Wall clock time and date at job start Tue Mar 31 2020 05:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48505 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47474 * 299.99923 * 3 2 1 6 6 H 1.48503 * 109.46770 * 60.00305 * 3 2 1 7 7 C 1.40052 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00231 * 200.28371 * 7 2 1 9 9 C 1.41522 * 119.99784 * 20.28542 * 7 2 1 10 10 C 1.41141 * 120.98894 * 205.27479 * 9 7 2 11 11 C 1.37738 * 119.07357 * 179.97438 * 10 9 7 12 12 N 1.31922 * 121.15547 * 359.97438 * 11 10 9 13 13 C 1.32786 * 122.20838 * 0.02562 * 12 11 10 14 14 C 1.48372 * 119.61101 * 179.97438 * 13 12 11 15 15 C 1.39393 * 120.09746 * 184.99943 * 14 13 12 16 16 C 1.38018 * 119.99070 * 180.02562 * 15 14 13 17 17 C 1.38247 * 120.18271 * 0.27678 * 16 15 14 18 18 C 1.38794 * 120.19018 * 359.44900 * 17 16 15 19 19 O 1.35909 * 119.99788 * 180.27779 * 18 17 16 20 20 C 1.42906 * 116.99801 * 6.12765 * 19 18 17 21 21 C 1.52997 * 117.49877 * 225.34396 * 20 19 18 22 22 C 1.52997 * 117.49692 * 156.68470 * 20 19 18 23 23 C 1.38545 * 120.00988 * 0.54494 * 18 17 16 24 24 C 1.38892 * 120.77799 * 0.27081 * 13 12 11 25 25 H 0.96995 * 120.00352 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.46176 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.42650 * 180.02562 * 11 10 9 28 28 H 1.08002 * 120.00562 * 0.04377 * 15 14 13 29 29 H 1.07997 * 119.90857 * 180.02562 * 16 15 14 30 30 H 1.08002 * 119.90968 * 179.69763 * 17 16 15 31 31 H 1.08996 * 115.55121 * 11.01465 * 20 19 18 32 32 H 1.09006 * 117.49733 * 359.97438 * 21 20 19 33 33 H 1.08990 * 117.50309 * 145.01814 * 21 20 19 34 34 H 1.09001 * 117.49690 * 214.97824 * 22 20 19 35 35 H 1.08997 * 117.50378 * 359.97438 * 22 20 19 36 36 H 1.07995 * 120.09112 * 179.74571 * 23 18 17 37 37 H 1.07994 * 120.61960 * 179.70189 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3464 0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8825 2.3964 1.2126 7 6 2.0076 -1.2129 -0.0005 8 1 3.0373 -1.2420 0.3237 9 6 1.3659 -2.4003 -0.4260 10 6 1.7994 -3.6639 0.0295 11 6 1.1458 -4.7940 -0.4096 12 7 0.1269 -4.7125 -1.2437 13 6 -0.3209 -3.5497 -1.7025 14 6 -1.4711 -3.5252 -2.6394 15 6 -1.8836 -2.3214 -3.2085 16 6 -2.9541 -2.3011 -4.0794 17 6 -3.6236 -3.4713 -4.3853 18 6 -3.2158 -4.6750 -3.8274 19 8 -3.8732 -5.8240 -4.1353 20 6 -4.8859 -5.7426 -5.1403 21 6 -6.2181 -6.4404 -4.8589 22 6 -5.2469 -7.0293 -5.8852 23 6 -2.1420 -4.7046 -2.9524 24 6 0.2786 -2.3565 -1.3205 25 1 -0.4850 0.8400 0.0004 26 1 2.6314 -3.7435 0.7133 27 1 1.4725 -5.7638 -0.0644 28 1 -1.3653 -1.4048 -2.9683 29 1 -3.2723 -1.3678 -4.5199 30 1 -4.4638 -3.4495 -5.0635 31 1 -4.9154 -4.8098 -5.7035 32 1 -6.3219 -6.9619 -3.9074 33 1 -7.1240 -5.9670 -5.2372 34 1 -5.5144 -6.9430 -6.9383 35 1 -4.7118 -7.9378 -5.6090 36 1 -1.8262 -5.6399 -2.5143 37 1 -0.0846 -1.4125 -1.6990 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242803729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:15 Heat of formation + Delta-G solvation = 28.115261 kcal Electronic energy + Delta-G solvation = -20330.331057 eV Core-core repulsion = 17230.784753 eV Total energy + Delta-G solvation = -3099.546304 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.24365 -40.24800 -38.64104 -36.22044 -36.00508 -33.35486 -32.46916 -31.16265 -29.68693 -27.87312 -25.22269 -24.15298 -23.35722 -23.23024 -22.68516 -21.32710 -19.74809 -18.79826 -17.52040 -17.14959 -16.88313 -16.38851 -16.12552 -16.02259 -15.78987 -15.32153 -14.84861 -14.71429 -14.53305 -14.33334 -14.18669 -13.43223 -13.28774 -13.06179 -13.01044 -12.68055 -12.44829 -12.40897 -12.10845 -11.96577 -11.67115 -11.36007 -11.25110 -11.01454 -10.42055 -10.00792 -9.91962 -9.26278 -8.89695 -8.74282 -6.58184 -0.10267 0.48825 0.95044 1.12951 1.38914 1.53285 1.56085 2.06597 2.17579 2.60762 2.81440 2.98572 3.54378 3.69713 3.72740 3.88903 3.97872 4.03949 4.10800 4.30451 4.35160 4.40211 4.61816 4.72914 4.74215 4.79462 4.90689 4.94799 4.97914 5.09795 5.18933 5.19699 5.27986 5.36412 5.45707 5.50283 5.70928 5.82144 5.88758 6.16356 6.46572 6.50960 6.74798 6.76784 7.64048 8.21344 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026611 B = 0.003841 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.939713 B = 7287.220255 C = 8172.191630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.042 3.958 3 Si 0.986 3.014 4 H -0.257 1.257 5 H -0.260 1.260 6 H -0.264 1.264 7 C -0.488 4.488 8 H 0.085 0.915 9 C 0.097 3.903 10 C -0.290 4.290 11 C 0.101 3.899 12 N -0.578 5.578 13 C 0.128 3.872 14 C -0.005 4.005 15 C -0.154 4.154 16 C -0.074 4.074 17 C -0.202 4.202 18 C 0.120 3.880 19 O -0.305 6.305 20 C -0.028 4.028 21 C -0.178 4.178 22 C -0.164 4.164 23 C -0.143 4.143 24 C -0.209 4.209 25 H 0.295 0.705 26 H 0.117 0.883 27 H 0.158 0.842 28 H 0.120 0.880 29 H 0.162 0.838 30 H 0.165 0.835 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.305 -2.700 -10.833 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.177 4.177 3 Si 0.805 3.195 4 H -0.180 1.180 5 H -0.185 1.185 6 H -0.189 1.189 7 C -0.518 4.518 8 H 0.103 0.897 9 C 0.089 3.911 10 C -0.312 4.312 11 C -0.054 4.054 12 N -0.293 5.293 13 C -0.003 4.003 14 C -0.006 4.006 15 C -0.173 4.173 16 C -0.091 4.091 17 C -0.220 4.220 18 C 0.076 3.924 19 O -0.219 6.219 20 C -0.083 4.083 21 C -0.215 4.215 22 C -0.201 4.201 23 C -0.162 4.162 24 C -0.231 4.231 25 H 0.106 0.894 26 H 0.135 0.865 27 H 0.175 0.825 28 H 0.138 0.862 29 H 0.179 0.821 30 H 0.183 0.817 31 H 0.160 0.840 32 H 0.110 0.890 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.112 0.888 36 H 0.137 0.863 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.914 -3.555 -11.008 15.904 hybrid contribution 1.049 1.298 0.858 1.877 sum -9.865 -2.257 -10.150 14.333 Atomic orbital electron populations 1.69828 1.09255 1.31378 1.32880 1.26858 0.95445 1.04724 0.90645 0.85109 0.79474 0.75658 0.79224 1.18048 1.18459 1.18852 1.19893 0.99647 0.92214 1.40038 0.89669 1.18209 0.90708 0.93636 0.88498 1.22166 1.06938 0.93740 1.08392 1.22387 0.91489 0.98233 0.93254 1.67395 1.16987 1.27711 1.17238 1.19686 0.94818 0.89636 0.96112 1.18581 0.93459 0.93554 0.94974 1.21320 0.99552 0.96807 0.99618 1.21154 0.93324 0.99102 0.95543 1.21528 1.04066 0.91199 1.05197 1.18853 0.92022 0.86076 0.95494 1.85989 1.49562 1.30582 1.55795 1.23468 0.90359 1.00186 0.94313 1.23564 0.93618 1.03264 1.01034 1.23484 1.01448 0.95900 0.99237 1.20390 0.96168 0.98649 1.01030 1.22130 1.01494 0.97301 1.02193 0.89430 0.86512 0.82520 0.86237 0.82079 0.81743 0.83952 0.88997 0.85192 0.84926 0.88790 0.86321 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.71 11.25 21.84 0.25 -40.47 16 2 C 0.04 2.01 5.11 85.30 0.44 2.45 16 3 Si 0.99 36.27 29.60 68.60 2.03 38.30 16 4 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 5 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 6 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.49 -25.71 9.09 23.52 0.21 -25.49 16 8 H 0.09 4.30 7.92 -2.92 -0.02 4.27 16 9 C 0.10 5.32 5.57 -21.12 -0.12 5.20 16 10 C -0.29 -14.54 9.90 22.86 0.23 -14.32 16 11 C 0.10 4.83 11.15 84.56 0.94 5.77 16 12 N -0.58 -29.49 9.41 -185.37 -1.74 -31.23 16 13 C 0.13 6.59 6.72 41.86 0.28 6.87 16 14 C 0.00 -0.21 5.87 -20.06 -0.12 -0.33 16 15 C -0.15 -5.96 9.41 22.50 0.21 -5.75 16 16 C -0.07 -2.16 10.03 22.22 0.22 -1.94 16 17 C -0.20 -5.57 9.11 22.40 0.20 -5.37 16 18 C 0.12 4.10 6.67 22.48 0.15 4.25 16 19 O -0.31 -9.49 10.39 -92.52 -0.96 -10.45 16 20 C -0.03 -0.57 6.09 30.59 0.19 -0.38 16 21 C -0.18 -2.84 10.48 30.62 0.32 -2.52 16 22 C -0.16 -2.58 10.48 30.62 0.32 -2.25 16 23 C -0.14 -5.94 9.51 22.59 0.21 -5.73 16 24 C -0.21 -11.26 8.13 23.07 0.19 -11.07 16 25 H 0.29 13.18 8.29 -92.71 -0.77 12.41 16 26 H 0.12 5.33 8.06 -2.91 -0.02 5.30 16 27 H 0.16 6.16 8.06 -2.91 -0.02 6.13 16 28 H 0.12 4.81 6.20 -2.91 -0.02 4.79 16 29 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 30 H 0.17 3.12 5.67 -2.91 -0.02 3.11 16 31 H 0.14 2.28 5.54 -2.39 -0.01 2.27 16 32 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.13 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.12 5.26 7.54 -2.91 -0.02 5.24 16 37 H 0.12 6.45 4.61 -2.91 -0.01 6.44 16 Total: -1.00 -65.29 317.79 4.55 -60.73 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: 1.10 Total: 33.72 kcal Atomic # 6 Polarization: -54.48 SS G_CDS: 3.88 Total: -50.60 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -1.50 Total: -71.70 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.96 Total: -10.45 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Total: -65.29 4.55 -60.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242803729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.847 kcal (2) G-P(sol) polarization free energy of solvation -65.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds