 117.49773 * 225.60168 * 19 18 17 21 21 C 1.53002 * 117.49366 * 156.94190 * 19 18 17 22 22 C 1.38464 * 120.03306 * 359.72037 * 17 16 15 23 23 N 1.33016 * 121.10065 * 359.74156 * 12 11 10 24 24 C 1.31275 * 121.72541 * 359.97438 * 23 12 11 25 25 H 0.96994 * 119.99920 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.79541 * 359.97438 * 10 9 7 27 27 H 1.08001 * 120.26653 * 180.25948 * 11 10 9 28 28 H 1.08001 * 120.01752 * 359.97438 * 14 13 12 29 29 H 1.07996 * 119.90040 * 180.02562 * 15 14 13 30 30 H 1.07999 * 119.88020 * 179.97438 * 16 15 14 31 31 H 1.08999 * 115.55112 * 11.28001 * 19 18 17 32 32 H 1.09000 * 117.49938 * 0.02562 * 20 19 18 33 33 H 1.08994 * 117.50125 * 145.02931 * 20 19 18 34 34 H 1.09003 * 117.49920 * 214.97897 * 21 19 18 35 35 H 1.09000 * 117.50109 * 0.02562 * 21 19 18 36 36 H 1.08001 * 120.10654 * 180.27703 * 22 17 16 37 37 H 1.07993 * 119.79897 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3981 2.0990 1.3962 5 1 3.5822 1.4156 -0.6067 6 1 1.4879 2.6247 -0.7892 7 6 2.0080 -1.2127 -0.0005 8 1 3.0461 -1.2370 0.2966 9 6 1.3577 -2.4023 -0.3893 10 6 1.8716 -3.6608 -0.0037 11 6 1.2035 -4.7848 -0.3995 12 6 0.0473 -4.6601 -1.1770 13 6 -0.6731 -5.8778 -1.6101 14 6 -0.2610 -7.1335 -1.1589 15 6 -0.9345 -8.2668 -1.5651 16 6 -2.0177 -8.1640 -2.4191 17 6 -2.4340 -6.9198 -2.8738 18 8 -3.4993 -6.8247 -3.7125 19 6 -4.1934 -8.0355 -4.0193 20 6 -4.5514 -8.2927 -5.4844 21 6 -5.6468 -7.9185 -4.4827 22 6 -1.7684 -5.7754 -2.4682 23 7 -0.4156 -3.4650 -1.5332 24 6 0.1873 -2.3558 -1.1733 25 1 -0.4850 0.8400 0.0004 26 1 2.7688 -3.7324 0.5932 27 1 1.5674 -5.7619 -0.1181 28 1 0.5851 -7.2174 -0.4930 29 1 -0.6152 -9.2373 -1.2152 30 1 -2.5409 -9.0547 -2.7342 31 1 -3.9282 -8.8975 -3.4072 32 1 -4.2572 -7.5385 -6.2143 33 1 -4.5222 -9.3239 -5.8362 34 1 -6.3377 -8.7038 -4.1759 35 1 -6.0734 -6.9179 -4.5540 36 1 -2.0940 -4.8067 -2.8176 37 1 -0.2159 -1.4020 -1.4796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242803361.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:11 Heat of formation + Delta-G solvation = 41.985411 kcal Electronic energy + Delta-G solvation = -20083.911208 eV Core-core repulsion = 16984.966358 eV Total energy + Delta-G solvation = -3098.944849 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.87970 -38.59073 -37.29568 -35.18241 -34.22928 -31.54277 -30.98660 -29.71582 -28.57238 -25.68596 -23.51638 -22.73141 -22.57895 -21.70661 -21.03427 -19.92025 -18.11165 -17.67800 -16.08931 -15.61475 -15.48919 -15.32727 -14.69519 -14.49597 -14.28307 -13.80754 -13.55551 -13.24592 -12.84787 -12.70292 -12.35229 -11.90807 -11.73931 -11.65291 -11.51270 -11.34594 -11.14659 -10.98989 -10.87680 -10.68274 -10.36180 -10.12885 -10.00426 -9.58757 -8.74487 -8.44681 -7.94889 -7.80601 -7.29469 -7.11540 -4.60023 1.52217 1.94134 2.65765 2.90403 2.92192 2.97122 3.10518 3.19328 3.64705 3.69460 4.20743 4.56096 4.60934 4.75952 4.92782 5.11835 5.25509 5.35865 5.42366 5.58393 5.64054 5.72811 5.75160 5.92282 5.99226 6.09616 6.14669 6.34442 6.51027 6.65970 6.74199 6.84323 6.86389 6.91094 7.12669 7.17322 7.28762 7.58664 7.71468 7.81707 7.91740 8.13676 8.48134 8.57813 9.64841 9.80565 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028292 B = 0.003364 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.442466 B = 8320.298435 C = 9162.955337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.267 1.267 5 H -0.257 1.257 6 H -0.271 1.271 7 C -0.426 4.426 8 H 0.086 0.914 9 C 0.067 3.933 10 C -0.209 4.209 11 C -0.103 4.103 12 C -0.023 4.023 13 C 0.061 3.939 14 C -0.171 4.171 15 C -0.079 4.079 16 C -0.240 4.240 17 C 0.127 3.873 18 O -0.285 6.285 19 C 0.007 3.993 20 C -0.188 4.188 21 C -0.175 4.175 22 C -0.145 4.145 23 N -0.451 5.451 24 C 0.039 3.961 25 H 0.290 0.710 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.136 0.864 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.647 -10.568 -4.535 12.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.151 4.151 3 Si 0.741 3.259 4 H -0.192 1.192 5 H -0.180 1.180 6 H -0.195 1.195 7 C -0.455 4.455 8 H 0.104 0.896 9 C 0.061 3.939 10 C -0.234 4.234 11 C -0.123 4.123 12 C -0.153 4.153 13 C 0.060 3.940 14 C -0.190 4.190 15 C -0.097 4.097 16 C -0.259 4.259 17 C 0.083 3.917 18 O -0.199 6.199 19 C -0.050 4.050 20 C -0.225 4.225 21 C -0.212 4.212 22 C -0.164 4.164 23 N -0.159 5.159 24 C -0.129 4.129 25 H 0.102 0.898 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.154 0.846 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.686 -10.253 -5.108 12.789 hybrid contribution 1.111 0.486 0.695 1.397 sum -4.575 -9.767 -4.413 11.654 Atomic orbital electron populations 1.69745 1.07898 1.30482 1.30992 1.26159 0.94890 1.02190 0.91888 0.86122 0.80736 0.79588 0.79450 1.19158 1.18043 1.19531 1.19722 0.98567 0.91065 1.36122 0.89566 1.18666 0.92903 0.92743 0.89540 1.20957 1.02956 0.92554 1.06925 1.21174 0.95622 0.97767 0.97702 1.18750 0.97768 0.90279 1.08523 1.18453 0.91716 0.91853 0.91954 1.21093 1.02336 0.91666 1.03953 1.20658 0.94682 0.97927 0.96440 1.20979 1.02591 0.95969 1.06366 1.18873 0.87552 0.94172 0.91078 1.86025 1.41124 1.31004 1.61749 1.22964 0.95196 0.89179 0.97698 1.23452 1.02900 1.02995 0.93175 1.23345 0.91215 1.03813 1.02803 1.20502 0.97395 0.96963 1.01521 1.67138 1.30975 0.98103 1.19670 1.23116 0.95847 0.95034 0.98952 0.89824 0.87786 0.87938 0.86102 0.86527 0.86299 0.85873 0.87912 0.88025 0.87799 0.87850 0.84570 0.82585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.46 10.76 55.55 0.60 -17.87 16 2 C 0.07 1.62 5.17 -17.32 -0.09 1.53 16 3 Si 0.92 17.03 29.60 -169.99 -5.03 11.99 16 4 H -0.27 -4.88 7.11 56.52 0.40 -4.47 16 5 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 6 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.43 -10.48 9.07 -37.85 -0.34 -10.83 16 8 H 0.09 1.99 7.91 -52.48 -0.42 1.58 16 9 C 0.07 1.72 5.63 -106.64 -0.60 1.12 16 10 C -0.21 -4.97 9.88 -39.01 -0.39 -5.36 16 11 C -0.10 -2.31 9.37 -39.55 -0.37 -2.69 16 12 C -0.02 -0.56 6.73 -82.75 -0.56 -1.11 16 13 C 0.06 1.30 5.87 -104.91 -0.62 0.68 16 14 C -0.17 -3.06 9.41 -39.16 -0.37 -3.43 16 15 C -0.08 -1.21 10.03 -39.66 -0.40 -1.61 16 16 C -0.24 -3.72 9.13 -39.32 -0.36 -4.08 16 17 C 0.13 2.29 6.68 -39.27 -0.26 2.02 16 18 O -0.29 -4.77 10.39 -19.46 -0.20 -4.98 16 19 C 0.01 0.08 6.12 -26.73 -0.16 -0.08 16 20 C -0.19 -1.86 10.48 -26.69 -0.28 -2.14 16 21 C -0.17 -1.72 10.48 -26.69 -0.28 -2.00 16 22 C -0.14 -2.98 9.51 -39.02 -0.37 -3.36 16 23 N -0.45 -11.71 9.40 -9.10 -0.09 -11.79 16 24 C 0.04 1.04 9.93 -16.76 -0.17 0.87 16 25 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 26 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 27 H 0.10 1.97 6.18 -52.49 -0.32 1.64 16 28 H 0.12 1.96 6.18 -52.49 -0.32 1.64 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.12 1.47 5.61 -52.49 -0.29 1.18 16 31 H 0.12 1.31 5.47 -51.93 -0.28 1.03 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.14 3.00 7.53 -52.49 -0.40 2.60 16 37 H 0.16 4.16 5.91 -52.49 -0.31 3.85 16 LS Contribution 316.71 15.07 4.77 4.77 Total: -1.00 -27.82 316.71 -9.58 -37.40 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.02 Total: 10.91 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -5.61 Total: -30.45 kcal Atomic # 7 Polarization: -30.17 SS G_CDS: 0.51 Total: -29.66 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.20 Total: -4.98 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 11.99 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.82 -9.58 -37.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242803361.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.386 kcal (2) G-P(sol) polarization free energy of solvation -27.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds