Wall clock time and date at job start Tue Mar 31 2020 05:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86803 * 119.99752 * 2 1 4 4 H 1.48495 * 109.47418 * 89.99563 * 3 2 1 5 5 H 1.48498 * 109.47100 * 209.99799 * 3 2 1 6 6 H 1.48502 * 109.46979 * 329.99515 * 3 2 1 7 7 C 1.40013 * 120.00041 * 179.71740 * 2 1 3 8 8 H 1.08006 * 119.99543 * 153.07543 * 7 2 1 9 9 C 1.41379 * 120.00359 * 333.07550 * 7 2 1 10 10 C 1.40713 * 119.76717 * 158.05222 * 9 7 2 11 11 C 1.38250 * 119.18222 * 179.75319 * 10 9 7 12 12 C 1.38731 * 118.69217 * 0.50818 * 11 10 9 13 13 C 1.39862 * 119.45904 * 359.73491 * 12 11 10 14 14 C 1.48327 * 119.60436 * 179.97438 * 13 12 11 15 15 C 1.39428 * 120.09776 * 5.01883 * 14 13 12 16 16 C 1.38010 * 119.98508 * 179.97438 * 15 14 13 17 17 C 1.38261 * 120.18362 * 359.97438 * 16 15 14 18 18 C 1.38802 * 120.19783 * 0.04064 * 17 16 15 19 19 O 1.35903 * 119.99140 * 179.97438 * 18 17 16 20 20 C 1.42902 * 117.00113 * 5.43960 * 19 18 17 21 21 C 1.53005 * 117.49950 * 227.86077 * 20 19 18 22 22 C 1.53004 * 117.49646 * 159.20401 * 20 19 18 23 23 C 1.38534 * 120.01013 * 359.70792 * 18 17 16 24 24 N 1.32243 * 120.79091 * 0.02562 * 13 12 11 25 25 H 0.97002 * 119.99769 * 174.26716 * 1 2 3 26 26 H 1.08003 * 120.40901 * 359.97438 * 10 9 7 27 27 H 1.08009 * 120.65434 * 180.22305 * 11 10 9 28 28 H 1.08000 * 120.27239 * 179.70568 * 12 11 10 29 29 H 1.08000 * 120.00531 * 359.95667 * 15 14 13 30 30 H 1.07997 * 119.90789 * 179.97438 * 16 15 14 31 31 H 1.07999 * 119.89823 * 180.02562 * 17 16 15 32 32 H 1.09001 * 115.55044 * 13.53623 * 20 19 18 33 33 H 1.08997 * 117.49469 * 0.02562 * 21 20 19 34 34 H 1.08997 * 117.49794 * 145.01636 * 21 20 19 35 35 H 1.09005 * 117.49534 * 214.97696 * 22 20 19 36 36 H 1.08997 * 117.50136 * 359.97438 * 22 20 19 37 37 H 1.07996 * 120.08598 * 180.29349 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0466 1.4000 5 1 3.5390 1.4403 -0.7000 6 1 1.4388 2.6527 -0.7002 7 6 2.0075 -1.2125 0.0060 8 1 2.9998 -1.2652 -0.4173 9 6 1.4157 -2.3679 0.5661 10 6 1.8722 -3.6425 0.1827 11 6 1.2883 -4.7639 0.7419 12 6 0.2604 -4.5932 1.6579 13 6 -0.1528 -3.3002 1.9949 14 6 -1.2518 -3.1139 2.9734 15 6 -1.7970 -4.2160 3.6308 16 6 -2.8191 -4.0399 4.5413 17 6 -3.3048 -2.7725 4.8046 18 6 -2.7679 -1.6700 4.1543 19 8 -3.2489 -0.4261 4.4159 20 6 -4.2224 -0.3124 5.4559 21 6 -5.4842 0.4995 5.1566 22 6 -4.4152 1.0640 6.0956 23 6 -1.7382 -1.8368 3.2427 24 7 0.4238 -2.2418 1.4507 25 1 -0.4850 -0.8359 -0.0839 26 1 2.6713 -3.7434 -0.5368 27 1 1.6225 -5.7537 0.4675 28 1 -0.2170 -5.4516 2.1068 29 1 -1.4197 -5.2072 3.4274 30 1 -3.2408 -4.8945 5.0495 31 1 -4.1045 -2.6399 5.5183 32 1 -4.3267 -1.1858 6.0997 33 1 -5.5719 0.9465 4.1664 34 1 -6.4186 0.1605 5.6038 35 1 -4.6468 1.0961 7.1603 36 1 -3.7992 1.8827 5.7236 37 1 -1.3163 -0.9794 2.7396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242804300.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:22 Heat of formation + Delta-G solvation = 40.585782 kcal Electronic energy + Delta-G solvation = -20629.680431 eV Core-core repulsion = 17530.674889 eV Total energy + Delta-G solvation = -3099.005542 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -39.95692 -38.64358 -37.36342 -35.18273 -33.84402 -31.82286 -30.53392 -29.68755 -28.55640 -25.44653 -23.92867 -22.60899 -22.41563 -21.93839 -21.00664 -19.97640 -18.44928 -17.59393 -16.08310 -15.70887 -15.27380 -14.90741 -14.82470 -14.46705 -14.12420 -13.89418 -13.72016 -13.28453 -12.86974 -12.71464 -12.24400 -12.02565 -11.83750 -11.69652 -11.50113 -11.20231 -11.03990 -10.87216 -10.58528 -10.39296 -10.35893 -10.01300 -9.86539 -9.11893 -8.90365 -8.33554 -7.99248 -7.86956 -7.41962 -7.07565 -4.59363 1.36583 1.83710 2.74889 2.86263 3.17336 3.20012 3.29271 3.38638 3.66575 4.06205 4.21743 4.56330 4.70333 4.77640 4.92418 5.03636 5.14119 5.21903 5.45761 5.49373 5.62720 5.65021 5.73947 5.84095 5.96651 5.98805 6.04566 6.31233 6.35291 6.58938 6.65505 6.67582 6.75596 6.93422 7.14334 7.20786 7.42693 7.54315 7.73503 7.75380 7.84729 8.00744 8.63085 8.74764 9.73791 10.11521 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.005693 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.180584 B = 4916.725787 C = 6820.385696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.046 3.954 3 Si 1.068 2.932 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.499 4.499 8 H 0.083 0.917 9 C 0.252 3.748 10 C -0.267 4.267 11 C -0.053 4.053 12 C -0.301 4.301 13 C 0.187 3.813 14 C 0.017 3.983 15 C -0.143 4.143 16 C -0.091 4.091 17 C -0.216 4.216 18 C 0.120 3.880 19 O -0.281 6.281 20 C 0.005 3.995 21 C -0.188 4.188 22 C -0.172 4.172 23 C -0.112 4.112 24 N -0.534 5.534 25 H 0.303 0.697 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.957 -1.521 9.238 12.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.182 4.182 3 Si 0.892 3.108 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.529 4.529 8 H 0.101 0.899 9 C 0.128 3.872 10 C -0.290 4.290 11 C -0.077 4.077 12 C -0.324 4.324 13 C 0.044 3.956 14 C 0.016 3.984 15 C -0.163 4.163 16 C -0.109 4.109 17 C -0.235 4.235 18 C 0.076 3.924 19 O -0.195 6.195 20 C -0.052 4.052 21 C -0.225 4.225 22 C -0.209 4.209 23 C -0.131 4.131 24 N -0.248 5.248 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.379 1.145 9.349 12.606 hybrid contribution 0.375 -2.855 -0.141 2.883 sum -8.004 -1.710 9.208 12.320 Atomic orbital electron populations 1.70226 1.08360 1.34747 1.24069 1.26938 0.95671 1.03965 0.91640 0.83600 0.75330 0.73665 0.78193 1.19964 1.20224 1.20158 1.20495 1.03752 0.94031 1.34621 0.89890 1.18479 0.88155 0.92146 0.88469 1.21813 1.06845 0.93551 1.06805 1.20861 0.94793 0.97159 0.94896 1.21115 1.05922 0.96152 1.09218 1.19436 0.92811 0.89922 0.93450 1.18605 0.93780 0.91900 0.94160 1.21166 0.98093 0.98694 0.98314 1.20710 0.96452 0.96075 0.97674 1.21128 1.04397 0.92942 1.04987 1.18897 0.94220 0.83238 0.96066 1.86075 1.54878 1.26705 1.51799 1.22961 0.92336 0.96701 0.93217 1.23469 0.93312 1.03987 1.01755 1.23338 1.02007 0.96643 0.98913 1.20747 0.95301 0.98872 0.98223 1.68227 1.13381 1.30828 1.12402 0.88360 0.88004 0.88152 0.87956 0.85606 0.86116 0.85904 0.86020 0.87787 0.88017 0.87755 0.87718 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.74 13.07 55.55 0.73 -20.01 16 2 C 0.05 1.19 5.20 -17.35 -0.09 1.10 16 3 Si 1.07 22.14 30.01 -169.99 -5.10 17.04 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 6 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 7 C -0.50 -13.44 9.00 -37.72 -0.34 -13.78 16 8 H 0.08 2.13 7.98 -52.48 -0.42 1.71 16 9 C 0.25 6.86 6.03 -85.01 -0.51 6.35 16 10 C -0.27 -6.59 9.83 -38.64 -0.38 -6.97 16 11 C -0.05 -1.18 10.15 -39.39 -0.40 -1.58 16 12 C -0.30 -6.70 9.47 -38.79 -0.37 -7.06 16 13 C 0.19 4.54 6.73 -82.93 -0.56 3.98 16 14 C 0.02 0.35 5.87 -104.92 -0.62 -0.26 16 15 C -0.14 -2.51 9.41 -39.22 -0.37 -2.88 16 16 C -0.09 -1.36 10.03 -39.66 -0.40 -1.75 16 17 C -0.22 -3.30 9.10 -39.36 -0.36 -3.66 16 18 C 0.12 2.21 6.67 -39.26 -0.26 1.95 16 19 O -0.28 -4.95 10.39 -19.44 -0.20 -5.15 16 20 C 0.00 0.06 6.06 -26.73 -0.16 -0.10 16 21 C -0.19 -1.98 10.48 -26.69 -0.28 -2.26 16 22 C -0.17 -1.80 10.48 -26.69 -0.28 -2.08 16 23 C -0.11 -2.42 9.51 -39.09 -0.37 -2.79 16 24 N -0.53 -14.45 7.28 -7.68 -0.06 -14.50 16 25 H 0.30 8.70 7.05 -40.82 -0.29 8.41 16 26 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 27 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 28 H 0.10 1.96 6.20 -52.49 -0.33 1.63 16 29 H 0.13 1.98 6.19 -52.49 -0.32 1.66 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.12 1.49 5.69 -52.49 -0.30 1.19 16 32 H 0.12 1.31 5.60 -51.93 -0.29 1.02 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.15 3.61 7.54 -52.49 -0.40 3.21 16 LS Contribution 319.08 15.07 4.81 4.81 Total: -1.00 -29.87 319.08 -9.66 -39.54 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -4.10 Total: 10.08 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: -5.74 Total: -31.79 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.67 Total: -34.52 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.20 Total: -5.15 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.10 Total: 17.04 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.87 -9.66 -39.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242804300.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.123 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds