Wall clock time and date at job start Tue Mar 31 2020 05:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30713 * 1 3 3 Si 1.86799 * 120.00251 * 2 1 4 4 H 1.48500 * 109.47292 * 270.27826 * 3 2 1 5 5 H 1.48502 * 109.46668 * 30.27770 * 3 2 1 6 6 H 1.48497 * 109.47062 * 150.27366 * 3 2 1 7 7 C 1.40102 * 119.99880 * 180.27907 * 2 1 3 8 8 H 1.07999 * 120.00372 * 179.72640 * 7 2 1 9 9 C 1.40996 * 120.00165 * 359.72439 * 7 2 1 10 10 C 1.40876 * 119.68281 * 179.72890 * 9 7 2 11 11 C 1.36684 * 119.25101 * 179.76486 * 10 9 7 12 12 C 1.40260 * 118.60682 * 0.50045 * 11 10 9 13 13 C 1.47974 * 120.34621 * 179.76893 * 12 11 10 14 14 C 1.39668 * 120.11645 * 359.69624 * 13 12 11 15 15 C 1.37937 * 119.96072 * 179.72209 * 14 13 12 16 16 C 1.38325 * 120.20274 * 0.56085 * 15 14 13 17 17 C 1.38867 * 120.24125 * 359.71601 * 16 15 14 18 18 O 1.35897 * 119.98454 * 179.97438 * 17 16 15 19 19 C 1.42898 * 117.00130 * 354.48896 * 18 17 16 20 20 C 1.53002 * 117.49976 * 224.92400 * 19 18 17 21 21 C 1.53001 * 117.50068 * 156.26059 * 19 18 17 22 22 C 1.38454 * 120.02845 * 0.02562 * 17 16 15 23 23 C 1.40093 * 119.30615 * 359.74141 * 12 11 10 24 24 N 1.31190 * 120.69413 * 359.97438 * 23 12 11 25 25 H 0.97002 * 119.99818 * 359.72624 * 1 2 3 26 26 H 1.08004 * 120.36837 * 359.97438 * 10 9 7 27 27 H 1.08003 * 120.69344 * 180.23914 * 11 10 9 28 28 H 1.08001 * 120.02156 * 0.02562 * 14 13 12 29 29 H 1.08002 * 119.89874 * 180.27823 * 15 14 13 30 30 H 1.08009 * 119.87962 * 179.74358 * 16 15 14 31 31 H 1.09001 * 115.55296 * 10.58774 * 19 18 17 32 32 H 1.09001 * 117.50110 * 359.97438 * 20 19 18 33 33 H 1.09002 * 117.50078 * 145.02622 * 20 19 18 34 34 H 1.08994 * 117.50479 * 214.97593 * 21 19 18 35 35 H 1.09003 * 117.49575 * 0.02562 * 21 19 18 36 36 H 1.08001 * 120.09527 * 180.02562 * 22 17 16 37 37 H 1.08005 * 119.65363 * 180.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.4828 2.0498 -1.4000 5 1 1.4415 2.6509 0.7059 6 1 3.5416 1.4384 0.6942 7 6 2.0076 -1.2133 -0.0059 8 1 3.0876 -1.2134 -0.0104 9 6 1.3027 -2.4344 -0.0060 10 6 2.0138 -3.6505 -0.0177 11 6 1.3215 -4.8290 -0.0128 12 6 -0.0804 -4.7844 -0.0069 13 6 -0.8682 -6.0370 -0.0066 14 6 -0.2187 -7.2734 -0.0186 15 6 -0.9562 -8.4390 -0.0125 16 6 -2.3385 -8.3879 -0.0062 17 6 -2.9930 -7.1632 0.0000 18 8 -4.3513 -7.1190 0.0057 19 6 -5.0414 -8.3642 -0.1174 20 6 -6.2249 -8.4234 -1.0852 21 6 -6.4699 -8.4369 0.4258 22 6 -2.2624 -5.9871 -0.0007 23 6 -0.7269 -3.5416 -0.0007 24 7 -0.0351 -2.4269 0.0001 25 1 -0.4850 0.8401 0.0040 26 1 3.0938 -3.6514 -0.0271 27 1 1.8431 -5.7748 -0.0177 28 1 0.8604 -7.3169 -0.0277 29 1 -0.4529 -9.3946 -0.0173 30 1 -2.9109 -9.3039 -0.0056 31 1 -4.4219 -9.2562 -0.0250 32 1 -6.4774 -7.5123 -1.6278 33 1 -6.3843 -9.3544 -1.6291 34 1 -6.7903 -9.3768 0.8752 35 1 -6.8834 -7.5347 0.8766 36 1 -2.7703 -5.0340 0.0045 37 1 -1.8061 -3.5007 0.0043 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242805132.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:25 Heat of formation + Delta-G solvation = 37.063316 kcal Electronic energy + Delta-G solvation = -20095.089210 eV Core-core repulsion = 16995.930922 eV Total energy + Delta-G solvation = -3099.158288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.16626 -40.18239 -38.62402 -36.25664 -35.60033 -33.32153 -32.65059 -31.02569 -30.14325 -27.46128 -24.78537 -24.47767 -23.36011 -23.17261 -22.50872 -21.22593 -19.50496 -19.29801 -17.72525 -17.03785 -16.83050 -16.43304 -16.05970 -15.87750 -15.72180 -15.22250 -14.76393 -14.50299 -14.41173 -14.34162 -13.91352 -13.41841 -13.21013 -12.98320 -12.81657 -12.75716 -12.49190 -12.46362 -12.02635 -11.84841 -11.77921 -11.38737 -11.32233 -10.98216 -10.47972 -10.10089 -9.56337 -9.23915 -8.84043 -8.39510 -6.54682 0.03366 0.57926 1.03503 1.25348 1.39247 1.54121 1.57868 2.10866 2.18188 2.67306 2.83684 3.10750 3.64480 3.90443 3.90809 3.97111 4.03596 4.06003 4.11858 4.18925 4.34830 4.45877 4.54427 4.65142 4.71250 4.80069 4.86447 4.95185 4.97709 5.09279 5.13219 5.18173 5.41438 5.42749 5.44349 5.59185 5.68758 5.96979 6.01426 6.05123 6.21429 6.56737 6.61608 6.85472 8.08419 8.33271 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028395 B = 0.003370 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.839354 B = 8306.198604 C = 9210.588869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.017 3.983 3 Si 0.994 3.006 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.251 1.251 7 C -0.444 4.444 8 H 0.099 0.901 9 C 0.217 3.783 10 C -0.286 4.286 11 C -0.034 4.034 12 C -0.271 4.271 13 C 0.042 3.958 14 C -0.185 4.185 15 C -0.063 4.063 16 C -0.235 4.235 17 C 0.132 3.868 18 O -0.309 6.309 19 C -0.026 4.026 20 C -0.180 4.180 21 C -0.164 4.164 22 C -0.198 4.198 23 C 0.133 3.867 24 N -0.524 5.524 25 H 0.283 0.717 26 H 0.119 0.881 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.144 0.856 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.471 -15.096 -0.358 16.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.206 4.206 3 Si 0.813 3.187 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.174 1.174 7 C -0.474 4.474 8 H 0.117 0.883 9 C 0.094 3.906 10 C -0.308 4.308 11 C -0.057 4.057 12 C -0.277 4.277 13 C 0.041 3.959 14 C -0.203 4.203 15 C -0.081 4.081 16 C -0.253 4.253 17 C 0.087 3.913 18 O -0.223 6.223 19 C -0.082 4.082 20 C -0.217 4.217 21 C -0.201 4.201 22 C -0.217 4.217 23 C -0.035 4.035 24 N -0.236 5.236 25 H 0.094 0.906 26 H 0.137 0.863 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.176 0.824 30 H 0.173 0.827 31 H 0.161 0.839 32 H 0.108 0.892 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.111 0.889 36 H 0.128 0.872 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.169 -13.934 -0.336 15.674 hybrid contribution 0.553 0.212 -0.017 0.592 sum -6.616 -13.722 -0.353 15.238 Atomic orbital electron populations 1.70229 1.09245 1.29685 1.27407 1.27197 0.95783 1.05098 0.92503 0.85031 0.79027 0.74993 0.79636 1.18526 1.19225 1.17406 1.20178 0.95348 0.90357 1.41526 0.88337 1.19183 0.88867 0.93656 0.88909 1.21665 0.99888 0.93397 1.15845 1.21017 0.92829 0.97777 0.94037 1.19310 0.93881 0.92839 1.21641 1.18579 0.91320 0.92795 0.93255 1.21310 1.00631 0.91386 1.06987 1.21151 0.92972 0.98657 0.95322 1.21392 0.95882 0.96531 1.11506 1.18864 0.81950 0.94324 0.96157 1.85977 1.16257 1.32689 1.87426 1.23475 0.89609 0.87083 1.08046 1.23561 1.00031 1.04779 0.93354 1.23479 0.95000 1.04986 0.96628 1.20410 0.93142 0.96738 1.11401 1.23047 0.99188 0.88592 0.92629 1.68745 1.07912 1.27785 1.19193 0.90622 0.86324 0.84566 0.85031 0.82439 0.82693 0.83867 0.89152 0.85254 0.84880 0.88884 0.87168 0.85511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -40.40 11.44 21.85 0.25 -40.15 16 2 C 0.02 0.87 5.50 85.31 0.47 1.34 16 3 Si 0.99 37.23 29.56 68.60 2.03 39.25 16 4 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 5 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 6 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 7 C -0.44 -23.82 9.12 23.40 0.21 -23.60 16 8 H 0.10 4.82 7.85 -2.91 -0.02 4.79 16 9 C 0.22 12.15 6.55 40.17 0.26 12.42 16 10 C -0.29 -13.97 9.76 22.55 0.22 -13.75 16 11 C -0.03 -1.49 9.46 22.40 0.21 -1.28 16 12 C -0.27 -12.56 5.92 -19.75 -0.12 -12.68 16 13 C 0.04 1.65 5.88 -20.04 -0.12 1.53 16 14 C -0.18 -5.97 9.44 22.54 0.21 -5.75 16 15 C -0.06 -1.63 10.03 22.22 0.22 -1.41 16 16 C -0.23 -6.18 9.19 22.44 0.21 -5.97 16 17 C 0.13 4.34 6.67 22.47 0.15 4.49 16 18 O -0.31 -9.60 10.39 -92.39 -0.96 -10.56 16 19 C -0.03 -0.55 6.20 30.60 0.19 -0.36 16 20 C -0.18 -2.99 10.48 30.62 0.32 -2.67 16 21 C -0.16 -2.64 10.48 30.62 0.32 -2.31 16 22 C -0.20 -7.67 9.38 22.63 0.21 -7.46 16 23 C 0.13 6.87 10.60 85.24 0.90 7.77 16 24 N -0.52 -30.29 7.83 -188.21 -1.47 -31.76 16 25 H 0.28 13.78 8.29 -92.71 -0.77 13.01 16 26 H 0.12 5.20 8.06 -2.91 -0.02 5.17 16 27 H 0.14 4.91 6.29 -2.91 -0.02 4.89 16 28 H 0.13 3.82 6.25 -2.91 -0.02 3.81 16 29 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.16 2.90 5.50 -2.91 -0.02 2.89 16 31 H 0.14 2.32 5.32 -2.39 -0.01 2.31 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.11 4.49 6.22 -2.91 -0.02 4.48 16 37 H 0.13 6.19 6.21 -2.91 -0.02 6.17 16 Total: -1.00 -67.18 315.81 4.83 -62.35 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 1.10 Total: 30.57 kcal Atomic # 6 Polarization: -53.59 SS G_CDS: 3.88 Total: -49.71 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -1.22 Total: -71.91 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.96 Total: -10.56 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.25 kcal Total: -67.18 4.83 -62.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242805132.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.416 kcal (2) G-P(sol) polarization free energy of solvation -67.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds