Wall clock time and date at job start Tue Mar 31 2020 05:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30791 * 1 3 3 Si 1.86804 * 119.99960 * 2 1 4 4 H 1.48505 * 109.46536 * 85.68314 * 3 2 1 5 5 H 1.48499 * 109.47283 * 205.67975 * 3 2 1 6 6 H 1.48498 * 109.47217 * 325.68723 * 3 2 1 7 7 C 1.40027 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99887 * 198.52041 * 7 2 1 9 9 C 1.41045 * 120.00219 * 18.52995 * 7 2 1 10 10 C 1.41299 * 120.55347 * 200.42529 * 9 7 2 11 11 C 1.36613 * 118.41195 * 179.72354 * 10 9 7 12 12 C 1.39888 * 119.46799 * 0.52335 * 11 10 9 13 13 C 1.47971 * 119.45358 * 179.75904 * 12 11 10 14 14 C 1.39649 * 120.11505 * 4.97748 * 13 12 11 15 15 C 1.37951 * 119.96511 * 180.02562 * 14 13 12 16 16 C 1.38317 * 120.20080 * 0.02562 * 15 14 13 17 17 C 1.38852 * 120.23998 * 0.02562 * 16 15 14 18 18 O 1.35912 * 119.98514 * 180.02562 * 17 16 15 19 19 C 1.42901 * 116.99542 * 3.74796 * 18 17 16 20 20 C 1.52999 * 117.49773 * 225.60168 * 19 18 17 21 21 C 1.53002 * 117.49366 * 156.94190 * 19 18 17 22 22 C 1.38464 * 120.03306 * 359.72037 * 17 16 15 23 23 N 1.33016 * 121.10065 * 359.74156 * 12 11 10 24 24 C 1.31275 * 121.72541 * 359.97438 * 23 12 11 25 25 H 0.96994 * 119.99920 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.79541 * 359.97438 * 10 9 7 27 27 H 1.08001 * 120.26653 * 180.25948 * 11 10 9 28 28 H 1.08001 * 120.01752 * 359.97438 * 14 13 12 29 29 H 1.07996 * 119.90040 * 180.02562 * 15 14 13 30 30 H 1.07999 * 119.88020 * 179.97438 * 16 15 14 31 31 H 1.08999 * 115.55112 * 11.28001 * 19 18 17 32 32 H 1.09000 * 117.49938 * 0.02562 * 20 19 18 33 33 H 1.08994 * 117.50125 * 145.02931 * 20 19 18 34 34 H 1.09003 * 117.49920 * 214.97897 * 21 19 18 35 35 H 1.09000 * 117.50109 * 0.02562 * 21 19 18 36 36 H 1.08001 * 120.10654 * 180.27703 * 22 17 16 37 37 H 1.07993 * 119.79897 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3981 2.0990 1.3962 5 1 3.5822 1.4156 -0.6067 6 1 1.4879 2.6247 -0.7892 7 6 2.0080 -1.2127 -0.0005 8 1 3.0461 -1.2370 0.2966 9 6 1.3577 -2.4023 -0.3893 10 6 1.8716 -3.6608 -0.0037 11 6 1.2035 -4.7848 -0.3995 12 6 0.0473 -4.6601 -1.1770 13 6 -0.6731 -5.8778 -1.6101 14 6 -0.2610 -7.1335 -1.1589 15 6 -0.9345 -8.2668 -1.5651 16 6 -2.0177 -8.1640 -2.4191 17 6 -2.4340 -6.9198 -2.8738 18 8 -3.4993 -6.8247 -3.7125 19 6 -4.1934 -8.0355 -4.0193 20 6 -4.5514 -8.2927 -5.4844 21 6 -5.6468 -7.9185 -4.4827 22 6 -1.7684 -5.7754 -2.4682 23 7 -0.4156 -3.4650 -1.5332 24 6 0.1873 -2.3558 -1.1733 25 1 -0.4850 0.8400 0.0004 26 1 2.7688 -3.7324 0.5932 27 1 1.5674 -5.7619 -0.1181 28 1 0.5851 -7.2174 -0.4930 29 1 -0.6152 -9.2373 -1.2152 30 1 -2.5409 -9.0547 -2.7342 31 1 -3.9282 -8.8975 -3.4072 32 1 -4.2572 -7.5385 -6.2143 33 1 -4.5222 -9.3239 -5.8362 34 1 -6.3377 -8.7038 -4.1759 35 1 -6.0734 -6.9179 -4.5540 36 1 -2.0940 -4.8067 -2.8176 37 1 -0.2159 -1.4020 -1.4796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242803361.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:09 Heat of formation + Delta-G solvation = 27.924887 kcal Electronic energy + Delta-G solvation = -20084.520918 eV Core-core repulsion = 16984.966358 eV Total energy + Delta-G solvation = -3099.554560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.17415 -40.26696 -38.61462 -36.31854 -35.88948 -33.25609 -32.70839 -31.19871 -30.14516 -27.40395 -24.84229 -24.33655 -23.36794 -23.21291 -22.61226 -21.29017 -19.49577 -19.39221 -17.57296 -17.09796 -16.82976 -16.71419 -16.13221 -15.93124 -15.57461 -15.31719 -14.82018 -14.68376 -14.50770 -14.28659 -13.71673 -13.45690 -13.29474 -13.06980 -12.91843 -12.71846 -12.57763 -12.46679 -12.32437 -11.94473 -11.75079 -11.34797 -11.30777 -10.98223 -10.41331 -10.21784 -9.82801 -9.25065 -8.93509 -8.83443 -6.46723 0.00512 0.57090 1.00549 1.06471 1.38076 1.52566 1.57999 2.10819 2.13537 2.56875 2.81008 3.04257 3.64391 3.74915 3.82589 3.94360 3.97930 4.05442 4.12420 4.33452 4.40469 4.44860 4.59170 4.70830 4.71632 4.80107 4.85103 4.96269 5.03096 5.07339 5.16528 5.17990 5.29384 5.41297 5.49870 5.61199 5.74246 5.91857 5.98166 6.06351 6.29865 6.56647 6.64261 6.71479 7.75467 8.10477 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028292 B = 0.003364 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.442466 B = 8320.298435 C = 9162.955337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.031 3.969 3 Si 0.996 3.004 4 H -0.257 1.257 5 H -0.253 1.253 6 H -0.265 1.265 7 C -0.456 4.456 8 H 0.095 0.905 9 C 0.038 3.962 10 C -0.217 4.217 11 C -0.104 4.104 12 C -0.033 4.033 13 C 0.028 3.972 14 C -0.171 4.171 15 C -0.066 4.066 16 C -0.223 4.223 17 C 0.124 3.876 18 O -0.312 6.312 19 C -0.027 4.027 20 C -0.177 4.177 21 C -0.166 4.166 22 C -0.173 4.173 23 N -0.476 5.476 24 C 0.006 3.994 25 H 0.298 0.702 26 H 0.126 0.874 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.165 0.835 30 H 0.160 0.840 31 H 0.145 0.855 32 H 0.090 0.910 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 -13.815 -4.400 15.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.187 4.187 3 Si 0.814 3.186 4 H -0.181 1.181 5 H -0.177 1.177 6 H -0.189 1.189 7 C -0.484 4.484 8 H 0.113 0.887 9 C 0.033 3.967 10 C -0.242 4.242 11 C -0.124 4.124 12 C -0.165 4.165 13 C 0.027 3.973 14 C -0.190 4.190 15 C -0.083 4.083 16 C -0.241 4.241 17 C 0.079 3.921 18 O -0.226 6.226 19 C -0.082 4.082 20 C -0.214 4.214 21 C -0.203 4.203 22 C -0.193 4.193 23 N -0.184 5.184 24 C -0.161 4.161 25 H 0.110 0.890 26 H 0.144 0.856 27 H 0.159 0.841 28 H 0.157 0.843 29 H 0.183 0.817 30 H 0.177 0.823 31 H 0.162 0.838 32 H 0.108 0.892 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.505 -13.493 -4.978 15.400 hybrid contribution 0.855 1.215 0.545 1.583 sum -4.650 -12.278 -4.433 13.857 Atomic orbital electron populations 1.69804 1.09587 1.31863 1.31508 1.27108 0.95515 1.05481 0.90637 0.84983 0.79127 0.74649 0.79796 1.18127 1.17650 1.18944 1.20017 0.99118 0.91789 1.37475 0.88703 1.18971 0.93160 0.94367 0.90198 1.21298 1.03675 0.92288 1.06916 1.21519 0.94815 0.99204 0.96822 1.19426 0.98432 0.90623 1.08034 1.18520 0.92669 0.92225 0.93872 1.21342 1.02961 0.90900 1.03821 1.21184 0.93357 0.98996 0.94801 1.21461 1.02031 0.96034 1.04584 1.18903 0.87755 0.94261 0.91167 1.85990 1.41019 1.34098 1.61477 1.23472 0.96577 0.88330 0.99862 1.23558 1.01842 1.04353 0.91658 1.23482 0.90634 1.04238 1.01963 1.20377 0.98828 0.96921 1.03190 1.67113 1.31814 0.98984 1.20477 1.22956 0.97334 0.94803 1.00958 0.89049 0.85643 0.84079 0.84329 0.81724 0.82295 0.83777 0.89184 0.84993 0.84797 0.89107 0.88006 0.84231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.70 10.76 21.84 0.24 -40.47 16 2 C 0.03 1.48 5.17 85.28 0.44 1.92 16 3 Si 1.00 35.42 29.60 68.60 2.03 37.45 16 4 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 5 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 6 H -0.27 -9.08 7.11 99.48 0.71 -8.38 16 7 C -0.46 -23.30 9.07 23.39 0.21 -23.09 16 8 H 0.09 4.49 7.91 -2.91 -0.02 4.47 16 9 C 0.04 2.05 5.63 -21.17 -0.12 1.93 16 10 C -0.22 -10.50 9.88 22.64 0.22 -10.27 16 11 C -0.10 -4.71 9.37 22.29 0.21 -4.50 16 12 C -0.03 -1.65 6.73 41.95 0.28 -1.37 16 13 C 0.03 1.20 5.87 -20.05 -0.12 1.09 16 14 C -0.17 -5.69 9.41 22.54 0.21 -5.48 16 15 C -0.07 -1.72 10.03 22.22 0.22 -1.49 16 16 C -0.22 -6.05 9.13 22.44 0.20 -5.84 16 17 C 0.12 4.37 6.68 22.47 0.15 4.52 16 18 O -0.31 -10.37 10.39 -92.56 -0.96 -11.33 16 19 C -0.03 -0.59 6.12 30.59 0.19 -0.40 16 20 C -0.18 -3.03 10.48 30.62 0.32 -2.71 16 21 C -0.17 -2.87 10.48 30.62 0.32 -2.55 16 22 C -0.17 -7.49 9.51 22.63 0.22 -7.27 16 23 N -0.48 -26.49 9.40 -182.71 -1.72 -28.21 16 24 C 0.01 0.34 9.93 85.44 0.85 1.19 16 25 H 0.30 13.46 8.29 -92.71 -0.77 12.69 16 26 H 0.13 5.35 8.06 -2.91 -0.02 5.33 16 27 H 0.14 5.12 6.18 -2.91 -0.02 5.11 16 28 H 0.14 4.02 6.18 -2.91 -0.02 4.00 16 29 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.16 3.02 5.61 -2.91 -0.02 3.01 16 31 H 0.15 2.44 5.47 -2.39 -0.01 2.43 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.10 4.95 7.53 -2.91 -0.02 4.93 16 37 H 0.14 8.16 5.91 -2.91 -0.02 8.14 16 Total: -1.00 -66.47 316.71 4.50 -61.97 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 1.10 Total: 34.91 kcal Atomic # 6 Polarization: -58.15 SS G_CDS: 3.81 Total: -54.33 kcal Atomic # 7 Polarization: -67.19 SS G_CDS: -1.48 Total: -68.67 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -0.96 Total: -11.33 kcal Atomic # 14 Polarization: 35.42 SS G_CDS: 2.03 Total: 37.45 kcal Total: -66.47 4.50 -61.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242803361.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.894 kcal (2) G-P(sol) polarization free energy of solvation -66.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds