Wall clock time and date at job start Tue Mar 31 2020 05:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30713 * 1 3 3 Si 1.86799 * 120.00251 * 2 1 4 4 H 1.48500 * 109.47292 * 270.27826 * 3 2 1 5 5 H 1.48502 * 109.46668 * 30.27770 * 3 2 1 6 6 H 1.48497 * 109.47062 * 150.27366 * 3 2 1 7 7 C 1.40102 * 119.99880 * 180.27907 * 2 1 3 8 8 H 1.07999 * 120.00372 * 179.72640 * 7 2 1 9 9 C 1.40996 * 120.00165 * 359.72439 * 7 2 1 10 10 C 1.40876 * 119.68281 * 179.72890 * 9 7 2 11 11 C 1.36684 * 119.25101 * 179.76486 * 10 9 7 12 12 C 1.40260 * 118.60682 * 0.50045 * 11 10 9 13 13 C 1.47974 * 120.34621 * 179.76893 * 12 11 10 14 14 C 1.39668 * 120.11645 * 359.69624 * 13 12 11 15 15 C 1.37937 * 119.96072 * 179.72209 * 14 13 12 16 16 C 1.38325 * 120.20274 * 0.56085 * 15 14 13 17 17 C 1.38867 * 120.24125 * 359.71601 * 16 15 14 18 18 O 1.35897 * 119.98454 * 179.97438 * 17 16 15 19 19 C 1.42898 * 117.00130 * 354.48896 * 18 17 16 20 20 C 1.53002 * 117.49976 * 224.92400 * 19 18 17 21 21 C 1.53001 * 117.50068 * 156.26059 * 19 18 17 22 22 C 1.38454 * 120.02845 * 0.02562 * 17 16 15 23 23 C 1.40093 * 119.30615 * 359.74141 * 12 11 10 24 24 N 1.31190 * 120.69413 * 359.97438 * 23 12 11 25 25 H 0.97002 * 119.99818 * 359.72624 * 1 2 3 26 26 H 1.08004 * 120.36837 * 359.97438 * 10 9 7 27 27 H 1.08003 * 120.69344 * 180.23914 * 11 10 9 28 28 H 1.08001 * 120.02156 * 0.02562 * 14 13 12 29 29 H 1.08002 * 119.89874 * 180.27823 * 15 14 13 30 30 H 1.08009 * 119.87962 * 179.74358 * 16 15 14 31 31 H 1.09001 * 115.55296 * 10.58774 * 19 18 17 32 32 H 1.09001 * 117.50110 * 359.97438 * 20 19 18 33 33 H 1.09002 * 117.50078 * 145.02622 * 20 19 18 34 34 H 1.08994 * 117.50479 * 214.97593 * 21 19 18 35 35 H 1.09003 * 117.49575 * 0.02562 * 21 19 18 36 36 H 1.08001 * 120.09527 * 180.02562 * 22 17 16 37 37 H 1.08005 * 119.65363 * 180.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.4828 2.0498 -1.4000 5 1 1.4415 2.6509 0.7059 6 1 3.5416 1.4384 0.6942 7 6 2.0076 -1.2133 -0.0059 8 1 3.0876 -1.2134 -0.0104 9 6 1.3027 -2.4344 -0.0060 10 6 2.0138 -3.6505 -0.0177 11 6 1.3215 -4.8290 -0.0128 12 6 -0.0804 -4.7844 -0.0069 13 6 -0.8682 -6.0370 -0.0066 14 6 -0.2187 -7.2734 -0.0186 15 6 -0.9562 -8.4390 -0.0125 16 6 -2.3385 -8.3879 -0.0062 17 6 -2.9930 -7.1632 0.0000 18 8 -4.3513 -7.1190 0.0057 19 6 -5.0414 -8.3642 -0.1174 20 6 -6.2249 -8.4234 -1.0852 21 6 -6.4699 -8.4369 0.4258 22 6 -2.2624 -5.9871 -0.0007 23 6 -0.7269 -3.5416 -0.0007 24 7 -0.0351 -2.4269 0.0001 25 1 -0.4850 0.8401 0.0040 26 1 3.0938 -3.6514 -0.0271 27 1 1.8431 -5.7748 -0.0177 28 1 0.8604 -7.3169 -0.0277 29 1 -0.4529 -9.3946 -0.0173 30 1 -2.9109 -9.3039 -0.0056 31 1 -4.4219 -9.2562 -0.0250 32 1 -6.4774 -7.5123 -1.6278 33 1 -6.3843 -9.3544 -1.6291 34 1 -6.7903 -9.3768 0.8752 35 1 -6.8834 -7.5347 0.8766 36 1 -2.7703 -5.0340 0.0045 37 1 -1.8061 -3.5007 0.0043 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242805132.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:26 Heat of formation + Delta-G solvation = 51.560441 kcal Electronic energy + Delta-G solvation = -20094.460567 eV Core-core repulsion = 16995.930922 eV Total energy + Delta-G solvation = -3098.529645 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -39.91466 -38.53228 -37.30663 -35.21128 -33.87872 -31.71644 -30.86425 -29.54093 -28.60018 -25.75436 -23.48401 -22.90396 -22.61963 -21.66820 -20.94791 -19.89679 -18.06867 -17.68576 -16.21881 -15.54376 -15.53108 -15.18965 -14.65371 -14.47277 -14.28526 -13.92442 -13.45955 -13.10459 -12.83460 -12.54623 -12.40924 -12.01767 -11.80397 -11.73424 -11.52709 -11.29079 -11.08301 -10.87953 -10.74217 -10.43592 -10.30583 -10.08540 -10.07744 -9.62382 -8.86804 -8.30722 -7.85576 -7.69883 -7.23301 -6.60366 -4.66390 1.53581 1.91152 2.73518 2.98489 3.00652 3.02054 3.13156 3.15744 3.63448 3.78934 4.29756 4.53054 4.68948 4.75087 4.89595 5.10032 5.23792 5.40228 5.42442 5.63014 5.69720 5.76986 5.80239 5.89896 5.92013 5.98819 6.07324 6.24566 6.44182 6.62818 6.66334 6.75110 6.87291 6.92339 7.04572 7.17986 7.26670 7.54533 7.69117 7.78895 7.87960 8.03690 8.43324 8.72969 9.93699 10.09388 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028395 B = 0.003370 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.839354 B = 8306.198604 C = 9210.588869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.697 5.697 2 C 0.062 3.938 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.404 4.404 8 H 0.089 0.911 9 C 0.251 3.749 10 C -0.273 4.273 11 C -0.032 4.032 12 C -0.282 4.282 13 C 0.073 3.927 14 C -0.183 4.183 15 C -0.071 4.071 16 C -0.253 4.253 17 C 0.139 3.861 18 O -0.287 6.287 19 C 0.006 3.994 20 C -0.187 4.187 21 C -0.175 4.175 22 C -0.180 4.180 23 C 0.162 3.838 24 N -0.489 5.489 25 H 0.278 0.722 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.441 -11.785 -0.324 13.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.316 5.316 2 C -0.166 4.166 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.433 4.433 8 H 0.107 0.893 9 C 0.129 3.871 10 C -0.295 4.295 11 C -0.055 4.055 12 C -0.287 4.287 13 C 0.072 3.928 14 C -0.202 4.202 15 C -0.089 4.089 16 C -0.271 4.271 17 C 0.094 3.906 18 O -0.200 6.200 19 C -0.051 4.051 20 C -0.224 4.224 21 C -0.212 4.212 22 C -0.198 4.198 23 C -0.008 4.008 24 N -0.201 5.201 25 H 0.089 0.911 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.145 0.855 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.105 -10.579 -0.302 12.747 hybrid contribution 0.795 -0.426 -0.021 0.902 sum -6.310 -11.005 -0.323 12.690 Atomic orbital electron populations 1.70121 1.07401 1.28481 1.25591 1.26222 0.95045 1.01570 0.93769 0.86230 0.80472 0.80209 0.79483 1.19131 1.19833 1.18303 1.19827 0.94702 0.89583 1.39226 0.89324 1.18696 0.88616 0.91977 0.87852 1.21439 0.98922 0.93532 1.15611 1.20655 0.92960 0.96811 0.95034 1.18996 0.93131 0.92243 1.24357 1.18612 0.91108 0.92854 0.90276 1.21075 0.99677 0.91699 1.07711 1.20683 0.92988 0.97773 0.97486 1.20910 0.95424 0.96082 1.14714 1.18789 0.81122 0.94247 0.96413 1.86007 1.16776 1.29769 1.87465 1.22994 0.88685 0.88132 1.05298 1.23455 1.01966 1.03994 0.93031 1.23346 0.97274 1.03959 0.96645 1.20394 0.92901 0.96166 1.10375 1.22821 0.98788 0.87878 0.91324 1.68821 1.07054 1.26313 1.17877 0.91062 0.88050 0.88176 0.86382 0.86758 0.86406 0.85773 0.87888 0.87993 0.87819 0.87871 0.85466 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.86 11.44 55.55 0.64 -17.22 16 2 C 0.06 1.50 5.50 -17.33 -0.10 1.40 16 3 Si 0.91 17.65 29.56 -169.99 -5.02 12.62 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.40 -10.35 9.12 -37.84 -0.35 -10.69 16 8 H 0.09 2.09 7.85 -52.49 -0.41 1.68 16 9 C 0.25 6.68 6.55 -84.97 -0.56 6.13 16 10 C -0.27 -6.50 9.76 -39.15 -0.38 -6.89 16 11 C -0.03 -0.70 9.46 -39.38 -0.37 -1.07 16 12 C -0.28 -6.36 5.92 -104.45 -0.62 -6.98 16 13 C 0.07 1.45 5.88 -104.90 -0.62 0.83 16 14 C -0.18 -3.20 9.44 -39.16 -0.37 -3.57 16 15 C -0.07 -1.08 10.03 -39.66 -0.40 -1.48 16 16 C -0.25 -3.83 9.19 -39.32 -0.36 -4.19 16 17 C 0.14 2.37 6.67 -39.27 -0.26 2.11 16 18 O -0.29 -4.58 10.39 -19.42 -0.20 -4.78 16 19 C 0.01 0.07 6.20 -26.73 -0.17 -0.10 16 20 C -0.19 -1.81 10.48 -26.69 -0.28 -2.09 16 21 C -0.18 -1.66 10.48 -26.69 -0.28 -1.94 16 22 C -0.18 -3.42 9.38 -39.03 -0.37 -3.78 16 23 C 0.16 3.93 10.60 -17.13 -0.18 3.75 16 24 N -0.49 -13.28 7.83 -10.84 -0.08 -13.36 16 25 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 26 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 27 H 0.10 1.90 6.29 -52.48 -0.33 1.57 16 28 H 0.12 1.92 6.25 -52.49 -0.33 1.59 16 29 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.12 1.44 5.50 -52.48 -0.29 1.15 16 31 H 0.13 1.29 5.32 -51.93 -0.28 1.01 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.13 2.41 6.22 -52.49 -0.33 2.08 16 37 H 0.12 2.75 6.21 -52.48 -0.33 2.42 16 LS Contribution 315.81 15.07 4.76 4.76 Total: -1.00 -28.78 315.81 -9.52 -38.31 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -3.96 Total: 8.23 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -5.65 Total: -28.55 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 0.55 Total: -30.58 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.20 Total: -4.78 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.02 Total: 12.62 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.78 -9.52 -38.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242805132.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.867 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds